Homology
BLAST of mRNA_C-linearis_contig103.844.1 vs. uniprot
Match:
D7FME6_ECTSI (Similar to mitochondrial import inner membrane translocase,TIM17/22/23-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME6_ECTSI)
HSP 1 Score: 222 bits (566), Expect = 1.160e-66
Identity = 124/174 (71.26%), Postives = 137/174 (78.74%), Query Frame = 3
Query: 156 MDGWNVDPAG-AQDIYAPDCASRAAEGFYVGALYGTVWGVVGRASSAPILPPTPTTGALKTLSAPNSSSPSPVSRPSGLGARGVSRHLRAFGSGAAGYGMAAASTGGLFGVFVGMVNAGTCACERFRGKKDWFNNTFGGAVAGGSVALLSRHTRSPQMIAAHVAGAAAITSIVA 674
M+ WNV+P YAPDC+SRAAEGFYVGALYG VWGV+GRA+ AP LP TP G LK S + P+P GL RGVSR +RAFG GAAGYG+AAAST G+FGVFVGMVNAGTC CER RGKKDWFNN FGGA AG SVALLSRHTR+PQM+AAHVAGAAAITS+VA
Sbjct: 1 MEDWNVEPPEMTHKDYAPDCSSRAAEGFYVGALYGAVWGVIGRAAHAPTLPSTPAMGELKPPSG-LQAQPAP-----GLETRGVSRQVRAFGRGAAGYGIAAASTAGVFGVFVGMVNAGTCGCERLRGKKDWFNNAFGGAAAGLSVALLSRHTRTPQMLAAHVAGAAAITSVVA 168
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.844.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 1.16e-66 / Id = 71.26 Sequence D7FME6_ECTSI
Match Name E-value Identity Description
D7FME6_ECTSI 1.160e-66 71.26 Similar to mitochondrial import inner membrane tra... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 5 Model size 1591 Cds size 549 Stop 1 Start 1
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927378.2816098-UTR-C-linearis_contig103:421898..421951 1622927378.2816098-UTR-C-linearis_contig103:421898..421951 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig103 421899..421951 + 1690879664.581482-UTR-C-linearis_contig103:421898..421951 1690879664.581482-UTR-C-linearis_contig103:421898..421951 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig103 421899..421951 + 1622927378.2991188-UTR-C-linearis_contig103:423659..423761 1622927378.2991188-UTR-C-linearis_contig103:423659..423761 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig103 423660..423761 + 1690879664.5945866-UTR-C-linearis_contig103:423659..423761 1690879664.5945866-UTR-C-linearis_contig103:423659..423761 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig103 423660..423761 + 1622927378.3545072-UTR-C-linearis_contig103:426831..427718 1622927378.3545072-UTR-C-linearis_contig103:426831..427718 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig103 426832..427718 + 1690879664.6442657-UTR-C-linearis_contig103:426831..427718 1690879664.6442657-UTR-C-linearis_contig103:426831..427718 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig103 426832..427718 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927378.315107-CDS-C-linearis_contig103:423761..423861 1622927378.315107-CDS-C-linearis_contig103:423761..423861 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig103 423762..423861 + 1690879664.605814-CDS-C-linearis_contig103:423761..423861 1690879664.605814-CDS-C-linearis_contig103:423761..423861 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig103 423762..423861 + 1622927378.326029-CDS-C-linearis_contig103:424388..424450 1622927378.326029-CDS-C-linearis_contig103:424388..424450 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig103 424389..424450 + 1690879664.614435-CDS-C-linearis_contig103:424388..424450 1690879664.614435-CDS-C-linearis_contig103:424388..424450 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig103 424389..424450 + 1622927378.3356144-CDS-C-linearis_contig103:425685..425903 1622927378.3356144-CDS-C-linearis_contig103:425685..425903 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig103 425686..425903 + 1690879664.6228669-CDS-C-linearis_contig103:425685..425903 1690879664.6228669-CDS-C-linearis_contig103:425685..425903 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig103 425686..425903 + 1622927378.3461711-CDS-C-linearis_contig103:426662..426831 1622927378.3461711-CDS-C-linearis_contig103:426662..426831 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig103 426663..426831 + 1690879664.6314461-CDS-C-linearis_contig103:426662..426831 1690879664.6314461-CDS-C-linearis_contig103:426662..426831 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig103 426663..426831 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.844.1
>prot_C-linearis_contig103.844.1 ID=prot_C-linearis_contig103.844.1|Name=mRNA_C-linearis_contig103.844.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=183bp
MDGWNVDPAGAQDIYAPDCASRAAEGFYVGALYGTVWGVVGRASSAPILP back to top mRNA from alignment at C-linearis_contig103:421899..427718+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig103.844.1 ID=mRNA_C-linearis_contig103.844.1|Name=mRNA_C-linearis_contig103.844.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5820bp|location=Sequence derived from alignment at C-linearis_contig103:421899..427718+ (Chordaria linearis ClinC8C monoicous)CCACGACGGCCACTGCTATGCGACACACACCCTGTTAACAGCTTCTGGGA
CAG GTGATTTGACGGGTTCGGTCGGGGGTGTCCTCGTGGTTGAGCGCTTG
GGTTGAAGTCGAAAAAAGGAAGGAGAGAGGAAGCCAGGTACATTTTTCGT
ACAGCAGTATACATATAAGGCGATTCCGAGGGCACATGTTGGAATGGATT
GTTATCGCTTGCATCACCTGTTACCTCGTGTGTTGCGTTGCTCCTGCGCT
TGGCAGTGCTACTGGCGCCGACTGGCGGTGTTAGTTACTCGGTTGGATTC
TGATGGTCTGTTTTTGCAGAAGACTGCCTGTAACCCCTGTCGCCCGTAAT
TAACAGAGTAGTGACAAGGGGTTTGAACTTGGCCCTCTGCCCGATTTGTC
GCACTTCGCCACCGCATCATGGATCATGGAGGCTTCGACGTTGCGGCGTG
CAGCATTGCGCCGCACGAAGCTTACAGCATGCGTTTTTGAAAGAAAAAAC
TGTTGGCTGTCGGCACAACGCTAGGGTTGACAATGACCCCCTTAACCATT
GAAGCTGTCTAACGATGAACGAGGGGAGGTATGCGCTGAAAAATTGAAAG
GATGGTCGCGAAAAGAGATGTGAAGTACAATAGATACAGAGGCATTTTCT
CCACCCGGGGTTTGCCGGGAATTATCCTCCCTTCCACGGGCACTCACAAC
AACGTCGATAACACGCCCTACAGCCTTCCCCACTCCTACCCAAGCACTGA
ACTGGACAGAATAGCTCCCGCTGTATCGCTGGGGTGGCTTGTGGGTAGGT
TTTCTGTAACACAGGGGTGTGCACCGCTGTCGGAGCTATACCAGATATCC
CGGTGCCGTTTTGGATACACTTTTACTTTTCGGCGGGTGCCTATTTCTAT
TCTACAATAGACATTTGCGCTCAATCTCACGGTCAGAACTACTCCTCCTT
ACCTATCGTCAGCAGCGTCGAAGTTCCCTAACTTGCTTCAGGCCCGGACG
CCGAGCTAGCACCCTCCAAGGGCAGCAACTCTCTAATCAAGTGTAATACA
ATACCCCCGCCCCACCAACCCACGAAGAAACAGCGAGCCCCCAACGGGAG
GACAAAAAAGGGGGCTGTTTTGGATACACTTTTCGGCGGCGCCTATTTCT
ACTCTGCAATAGACATTTGCGCTCAATCTCACGGTCAGAACTACTCCTCC
TAGCCTATCGTCAGCAGCGTCAAAGTCCCCTAACTTGATTAAGGCCCGGA
CGCCGAGCTAGCACCCTCCAAGGGATCGTTTGCGGGCAGCAACTCTGTAA
CTGAGTGTAATACAATATCCCCCCCTAACCCCCAGCAAAAAACAGCGAGC
CCCCAACGGGATAAAAAATGGCGGCGGAACCTCAGCCAACAACACTGCCT
ACAGCAGTACAGCAGAGCAAGGATCGCAACAAGTCAAAAACATCCATGCT
GGTGGGTGAAGAACGAAGTCGTGGAAGATAAACGGTTTGGCATATTGGAA
AAAATTGTAACCTGTGGTCGAGACCAGCAGCATGCGGCTTGGGTGCTCCG
GGGTAAGCTCTCGGCAATCATTGCCGCCTTCCATTGGGAATCTTCAGCAC
CCTTCGATCCCTGTGGCAACAAGAAGAAACTACGCAAGGCATATTGCGTT
AGCCTCCCTTGATGGTCTGATTTTCGTGAGGGGGCAAGAGTTTCGACTCA
GCCCAGGGTGCACAGATAATCACTGGAAAAATTCCATCCGTTTGCTCTGT
CCGCGCCGCAGGGGCGAGGCACGAGGAAGCGAATCGCTGCTTACCCTGCT
TGGAGGAATACCACCACGAACAACAACAACAACAGCAGCAGCAGCAGCAG
CAGCGGCAGCAGC ATGGATGGTTGGAACGTGGACCCAGCCGGGGCCCAAG
ACATTTACGCCCCGGACTGCGCGTCGAGAGCGGCGGAGGGCTTCTACGTG
GGGGCCTTATACG GTGCGTTCGTTTCTCGTGTGTTGTCGAAAATGTGCGC
ACCCGCAAACATAACTACAGTTTCGGATCGTGGATTTTGTATCTACCTCT
TGTAGGCTCGGTCAGTCAGTGATGGTGTGTCTACAACAGCCCCCCTGGGA
CGATGTTTTGGCGGGTTGGACGCAGGCCCATGACGATAAGTATGTAGAAA
CAGCTCCAAACATCGAGCAGTTGACGAAAGTCGGGGAGAAGCTAGCTACC
CTTGAGCCTGGGGCTTTGACCCCTCGGTGGCAACGGCGGTGGAAATAACC
TGCCGCGTGTTCCTGCGTGGCGAACGCGAGAAACAGCCTAGGGTCCCCAT
GCGGTATGCAAGTCCTTTCGCCACCTTGGCCTCCAAGATGCTGTGTATCC
CAAAGCCTTACAATCGTTTGGTGATGGTTTTCTGATTTTGTTGGTGGAAA
ACCTCCACCTCGTCCAACCCCCGTGTTCACCGCTGGTTCAAAATTTGCTC
AGAAGATAAATATGCGGTTTTCTCTGCTTTTTTTAAACAGGGACGGTGTG
GGGAGTGGTCGGCCGCGCTTCTTCTGCTCCCATTTTGCCGCCAACACCAA
CG GTATGTTACCACGTTGCAAAGTACATAGCGTAGCCAACTAGTTTGTGT
TCTGTGCTTTGTCTGGGGCGGGGGAGGTGCGGGTACGGCGCTTCCGCTGT
GACGCTCGTGTCGGCGGTTGTCTTGCTGTCCGCCGGACAAGAGTAACGAA
ACAAGGGAGACCGGAGTGACGAAACAAGGAAGACCGGGAAAGGATTGCAC
GGAAGGAGTGAAAGTCACGCCACGGGGGGTTCGCAGGGTCCTTGCGGTCG
TACTAATCGTAGTCGTTCTCCTGCGTTGATACTTGCTCCCCTTTCCTTCG
TTTGCGGGTGCGAACTCGCATCCTCATCAACTACTCTCGGCCTCCTGTCT
ACGGAGAGGCGAGTGGGCCGCATACAGAACCACCGTACCGCTTCAAGAGG
TTTCATCCCCAAGACCCCCCCCTCGATGTACCGTGCCTATCCTGTAAAAA
AAAAAATGAGAGTGCACCCTTCTTGCTCCCTCCCTCCCTCCCACTCTATC
CGCGAAGCCCCTTTTCTTTCCAAACCTAACCAACCACATGTAAGTGCCAC
CATAGAATGACCGGTTAGAGTGACGTCAGATGACCGGCCAGAACCTATGT
CCTGGCCGGGGTAGGACAGATAGAGTCAGAACCGTTCCTGGGATTCCTCG
GAGGGACAACGGAGGAACAACGTTCCTCGGATGAATGCGGGGTATCTTTG
CCCATGCAAACACAGCCCAGCTGGCTCGCCCACACACGCACAACCCGGTG
TTGTCCTCCGCACCAAATCACCTTGGCAGAAGAGACTTGAACGCCTACAG
AAGCTGTACGGGGCTCATCCCCCTCATGCACATACCATATGAACGTATAC
GAAGTATACCTGTATCGTTTCTTTACATTTGCCCCCTCTTCTTCACTTGT
ATGAATTTATGGCTGCCATCGACTGCTGCATACATAGATCGTGGCGAAAA
GCCTGCATCATGTCTTCACACTTTCCCCCTTCTCTGGAAAAACCCGATTT
ATTTGCTGTTTGGCTTTGCGAGAGTTGCGCAAGGGAGGAAGGTGGTGGAT
ATTTCTTTTCTTTTGTTCAGGTGTTATTTCTACTGGGCCGGACCATAATA
CATCGCTGTACATGGGATTGCTAGATAACTCACCGCATAGTGTTCGGCGT
CTCTACGTTGAAAGGGGTTCCTTCTTTGACTCCACTCGACTTCCTCTTAA
AAAGCCCACACCACCCCTTTCGCCTCGCCGAACGAAGACCGGGGCGTTGA
AAACGTTGTCGGCCCCCAACTCTTCTTCTCCTTCTCCTGTTTCGAGACCC
TCCGGGCTTGGCGCTCGAGGGGTTTCGCGGCATCTCCGGGCGTTCGGCAG
CGGTGCCGCGGGGTACGGCATGGCGGCGGCGTCCACCGGCGGTCTGTTCG
GGGTTTTCGTGGGCATGGTGAACGCCGGGACGTGCGCTTGCGAGCGATTT
CGAGG GTGGGTTTGGCGTTTTGCTATCTTTTTTTTCTTTTTCTTTCTACG
GTATACAGTATCAGTAAACCTCGGCGGTCGACGTGCAACCCGTGATGAGA
TCGTTCCGGGGGGACTTTTTGTAGACACGCAAGCCCCCTACCTCACCGCC
CCAGACTACAGACGTGGTACAACGTCCGCAAACCACACTTGTACGTGTTT
TCGGGCGTTGATTTGTTTGGTGTTGTTGTTGTGGAAAGTGTGGGTTTGAT
ACGCATCGGAAGTTTTAATTGCTGCCCACGTGGGCGTGCAGGGTAAGAAA
GGTGCATTGAAGTAGAAGTGAAGAAAGTGACCCTGAAAGCATCTGGAATG
TGAACATGGTGGCTGATGAGGTGCGCGAATGGGCAGGAAGTGGTACCTCA
CCTCACCATGATACGCAGTACGAGGTAGCTCTGGTCACATCACATCACGT
TCTGCGCGGTTTTCAAAAGCTTTTCAATTGCACCATGTGCATTGCGGCAC
GTGGCCGACTAGCGTTGGGCGACCCTATGCGGCCCTGCGCACAACGGGTG
GCAATACACGGTTTGATGCTTTCAGACTAGTTTCATTAAAATAACACATG
AACGTCGATGCCCGAAAATGAAGCTCTGCGCTTAATATTCAACCGTATGT
ATAATAATAGTGGTATTGTACGGGGAAGTAAAAACAAGCCCCCAGGCAAA
TACGAGTATGCGATATACTTATCTGGTGACGCCATTACGTGTTGTTGCAT
TCGCGCTCCGCCAGGAAGAAGGACTGGTTCAACAACACGTTCGGGGGCGC
CGTCGCCGGAGGTTCCGTGGCGCTGCTCTCCAGACATACCCGTAGCCCCC
AAATGATCGCTGCCCACGTGGCGGGAGCAGCCGCGATAACGTCGATCGTG
GCTTTCGCCACGGGCTCCCCAGTTGGAAGCTAG CTTTGTTGGAAACTCGG
CTCTACAATAGAACCTCTCGGCCGTTTTTGTTGTTGTATTTCGTTGTTGT
TTCTCACTCCCGCCGACAATGTCGGAGGGTATGTCTGCTCTGCCATGTAT
CCGTTTTTTTCCGTGTCTTTATTGTTGGGGTTGTTATATGTTTGAAGACC
GCGCGGAGACGTGTGCAGGTTAGAACAGCACGGATTTTTCGGATTTTTCG
ACTCACCGAATATACGAGTTTGTAAATGTCGTTGTCGATGATGCAAGGCA
GTATCCTGACAGGCAGCTCTTCGCACGGTATGTCGGAACCAGCTCCGTAA
GGGGGCTACAAGTATCACCCGTGCGTAACCCCCGTGGGTTCAAACCTGTC
GCTACTGGTCTCTTGCTTAGGGGTTAGGGGCTACCGTTTTGTAACTGCTA
CGAATCGTCTCGCTTTCGTGTTCAACGTGCTCTGTCGTCTGTTCGTAGAT
TTCATAGATTTCGATTTTCACGTTCTACGAATGAGGCGAAAAAGTACGTG
GAACAAGTAAGCAAGACGATTGCGTGTTGATTGCACATAGGTATGCTACC
GGATGGTTCGTTTTTTTATTTTTTGTATTTTAACATTTACTTCCAGAGTT
CGCAGGGGCGCCTTGCCGCGCGGGGCATCTTGCCAGAGCATCTGAACCGT
GGTCACACAGAAGGTTCTTCTCCCTGAGGCCCCCGCCCACCTTCTCCGGT
GCTTGCCTGGTATTTTTTAACACGAGAGAGTTTCAGCCGTCTCTCCCTCA
AGTGTACACACCAACTAACTAAGCGCTTTCCACCGACAGGAACGAAAGCG
AGAGAAAAAAACTCGCTTTGTGTGAGATCAAGTCGCTTACGCCGGGATGG
TTCGGAGAAGGGACAAATTA back to top Coding sequence (CDS) from alignment at C-linearis_contig103:421899..427718+
>mRNA_C-linearis_contig103.844.1 ID=mRNA_C-linearis_contig103.844.1|Name=mRNA_C-linearis_contig103.844.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1098bp|location=Sequence derived from alignment at C-linearis_contig103:421899..427718+ (Chordaria linearis ClinC8C monoicous) back to top