mRNA_C-linearis_contig103.829.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_C-linearis_contig103.829.1 vs. uniprot
Match: D7G450_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G450_ECTSI) HSP 1 Score: 211 bits (538), Expect = 1.030e-58 Identity = 119/198 (60.10%), Postives = 138/198 (69.70%), Query Frame = 2 Query: 581 CVCVLPSENAPVLPKLDKRLLPAFGALCAADPELRRMYPVVAGVAVKAMLEAKTMRGLFQLAEEVRVDVDTCTSKDAVVQALLASGKSLVPGPAVQGRAL-----PGP------QAAPALVHDATTDRAALVGLFNDTGGASRKNSAGWGTPAPLGEWYGVTMDGVGRFLSLALGENNLDGPIPSAPGNLTPLEYLTL 1141
CV LP E+ PVL LDKRLLPAFGALC+A+PELRRMY VAGVAV+AMLE +TM+GLFQLAEEV VDVD CTSK++V+QALLASGK L+P A G+A+ P P +A PA V DA TDR L+ LFN T G S S WGT + LGEWYGVT++ GR L L +NNL GPIP + G LT L L L
Sbjct: 191 CVRALPPESVPVLSNLDKRLLPAFGALCSAEPELRRMYHTVAGVAVRAMLEQQTMKGLFQLAEEVDVDVDACTSKESVIQALLASGKCLLPSGATSGQAVIKSNPPVPTRVSPVKAMPAPVRDARTDRTVLMELFNTTKGPSWTTSTAWGTSSSLGEWYGVTVNAEGRVTKLDLEKNNLTGPIPPSLGGLTALLLLRL 388
BLAST of mRNA_C-linearis_contig103.829.1 vs. uniprot
Match: A0A6H5JWQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWQ1_9PHAE) HSP 1 Score: 177 bits (450), Expect = 1.720e-48 Identity = 95/168 (56.55%), Postives = 117/168 (69.64%), Query Frame = 2 Query: 581 CVCVLPSENAPVLPKLDKRLLPAFGALCAADPELRRMYPVVAGVAVKAMLEAKTMRGLFQLAEEVRVDVDTCTSKDAVVQALLASGKSLVPGPAVQGRALPGPQAAPALVHDATTDRAALVGLFNDTGGASRKNSAGWGTPAPLGEWYGVTMDGVGRFLSLALGENNL 1084
CV LP E+APVL LD+R+LPAF ALC+A+PELR MYP VAG V AMLE KT+R LF LA+ V VDV++CTS +A+VQ LL+SGK+L+PG V +ATTDR+AL+ LFN T G+S N GWGT APL +W+GVT+DG GR +L LG N L
Sbjct: 54 CVLALPPESAPVLSNLDERILPAFCALCSAEPELRYMYPKVAGAVVGAMLEQKTIRDLFHLADTVGVDVESCTSHEAMVQVLLSSGKALLPGS----------------VPNATTDRSALMELFNATKGSSWTNKTGWGTSAPLQQWHGVTVDGAGRVTTLKLGWNKL 205
BLAST of mRNA_C-linearis_contig103.829.1 vs. uniprot
Match: A0A6H5K720_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K720_9PHAE) HSP 1 Score: 183 bits (464), Expect = 3.160e-47 Identity = 107/219 (48.86%), Postives = 124/219 (56.62%), Query Frame = 2 Query: 581 CVCVLPSENAPVLPKLDKRLLPAFGALCAADPELRRMYPVVAGVAVKAMLEAKTMRGLFQLAEEVRVDVDTCTSKDAVVQALLASGKSLVPGPAVQGRALPGPQAAPAL-------------------------------VHDATTDRAALVGLFNDTGGASRKNSAGWGTPAPLGEWYGVTMDGVGRFLSLALGENNLDGPIPSAPGNLTPLEYLTLY 1144
CVC LP PVLP LDKRLLPAFG LCA +PE+ RMYP V GVA +A+L +TMR LF+LA+EV VDV CTSKD V+Q LLASGK+L PA +A+ Q L DA+TDRAAL+ LF T G S K WGT APLGEWYGVT+D GR L LG+N L G +P LT L L L+
Sbjct: 292 CVCALPPVAEPVLPDLDKRLLPAFGTLCATEPEIYRMYPEVGGVAARALLAIQTMRDLFELADEVDVDVAKCTSKDEVIQILLASGKALFRAPATGVKAMLEGQTVSDLWLLARENDVDMDRCKPLVIKILLGSGKDLKPTRDASTDRAALLALFIATNGPSWKKGTAWGTSAPLGEWYGVTVDDDGRVSQLELGDNGLSGALPPELARLTALTVLDLH 510
BLAST of mRNA_C-linearis_contig103.829.1 vs. uniprot
Match: D8LD84_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD84_ECTSI) HSP 1 Score: 172 bits (437), Expect = 8.170e-43 Identity = 105/218 (48.17%), Postives = 119/218 (54.59%), Query Frame = 2 Query: 581 CVCVLPSENAPVLPKLDKRLLPAFGALCAADPELRRMYPVVAGVAVKAMLEAKTMRGLFQLAEEVRVDVDTCTSKDAVVQALLASGKSLVPGPAVQGRALPGPQAAPAL-------------------------------VHDATTDRAALVGLFNDTGGASRKNSAGWGTPAPLGEWYGVTMDGVGRFLSLALGENNLDGPIPSAPGNLTPLEYLTL 1141
CVC LP PVLP LDKRLLPAFG LCA +P + RMYP + GVA +A+L ++TMR LF+LA+EV VDV CTSKD V+Q LL SGK+L PA A Q L DA+TDRAAL+ LF T G S S WGT APLGEWYGVT+D GR L L EN L G IP LT L L L
Sbjct: 404 CVCALPPVAEPVLPDLDKRLLPAFGTLCATEPGIYRMYPEIGGVAARALLASQTMRDLFELADEVDVDVARCTSKDEVIQILLGSGKALFRAPATGVEAKLESQTMLDLCQLAREKDVDIDRYKTHVIKILLGSGKDLNPTRDASTDRAALLALFIATNGPSWTTSTAWGTAAPLGEWYGVTVDDDGRVSQLELRENGLSGVIPPEFARLTALTKLNL 621
BLAST of mRNA_C-linearis_contig103.829.1 vs. uniprot
Match: A0A6H5KAT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT8_9PHAE) HSP 1 Score: 167 bits (422), Expect = 4.530e-42 Identity = 97/197 (49.24%), Postives = 118/197 (59.90%), Query Frame = 2 Query: 581 CVCVLPSENAPVLPKLDKRLLPAFGALCAADPELRRMYPVVAGVAVKAMLEAKTMRGLFQLAEEVRVDVDTCTSKDAVVQALLASGKSLVPGPAVQGRALPGPQAAPALVHDATTDRAALVGLFNDTGGASRKNSA---------------------------GWGTPAPLGEWYGVTMDGVGRFLSLALGENNLDG 1090
CV VLP E+A VL LD+R+LPAF ALC+A+PELR MYP VAG V AMLE KTMR LF LA+ V VDV++CTS +A+VQ LL+SGK+L+PGP V +ATTDR+AL+ LFN T G+S N GWGT PL +W+GVT+DG GR +L L NNL G
Sbjct: 167 CVLVLPPESASVLSNLDERILPAFCALCSAEPELRCMYPKVAGAVVGAMLEQKTMRDLFHLADMVGVDVESCTSHEAMVQVLLSSGKALLPGP----------------VPNATTDRSALMELFNATNGSSWTNKTXXXXXXXXXXXXXXXXXXXXXXXXXXXGWGTSTPLQQWHGVTVDGAGRVTTLDLSGNNLSG 347
BLAST of mRNA_C-linearis_contig103.829.1 vs. uniprot
Match: A0A6H5K3B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3B9_9PHAE) HSP 1 Score: 149 bits (375), Expect = 8.330e-36 Identity = 90/179 (50.28%), Postives = 105/179 (58.66%), Query Frame = 2 Query: 581 CVCVLPSENAPVLPKLDKRLLPAFGALCAADPELRRMYPVVAGVAVKAMLEAKTMRGLFQLAEEVRVDVDTCTSKDAVVQALLASGKSLVPGPAVQGRA---------LP-GPQAAPALVH--------DATTDRAALVGLFNDTGGASRK-------------NSAGWGTPAPLGEWY 1024
CVCVLP EN PVLP+LD RLLPAFGALCA++PELRR+YP V G AVKAMLE KTM+ LF+LA EV DV CTSKD V++ L S + LVP A + LP G APA+V +TD AL+ L+ T G K N GWGT APLG+WY
Sbjct: 231 CVCVLPPENVPVLPELDSRLLPAFGALCASEPELRRLYPDVGGAAVKAMLEEKTMQSLFELATEVGADVTACTSKDGVIEILSTSERDLVPTQATACKGVVEEVVRTPLPSGKGPAPAVVAPIPAPPVGSTSTDMGALMALYFQTNGPPEKKGRLWAAAKGGWRNRRGWGTFAPLGDWY 409
BLAST of mRNA_C-linearis_contig103.829.1 vs. uniprot
Match: A0A6H5KIE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE6_9PHAE) HSP 1 Score: 118 bits (295), Expect = 2.150e-27 Identity = 66/107 (61.68%), Postives = 82/107 (76.64%), Query Frame = 1 Query: 55 DFRAGLGGIGAAAAAEIAEVCSEVRGVERDLASVRPSVEECRAENMELFESFAGSLEAAQHGIEIMRSSPLKEAEEVFLKDFEASNGDVEFLKDARSKVMTALVQGH 375
D R+GLG IG A AE + ++VR V+RDLASVR SVE+CRAENM F SF LEAA+ GIE+MR++PL+EA+ + LK+FEAS G+V FL+ A SK MTALVQGH
Sbjct: 5 DHRSGLGAIGTAVMAEATGIHADVREVKRDLASVRESVEDCRAENMVFFASFTAGLEAARQGIELMRNAPLEEAQ-MALKNFEASKGNVRFLETAHSKAMTALVQGH 110
BLAST of mRNA_C-linearis_contig103.829.1 vs. uniprot
Match: A0A6H5KPC4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPC4_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 3.200e-14 Identity = 44/71 (61.97%), Postives = 51/71 (71.83%), Query Frame = 1 Query: 34 GLANLGSDFRAGLGGIGAAAAAEIAEVCSEVRGVERDLASVRPSVEECRAENMELFESFAGSLEAAQHGIE 246
GLA LG D R+GLG IG A AE + ++VR V+RDLASVR SVE+CRAENM F SF LEAA+ GIE
Sbjct: 21 GLATLGRDLRSGLGAIGTAVMAEATGIHADVREVKRDLASVRESVEDCRAENMVFFASFTAGLEAARQGIE 91
BLAST of mRNA_C-linearis_contig103.829.1 vs. uniprot
Match: A0A6H5K3D6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3D6_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 4.260e-14 Identity = 40/74 (54.05%), Postives = 49/74 (66.22%), Query Frame = 2 Query: 920 TTDRAALVGLFNDTGGASRKNSAGWGTPAPLGEWYGVTMDGVGRFLSLALGENNLDGPIPSAPGNLTPLEYLTL 1141
+TDRAALV LFN TGGA+ K + W T APLG+WYGV ++ GR + L+L NNL G IP G+L L L L
Sbjct: 10 STDRAALVALFNATGGANWKKNTKWNTDAPLGQWYGVEVNDAGRVVKLSLRYNNLKGHIPRQLGDLGALMTLNL 83
BLAST of mRNA_C-linearis_contig103.829.1 vs. uniprot
Match: A0A7X4J6B9_9BACT (BIG2 domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4J6B9_9BACT) HSP 1 Score: 74.3 bits (181), Expect = 4.230e-10 Identity = 41/91 (45.05%), Postives = 52/91 (57.14%), Query Frame = 2 Query: 902 ALVHDATTDRAALVGLFNDTGGASRKNSAGWGTPAPLGEWYGVTMDGVGRFLSLALG----------ENNLDGPIPSAPGNLTPLEYLTLY 1144
A A+TDRAALV L+ TGG + NS W T APLGEW+GVT + GR ++L + +NN+ GPIP GNL LE + Y
Sbjct: 132 AATDSASTDRAALVALYEATGGPNWLNSNNWLTDAPLGEWFGVTTNHEGRVVALEMTYYDWDTGQWIDNNISGPIPPELGNLANLERMQFY 222 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.829.1 >prot_C-linearis_contig103.829.1 ID=prot_C-linearis_contig103.829.1|Name=mRNA_C-linearis_contig103.829.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=225bp MYPVVAGVAVKAMLEAKTMRGLFQLAEEVRVDVDTCTSKDAVVQALLASGback to top mRNA from alignment at C-linearis_contig103:195418..200436+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig103.829.1 ID=mRNA_C-linearis_contig103.829.1|Name=mRNA_C-linearis_contig103.829.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5019bp|location=Sequence derived from alignment at C-linearis_contig103:195418..200436+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig103:195418..200436+ >mRNA_C-linearis_contig103.829.1 ID=mRNA_C-linearis_contig103.829.1|Name=mRNA_C-linearis_contig103.829.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1350bp|location=Sequence derived from alignment at C-linearis_contig103:195418..200436+ (Chordaria linearis ClinC8C monoicous)back to top |