mRNA_C-linearis_contig103.839.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig103.839.1 vs. uniprot
Match: A0A6H5KUS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUS8_9PHAE) HSP 1 Score: 337 bits (864), Expect = 1.690e-108 Identity = 169/207 (81.64%), Postives = 186/207 (89.86%), Query Frame = 2 Query: 326 MYSTTQYDHLVKLLVIGDSGVGKSCLLLRYSDGQFSGSYISTIGIDFKIKTALLMGRKVKLQIWDTAGQERFRNITSAYYRGSMGILLVYDVSDDKSFRNVSNWMRQIELNASPDVNITLVGNKCDVGDDERAVSFEQGQALAAERGERVRFFETSARSNVNVTEAFEGLATDVILRLQSQDQAAIAGVPTLKLGKEEPKSKLADCC 946
M+STT YDHLVKLL+IGDSGVGKSCLLLRYSD QFSGSYISTIGIDFKIKT LMG+K KLQIWDTAGQERFRNITSAYYRGSMGI+LVYDV+D KSF+NV NWMRQIELNA+PDVN+TLVGNK DV ++ER VS EQGQ LAAE G+ VRFFETSARSNVNVTEAFEGLATDVI RLQ+QD+A++A V LKLG+EEP K +DCC
Sbjct: 2 MHSTTGYDHLVKLLIIGDSGVGKSCLLLRYSDDQFSGSYISTIGIDFKIKTVFLMGKKAKLQIWDTAGQERFRNITSAYYRGSMGIMLVYDVTDLKSFKNVGNWMRQIELNAAPDVNVTLVGNKSDVAEEERVVSLEQGQRLAAEHGDHVRFFETSARSNVNVTEAFEGLATDVITRLQAQDEASLARVAPLKLGQEEPTKK-SDCC 207
BLAST of mRNA_C-linearis_contig103.839.1 vs. uniprot
Match: A0A485LS68_9STRA (Aste57867_25075 protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A485LS68_9STRA) HSP 1 Score: 249 bits (637), Expect = 7.360e-75 Identity = 128/206 (62.14%), Postives = 162/206 (78.64%), Query Frame = 2 Query: 335 TTQYDHLVKLLVIGDSGVGKSCLLLRYSDGQFSGSYISTIGIDFKIKTALLMGRKVKLQIWDTAGQERFRNITSAYYRGSMGILLVYDVSDDKSFRNVSNWMRQIELNASPDVNITLVGNKCDVGDDERAVSFEQGQALAAERGERVRFFETSARSNVNVTEAFEGLATDVILRLQS--QDQAAIAGVPTLKLGKEEPKSKLADCC 946
+++YD LVKLL+IGDSGVGKSCLL+RYSD F+ S+I+TIGIDFK+KT + G++VKLQIWDTAGQERFR IT+AYYRG+MGILLVYDV+DD SF+NV NWMRQI+ +ASP+VN L+GNKCDV ERAV+ EQG+ALA E G V+FFETSA+SN+NV EAF +A DV RL D++ +A +KL ++ ++ CC
Sbjct: 5 SSKYDLLVKLLLIGDSGVGKSCLLMRYSDDSFTTSFITTIGIDFKVKTIEVDGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDDHSFQNVRNWMRQIQQHASPNVNKILIGNKCDVDPSERAVTKEQGEALANEYG--VQFFETSAKSNLNVEEAFRSIAVDVQKRLAECESDRSDVANQTRIKLDEQNSRAASEGCC 208
BLAST of mRNA_C-linearis_contig103.839.1 vs. uniprot
Match: D7FME1_ECTSI (Rab8B, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME1_ECTSI) HSP 1 Score: 241 bits (614), Expect = 2.620e-72 Identity = 122/153 (79.74%), Postives = 135/153 (88.24%), Query Frame = 2 Query: 488 MGRKVKLQIWDTAGQERFRNITSAYYRGSMGILLVYDVSDDKSFRNVSNWMRQIELNASPDVNITLVGNKCDVGDDERAVSFEQGQALAAERGERVRFFETSARSNVNVTEAFEGLATDVILRLQSQDQAAIAGVPTLKLGKEEPKSKLADCC 946
MG+K KLQIWDTAGQERFRNITSAYYRGSMGI+LVYDV+D KSFRNV NWMRQIELNA+PDVN+TLVGNK DV + ER VSFEQGQ LAAE G+ VRFFETSARSNVNVTEAFEGLATDVI RLQ+QD+A++A V LKLG+EE K +DCC
Sbjct: 1 MGKKAKLQIWDTAGQERFRNITSAYYRGSMGIMLVYDVTDVKSFRNVGNWMRQIELNAAPDVNVTLVGNKSDVAEAERVVSFEQGQRLAAEHGDHVRFFETSARSNVNVTEAFEGLATDVITRLQTQDEASLARVAPLKLGQEESTEK-SDCC 152
BLAST of mRNA_C-linearis_contig103.839.1 vs. uniprot
Match: A0A067CHF2_SAPPC (Uncharacterized protein n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CHF2_SAPPC) HSP 1 Score: 242 bits (617), Expect = 5.810e-72 Identity = 127/209 (60.77%), Postives = 161/209 (77.03%), Query Frame = 2 Query: 326 MYSTTQYDHLVKLLVIGDSGVGKSCLLLRYSDGQFSGSYISTIGIDFKIKTALLMGRKVKLQIWDTAGQERFRNITSAYYRGSMGILLVYDVSDDKSFRNVSNWMRQIELNASPDVNITLVGNKCDVGDDERAVSFEQGQALAAERGERVRFFETSARSNVNVTEAFEGLATDVILRLQS--QDQAAIAGVPTLKLGKEEPKSKLADCC 946
M +++YD LVKLL+IGDSGVGKSCLL+RYSD F+ S+I+TIGIDFK+KT + G++VKLQIWDTAGQERFR IT+AYYRG+MGILLVYDV+DD SF+NV NWMRQI+ +ASP+VN L+GNKCDV ER V+ +QG+ LAAE G V+FFETSA+SN+NV EAF +A DV RL D+ +A +KL ++ + +D C
Sbjct: 1 MVHSSKYDLLVKLLLIGDSGVGKSCLLMRYSDDTFTSSFITTIGIDFKVKTIDVDGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDDHSFQNVRNWMRQIQQHASPNVNKILIGNKCDVDPSERVVTTQQGEELAAEYG--VQFFETSAKSNLNVEEAFRSIAVDVQKRLAECESDRLDVANERKIKL--DDHADRTSDGC 205
BLAST of mRNA_C-linearis_contig103.839.1 vs. uniprot
Match: W7U3B0_9STRA (Rab8-family small gtpase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3B0_9STRA) HSP 1 Score: 238 bits (607), Expect = 1.910e-70 Identity = 122/203 (60.10%), Postives = 155/203 (76.35%), Query Frame = 2 Query: 338 TQYDHLVKLLVIGDSGVGKSCLLLRYSDGQFSGSYISTIGIDFKIKTALLMGRKVKLQIWDTAGQERFRNITSAYYRGSMGILLVYDVSDDKSFRNVSNWMRQIELNASPDVNITLVGNKCDVGDDERAVSFEQGQALAAERGERVRFFETSARSNVNVTEAFEGLATDVILRLQSQDQAAIAGVPTLKLGKEEPKSKLADCC 946
++YDHL+KLL+IGDSGVGKSCLLLRYS+ F+ S+I+TIGIDFKIK+ L +K+KLQIWDTAGQERFR IT+AYYRG+MGILLVYDV+D++SF NV NWMRQIE +AS VN L+GNKCDV +R VS EQG+ LA E R++FFETSA+ NVNV EAF +A D+ LR+ ++ +G +K+G + +CC
Sbjct: 11 SKYDHLIKLLLIGDSGVGKSCLLLRYSEDSFTPSFITTIGIDFKIKSLPLEDKKLKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFANVKNWMRQIEQHASESVNKILIGNKCDVDPADRRVSLEQGRKLAEEY--RIKFFETSAKENVNVDEAFYTVARDIALRIDNEVDLTASG-KNVKIGPGVGPAGGKECC 210
BLAST of mRNA_C-linearis_contig103.839.1 vs. uniprot
Match: A0A6A2YIZ8_HIBSY (Ras-related protein RABE1e n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2YIZ8_HIBSY) HSP 1 Score: 235 bits (600), Expect = 2.150e-69 Identity = 122/204 (59.80%), Postives = 155/204 (75.98%), Query Frame = 2 Query: 344 YDHLVKLLVIGDSGVGKSCLLLRYSDGQFSGSYISTIGIDFKIKTALLMGRKVKLQIWDTAGQERFRNITSAYYRGSMGILLVYDVSDDKSFRNVSNWMRQIELNASPDVNITLVGNKCDVGDDERAVSFEQGQALAAERGERVRFFETSARSNVNVTEAFEGLATDVILRLQSQDQAAIAGVPTLKLGKEEPKSKLA---DCC 946
YD L+KLL+IGDSGVGKSCLLLR+SDG F+ S+I+TIGIDFKI+T L G++VKLQIWDTAGQERFR IT+AYYRG+MGILLVYDV+D+ SF N+ NW+R IE +AS +VN LVGNK D+ + +RAV QGQALA E G ++FFETSA++N+NV E F +A+D+ RL D A +K+ KE+P + A +CC
Sbjct: 12 YDFLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSQGQALADEYG--IKFFETSAKTNLNVEEVFFSIASDIKQRLTESDNKAEPAA--IKINKEDPGASSAQKSNCC 211
BLAST of mRNA_C-linearis_contig103.839.1 vs. uniprot
Match: H3G925_PHYRM (Uncharacterized protein n=19 Tax=Oomycota TaxID=4762 RepID=H3G925_PHYRM) HSP 1 Score: 235 bits (599), Expect = 2.550e-69 Identity = 119/207 (57.49%), Postives = 153/207 (73.91%), Query Frame = 2 Query: 326 MYSTTQYDHLVKLLVIGDSGVGKSCLLLRYSDGQFSGSYISTIGIDFKIKTALLMGRKVKLQIWDTAGQERFRNITSAYYRGSMGILLVYDVSDDKSFRNVSNWMRQIELNASPDVNITLVGNKCDVGDDERAVSFEQGQALAAERGERVRFFETSARSNVNVTEAFEGLATDVILRLQSQDQAAIAGVPTLKLGKEEPKSKLADCC 946
M +++YD L+KLL+IGDSGVGKSC+LLRYSD F+ S+I+TIGIDFK+KT + G+++KLQIWDTAGQERFR IT+AYYRG+MGILLVYDV+DD SF+N+ NWM QI NAS +VN L+GNKCDV ERAV+ +QGQ LA E G ++FFETSA+SN N+ EAF +A D+ RL + + K +E + + D C
Sbjct: 1 MVHSSKYDLLIKLLLIGDSGVGKSCVLLRYSDDSFTTSFITTIGIDFKVKTIDVDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDDHSFQNIRNWMTQIRQNASSNVNKILIGNKCDVDPSERAVTTKQGQDLADEFG--IKFFETSAKSNKNIDEAFRSIAVDIQKRLAESEHDRLDVANGSKFRVDESQEQAKDSC 205
BLAST of mRNA_C-linearis_contig103.839.1 vs. uniprot
Match: Q019D2_OSTTA (Small GTPase superfamily, Rab type n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q019D2_OSTTA) HSP 1 Score: 235 bits (599), Expect = 3.100e-69 Identity = 124/201 (61.69%), Postives = 153/201 (76.12%), Query Frame = 2 Query: 344 YDHLVKLLVIGDSGVGKSCLLLRYSDGQFSGSYISTIGIDFKIKTALLMGRKVKLQIWDTAGQERFRNITSAYYRGSMGILLVYDVSDDKSFRNVSNWMRQIELNASPDVNITLVGNKCDVGDDERAVSFEQGQALAAERGERVRFFETSARSNVNVTEAFEGLATDVILRLQSQDQAAIAGVPTLKLGKEEPKSKLADCC 946
YDHL+KLL+IGDSGVGKSCLLLR+SD QF+ S+I+TIGIDFKIKT L G++VKLQIWDTAGQERFR IT+AYYRG+MGILLVYDVSD++SF NV WMR IE +AS +VN L+GNKCDV +D+R +S +GQALA E G + FFETSA+S+VNV +AF +A D+ RL + + LG + +K A CC
Sbjct: 18 YDHLLKLLLIGDSGVGKSCLLLRFSDDQFTTSFITTIGIDFKIKTVELGGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVSDERSFENVRGWMRNIEQHASSNVNKILIGNKCDVKEDKRVISKARGQALADEFG--IPFFETSAKSSVNVNDAFMTIAGDIKNRLTGSK--GLGAPNAINLG-DRAATKRASCC 213
BLAST of mRNA_C-linearis_contig103.839.1 vs. uniprot
Match: A0A5J4Y2D1_9CHLO (Rab8-family small GTPase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y2D1_9CHLO) HSP 1 Score: 234 bits (598), Expect = 4.630e-69 Identity = 122/207 (58.94%), Postives = 156/207 (75.36%), Query Frame = 2 Query: 344 YDHLVKLLVIGDSGVGKSCLLLRYSDGQFSGSYISTIGIDFKIKTALLMGRKVKLQIWDTAGQERFRNITSAYYRGSMGILLVYDVSDDKSFRNVSNWMRQIELNASPDVNITLVGNKCDVGDDERAVSFEQGQALAAERGERVRFFETSARSNVNVTEAFEGLATDVILRLQSQDQA-----AIAGVPTLKLGKE-EPKSKLADCC 946
YD+L+KLL+IGDSGVGKSCLLLR+S+ F+ S+I+TIGIDFKIK LL + +KLQIWDTAGQERFR ITSAYYRG+MGILLVYDV+DD SF N+ NWMR IE +AS +VN LVGNKCD+ + +R V + +GQALA E G ++FFETSA+SN+ V E F+ +A DV+LRL+ QA A +G +K+ ++ K + CC
Sbjct: 10 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTSSFITTIGIDFKIKKILLDNKWIKLQIWDTAGQERFRTITSAYYRGAMGILLVYDVTDDASFNNIRNWMRNIEQHASDNVNKVLVGNKCDMDESKRVVPYSKGQALADEFG--IQFFETSAKSNLKVDEVFQSVAKDVMLRLRETQQAGGGAPASSGGTRVKVDQQGSAKPSSSGCC 214
BLAST of mRNA_C-linearis_contig103.839.1 vs. uniprot
Match: I1HT75_BRADI (Uncharacterized protein n=16 Tax=Poaceae TaxID=4479 RepID=I1HT75_BRADI) HSP 1 Score: 234 bits (597), Expect = 6.700e-69 Identity = 120/206 (58.25%), Postives = 157/206 (76.21%), Query Frame = 2 Query: 344 YDHLVKLLVIGDSGVGKSCLLLRYSDGQFSGSYISTIGIDFKIKTALLMGRKVKLQIWDTAGQERFRNITSAYYRGSMGILLVYDVSDDKSFRNVSNWMRQIELNASPDVNITLVGNKCDVGDDERAVSFEQGQALAAERGERVRFFETSARSNVNVTEAFEGLATDVILRLQSQDQAAIAGVPTLKL-----GKEEPKSKLADCC 946
YD+L+KLL+IGDSGVGKSCLLLR+SDG F+ S+I+TIGIDFKI+T L G+++KLQIWDTAGQERFR IT+AYYRG+MGILLVYDV+D+ SF N+ NW+R IE +AS +VN L+GNK D+ + +RAVS QGQALA E G ++FFETSA++N+NV + F +A D+ RL D T+K+ G E+P+S+ + CC
Sbjct: 13 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLIGNKADMDESKRAVSTAQGQALADEYG--IKFFETSAKTNLNVEQVFFSIARDIKQRLAETDSKPED--QTIKINKTGQGSEDPESQKSACC 214 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.839.1 >prot_C-linearis_contig103.839.1 ID=prot_C-linearis_contig103.839.1|Name=mRNA_C-linearis_contig103.839.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=208bp MYSTTQYDHLVKLLVIGDSGVGKSCLLLRYSDGQFSGSYISTIGIDFKIKback to top mRNA from alignment at C-linearis_contig103:326997..336823+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig103.839.1 ID=mRNA_C-linearis_contig103.839.1|Name=mRNA_C-linearis_contig103.839.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=9827bp|location=Sequence derived from alignment at C-linearis_contig103:326997..336823+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig103:326997..336823+ >mRNA_C-linearis_contig103.839.1 ID=mRNA_C-linearis_contig103.839.1|Name=mRNA_C-linearis_contig103.839.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1248bp|location=Sequence derived from alignment at C-linearis_contig103:326997..336823+ (Chordaria linearis ClinC8C monoicous)back to top |