Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 645 |
| Cds size | 423 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927374.5497518-UTR-C-linearis_contig103:261281..261386 | 1622927374.5497518-UTR-C-linearis_contig103:261281..261386 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig103 261282..261386 + |
| 1690879662.2109897-UTR-C-linearis_contig103:261281..261386 | 1690879662.2109897-UTR-C-linearis_contig103:261281..261386 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig103 261282..261386 + |
| 1622927374.5721128-UTR-C-linearis_contig103:261809..261926 | 1622927374.5721128-UTR-C-linearis_contig103:261809..261926 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig103 261810..261926 + |
| 1690879662.2279072-UTR-C-linearis_contig103:261809..261926 | 1690879662.2279072-UTR-C-linearis_contig103:261809..261926 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig103 261810..261926 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927374.5601802-CDS-C-linearis_contig103:261386..261809 | 1622927374.5601802-CDS-C-linearis_contig103:261386..261809 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig103 261387..261809 + |
| 1690879662.2197273-CDS-C-linearis_contig103:261386..261809 | 1690879662.2197273-CDS-C-linearis_contig103:261386..261809 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig103 261387..261809 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.833.1 >prot_C-linearis_contig103.833.1 ID=prot_C-linearis_contig103.833.1|Name=mRNA_C-linearis_contig103.833.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=141bp
MPPHQSTNCLMSQPNHANAQALFRRSSDVLHELIKGMNIGVLLTRGRGLT
LNSVREVFSRVRETPTNAHAWSLNCSRDDDSQHVDDRPEPLQFNEETPFV
IQQRDFPTPGERWPAHAPLPFRSPSPPCCQLQYLRSFVSR* back to topmRNA from alignment at C-linearis_contig103:261282..261926+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig103.833.1 ID=mRNA_C-linearis_contig103.833.1|Name=mRNA_C-linearis_contig103.833.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=645bp|location=Sequence derived from alignment at C-linearis_contig103:261282..261926+ (Chordaria linearis ClinC8C monoicous)
TGAGCGAAGGTGTTGCCCATACTTGAGCTGCCCCACAAACAAAGGGTGAT
CTACAAGGGTGGAGACGCGACTCGAGAATACGAGATCACGTTCAGCAAGT
AATCCATGCCTCCACATCAGAGTACAAATTGTCTGATGAGCCAGCCAAAT
CATGCGAACGCCCAAGCGCTCTTCCGCAGATCCAGTGACGTGCTCCACGA
ACTCATCAAGGGTATGAATATTGGCGTTTTGTTAACCCGTGGGCGCGGAC
TTACTCTAAATAGCGTGCGCGAGGTATTCAGCCGCGTGCGTGAAACTCCG
ACAAACGCACATGCCTGGTCGTTGAACTGCAGCCGCGACGACGACAGCCA
ACACGTTGATGACCGTCCAGAGCCACTTCAGTTCAACGAAGAGACCCCCT
TCGTGATCCAGCAGAGAGATTTCCCGACACCGGGGGAGCGTTGGCCAGCC
CACGCTCCTCTTCCCTTTCGCTCACCCTCCCCCCCCTGCTGCCAACTTCA
ATATCTCCGCTCCTTCGTGTCTCGTTGAGAATATCGGTGGGGAGCGAGTG
GACAGGAGGACGCCCAAACCCGCTGTTAGCCAGCACAATGGCAGCCATTT
CGTCTCGTTGATACACGGGCAAGGAGCAAGAAGGGGCAAGAAGCA back to topCoding sequence (CDS) from alignment at C-linearis_contig103:261282..261926+ >mRNA_C-linearis_contig103.833.1 ID=mRNA_C-linearis_contig103.833.1|Name=mRNA_C-linearis_contig103.833.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at C-linearis_contig103:261282..261926+ (Chordaria linearis ClinC8C monoicous)
ATGCCTCCACATCAGAGTACAAATTGTCTGATGAGCCAGCCAAATCATGC
GAACGCCCAAGCGCTCTTCCGCAGATCCAGTGACGTGCTCCACGAACTCA
TCAAGGGTATGAATATTGGCGTTTTGTTAACCCGTGGGCGCGGACTTACT
CTAAATAGCGTGCGCGAGGTATTCAGCCGCGTGCGTGAAACTCCGACAAA
CGCACATGCCTGGTCGTTGAACTGCAGCCGCGACGACGACAGCCAACACG
TTGATGACCGTCCAGAGCCACTTCAGTTCAACGAAGAGACCCCCTTCGTG
ATCCAGCAGAGAGATTTCCCGACACCGGGGGAGCGTTGGCCAGCCCACGC
TCCTCTTCCCTTTCGCTCACCCTCCCCCCCCTGCTGCCAACTTCAATATC
TCCGCTCCTTCGTGTCTCGTTGAATGCCTCCACATCAGAGTACAAATTGT
CTGATGAGCCAGCCAAATCATGCGAACGCCCAAGCGCTCTTCCGCAGATC
CAGTGACGTGCTCCACGAACTCATCAAGGGTATGAATATTGGCGTTTTGT
TAACCCGTGGGCGCGGACTTACTCTAAATAGCGTGCGCGAGGTATTCAGC
CGCGTGCGTGAAACTCCGACAAACGCACATGCCTGGTCGTTGAACTGCAG
CCGCGACGACGACAGCCAACACGTTGATGACCGTCCAGAGCCACTTCAGT
TCAACGAAGAGACCCCCTTCGTGATCCAGCAGAGAGATTTCCCGACACCG
GGGGAGCGTTGGCCAGCCCACGCTCCTCTTCCCTTTCGCTCACCCTCCCC
CCCCTGCTGCCAACTTCAATATCTCCGCTCCTTCGTGTCTCGTTGA back to top
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