mRNA_C-linearis_contig103.840.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig103.840.1 vs. uniprot
Match: A0A6H5KWI4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWI4_9PHAE) HSP 1 Score: 674 bits (1740), Expect = 3.610e-228 Identity = 504/783 (64.37%), Postives = 576/783 (73.56%), Query Frame = 1 Query: 169 IRPSVRDAHG--VLG--CSLAVIALLSAVPGGESFLCPMAVKGVASSPGGLASGKVRQQQQRLAARDICSMVADGGKEVPGVES-DALGEARQGAPRKGPFRRVRALFGRKAAAAAAVSALVGAGAPGSAEALFGRG--KSPEMPSVPAIEQRLEDAAGEVLEAAEDVASTVEAAGGVLPEMG----DTLDGLETGDPSEESLVGG--VEGVATTAVPAKSAEKKAVAGVSTLELAKDLVVENKEVAAVVIVGAVGSRYLLVKAGGKPGRGRGSRRRRGTGGA--APKSPSMGIGQPRVSPEVAAADQKKKAESLKNARFDVDVDLFGDAVSDLPARPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINKISNAAEASSTKPVEAASATTETAASPXXXXXXXXXXXXXXXXXPPSTFYSKKMPEKGKRKGAPILNLFRRDTGPQRATTLEEALAAETPDVAVFRQALAAVLSGSAPPGEFSVKEPKALSEAVITPEDFEGEAGEKAAETSRISALTDLMETAGLSLQEGADVVADVVNAMVVRLTDAAVTSNGDASVAKASDVLLQYMDGAGALFVALCPGIALDPQIKYNGTFKRGKLEKVFEAAAKSTLKTMGDEGQMVSLDRLQASLDLFSIKKAKADSITQKIMMDLMMKMMSEGGGEXXDAEGLEKMMAAMGGAEGMGXXXXXXXXXXXXAGRSPEDHKKEVEALKAMVDSGECPKEEVDALRKMYSDAGMDIDKLVNDPMMESSMDSDAKEMVELLRKLLALWPNK 2472
+RP+ RDA G VLG C + ++ +LS PGGE+FL P AV+ G ASGK+ QQ+ + R I SM A + + V S D + P GP RVR+LFGRKAA AAAVSALV AGAPGSAEALFGRG +PEMPSVPA+EQ+LE A GEV+E ++AS V+ + L+GLET + E GG V G+ TT + + +AV GVST+ + KDLVVENKEV AVV+ G +GSRYLLV+ GGK APKSP GIGQPRVSPEVAAAD KK+A+SLK+A FDVD+DLFGDAV+DLPARP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXX PEK KRK PIL+LF+RDTGPQR+TT++EAL+ E+P+VA FR+ LAAVL+ SAP GEF V+EP L+EA I PEDFEGEAG KAA SR+SAL +LMETAGLSL++GA+VVADVVNAMVV+LTDAAV+S G S A AS+ LL+YMD AGALFV LCPGIALDPQIKYNGT+KRGKLEKVFEAAAKSTLK+MGDEGQM+SLDRLQ DLFSIKK+KADSITQKIMMDLMMKMMSEGGGE DAEGLEKMMAAMGG EG XXXXXX AGRSPEDHK+EVEALK MV+SG+CPKEEVDALRKMY+DAG+DID LVNDP ME+SMD+DAKE+V LLRKLL LWP K
Sbjct: 1 MRPAFRDAMGGGVLGGTCLMVIVMVLSVAPGGEAFLHPAAVQ----RHGAAASGKMLQQRPAVKTRGIGSMTAGVEEGMLDVASRDENSSVTRSTP--GPLLRVRSLFGRKAATAAAVSALVSAGAPGSAEALFGRGGRSAPEMPSVPALEQQLETAVGEVVEGVGEIASAVDKXXXXXXXXXXXXEEALEGLETPEAGSE---GGDAVGGLVTTTPATEEDQGRAVGGVSTVGIVKDLVVENKEVVAVVVAGVIGSRYLLVQRGGKXXXXXXXXXXXXXXXXXXAPKSPLAGIGQPRVSPEVAAADLKKRADSLKSANFDVDLDLFGDAVADLPARPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSIKPEKSKRK--PILSLFKRDTGPQRSTTMQEALSDESPNVADFRRGLAAVLAESAPKGEFDVEEPTLLAEATIVPEDFEGEAGVKAAAASRMSALKELMETAGLSLEQGAEVVADVVNAMVVKLTDAAVSSKGVDSTAAASNALLKYMDEAGALFVTLCPGIALDPQIKYNGTYKRGKLEKVFEAAAKSTLKSMGDEGQMMSLDRLQ---DLFSIKKSKADSITQKIMMDLMMKMMSEGGGEDGDAEGLEKMMAAMGGMEGX------XXXXXXGAGRSPEDHKREVEALKQMVESGDCPKEEVDALRKMYTDAGLDIDTLVNDPNMEASMDADAKEVVVLLRKLLDLWPKK 763
BLAST of mRNA_C-linearis_contig103.840.1 vs. uniprot
Match: A0A835Z1E0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1E0_9STRA) HSP 1 Score: 166 bits (420), Expect = 2.220e-38 Identity = 135/365 (36.99%), Postives = 198/365 (54.25%), Query Frame = 1 Query: 1393 PPSTFYSKKMPEKGKRK-GAPILNLFRRDTGPQRATTLEEALAA-ETPDVAVFRQALAAVLSGSAPPGEFSVKEPKALSEAVITPEDFEGEAGEKAAETSRISALTDLMETAGLSLQEGADVVADVVNAMVVRLTDAAVTSNGDASVAKA--SDVLLQYMDGAGALFVALCPGIALDPQIKYNGTFKRGKLEKVFEAAAKSTLKTMGDEGQMVSLDRLQASLDLFSIKKAKADSITQKIMMDLMMKMMSEGGGEXXDAEGLEKMMAAMGGAEGMGXXXXXXXXXXXXAGRSPEDHK--KEVEALKAMVDSGECPKEEVDALRKMYSDAGMDIDKLVNDPMM-ESSMDSDAKEMVELLRKLLALWP 2466
PPS ++ PE K+K G + LF++ R TT+ +A++A E + F QALA LS APPG F+ +P L + + EG L +L+ ++G + + AD +ADVVNAMVV LTDAAV + D + SD+LL YMD AG F A+CPG+ALDP ++YNG K+ +LE+++E ++ + D+ +S R + D+ +IK++KA S+ QK++M+++ KMM EGG XX G G PE + ++EA KAMV G ++EV LRKMY D GMDID++V + ES+MD +AKE+ LLR++L P
Sbjct: 227 PPSAMEAQAAPEPPKKKLGLGLGGLFKKGAASNRPTTIGDAISAQEGGGLEGFSQALAGYLSHFAPPGSFA-PDPTFLRDGELDRAGAEG-------------TLLELVSSSGATSLQVADAIADVVNAMVVGLTDAAVAAIKDEDRCRQALSDLLL-YMDNAGGTFAAVCPGVALDPPLRYNGAAKKRQLEELYENFTRAMVT---DQSADMSA-RQERLRDMLNIKESKARSLEQKVLMEVVQKMMKEGGDXXXXXXXXXXXXXXXEG------------------GGMPEGPEVAAQLEAFKAMVKDGNVSRDEVTELRKMYKDMGMDIDQMVAESAAAESTMDREAKELYSLLRQMLEQHP 554
BLAST of mRNA_C-linearis_contig103.840.1 vs. uniprot
Match: H6WBA5_VAULI (Uncharacterized protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBA5_VAULI) HSP 1 Score: 125 bits (313), Expect = 7.510e-27 Identity = 89/269 (33.09%), Postives = 150/269 (55.76%), Query Frame = 1 Query: 1690 ISALTDLMETAGLSLQEGADVVADVVNAMVVRLTDAAVTSNGDASVA--KASDVLLQYMDGAGALFVALCPGIALDPQIKYNGTFKRGKLEKVFEAAAKSTLKTMGDEGQMVSLDRLQASLDLFSIKKAKADSITQKIMMDLMMKMMSEGGGEXXDAEGLEKMMAAMGGAEGMGXXXXXXXXXXXXAGRSPE-----DHKKEVEALKAMVDSGECPKEEVDALRKMYSDAGMDIDKLVNDPM-MESSMDSDAKEMVELLRKLLALWPNK 2472
I+ L L +++ + A+ +A + N M+ L DAAV +N + A +A L+++M +G++F A+CPGI LDP ++YNG K+ +LE+++ A+ +++ + E M ++ DL IK+ KA +I QK MMD + M+ +GGG+ E + ++ +G A G G PE + + ++E+ K +V G+ +EEV LRKMY + GMDIDKLV + E MD+ +E+ +LLR++L+ +P K
Sbjct: 167 INTLISLSDSSKENSNSVAEAIACIANPMINELVDAAVAANQKSPPACEEALMGLVRFMKVSGSVFEAVCPGIVLDPPLRYNGGSKKKQLEEIY-ASLSASISSENSEELMSFQKEIR---DLLGIKEFKAKAIEQKAMMDALQNMVKDGGGDGSSQEQMAALLQNIG-ANG---------------GPEPEMPSGPEMEAQLESFKNLVKGGQVTEEEVKELRKMYKEMGMDIDKLVKESEGNEGMMDAQGRELFDLLRQMLSQYPLK 415
BLAST of mRNA_C-linearis_contig103.840.1 vs. uniprot
Match: A0A6H5KL11_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL11_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 9.150e-15 Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 1 Query: 2698 MNDLICINHTFKAHLEFLEKMMFAALQAAGLTLKPSKIQFGQKEVDYL 2841
M+DLICINHTF+AHL LEKM FAALQAAGLTLKPSKIQFGQKEVDYL
Sbjct: 85 MDDLICINHTFEAHLSSLEKM-FAALQAAGLTLKPSKIQFGQKEVDYL 131
BLAST of mRNA_C-linearis_contig103.840.1 vs. uniprot
Match: A0A6H5J8C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8C1_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 1.990e-13 Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 1 Query: 2698 MNDLICINHTFKAHLEFLEKMMFAALQAAGLTLKPSKIQFGQKEVDYL 2841
M+DLICINHTF+AHL LEKM FAALQAAGLTLKPSKIQFGQKEVDYL
Sbjct: 1 MDDLICINHTFEAHLSSLEKM-FAALQAAGLTLKPSKIQFGQKEVDYL 47
BLAST of mRNA_C-linearis_contig103.840.1 vs. uniprot
Match: A0A6H5JK17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK17_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 2.250e-13 Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 1 Query: 2698 MNDLICINHTFKAHLEFLEKMMFAALQAAGLTLKPSKIQFGQKEVDYL 2841
M+DLICINHTF+AHL LEKM FAALQAAGLTLKPSKIQFGQKEVDYL
Sbjct: 178 MDDLICINHTFEAHLSSLEKM-FAALQAAGLTLKPSKIQFGQKEVDYL 224
BLAST of mRNA_C-linearis_contig103.840.1 vs. uniprot
Match: A0A6H5JGV3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGV3_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 2.250e-13 Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 1 Query: 2698 MNDLICINHTFKAHLEFLEKMMFAALQAAGLTLKPSKIQFGQKEVDYL 2841
M+DLICINHTF+AHL LEKM FAALQAAGLTLKPSKIQFGQKEVDYL
Sbjct: 328 MDDLICINHTFEAHLSSLEKM-FAALQAAGLTLKPSKIQFGQKEVDYL 374
BLAST of mRNA_C-linearis_contig103.840.1 vs. uniprot
Match: A0A6H5LN90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN90_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 2.370e-13 Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 1 Query: 2698 MNDLICINHTFKAHLEFLEKMMFAALQAAGLTLKPSKIQFGQKEVDYL 2841
M+DLICINHTF+AHL LEKM FAALQAAGLTLKPSKIQFGQKEVDYL
Sbjct: 85 MDDLICINHTFEAHLSSLEKM-FAALQAAGLTLKPSKIQFGQKEVDYL 131
BLAST of mRNA_C-linearis_contig103.840.1 vs. uniprot
Match: A0A6H5K112_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K112_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 4.060e-13 Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 1 Query: 2698 MNDLICINHTFKAHLEFLEKMMFAALQAAGLTLKPSKIQFGQKEVDYL 2841
M+DLICINHTF+AHL LEKM FAALQAAGLTLKPSKIQFGQKEVDYL
Sbjct: 328 MDDLICINHTFEAHLSSLEKM-FAALQAAGLTLKPSKIQFGQKEVDYL 374
BLAST of mRNA_C-linearis_contig103.840.1 vs. uniprot
Match: A0A6H5K047_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K047_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 1.080e-11 Identity = 40/48 (83.33%), Postives = 43/48 (89.58%), Query Frame = 1 Query: 2698 MNDLICINHTFKAHLEFLEKMMFAALQAAGLTLKPSKIQFGQKEVDYL 2841
M+DLICIN TFK HL +EKM FAALQAAGLTLKPSKIQFG+KEVDYL
Sbjct: 120 MDDLICINRTFKTHLVSIEKM-FAALQAAGLTLKPSKIQFGRKEVDYL 166 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.840.1 >prot_C-linearis_contig103.840.1 ID=prot_C-linearis_contig103.840.1|Name=mRNA_C-linearis_contig103.840.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=775bp MQQQRIIRPSVRDAHGVLGCSLAVIALLSAVPGGESFLCPMAVKGVASSPback to top mRNA from alignment at C-linearis_contig103:337881..353399+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig103.840.1 ID=mRNA_C-linearis_contig103.840.1|Name=mRNA_C-linearis_contig103.840.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=15519bp|location=Sequence derived from alignment at C-linearis_contig103:337881..353399+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig103:337881..353399+ >mRNA_C-linearis_contig103.840.1 ID=mRNA_C-linearis_contig103.840.1|Name=mRNA_C-linearis_contig103.840.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4650bp|location=Sequence derived from alignment at C-linearis_contig103:337881..353399+ (Chordaria linearis ClinC8C monoicous)back to top |