mRNA_C-linearis_contig103.828.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig103.828.1 vs. uniprot
Match: D8LKD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD5_ECTSI) HSP 1 Score: 289 bits (739), Expect = 2.830e-89 Identity = 144/162 (88.89%), Postives = 149/162 (91.98%), Query Frame = 1 Query: 43 RARGSA--DEGKPVSRQLSRSYFVPRSLEGYERHLRQIHCEGYLQRQSRTSGTWRRRWFLLKDGYLSYFQDQEEAEVYRSKDGDSEFHHHPSSQRQLSLDCVEAVRTEEKIGPLVFRVISSHRDDLVLRAESKEGMNDWLFGFHRALASIIMRVIENKQGAG 522
R RG A DEG+PVSRQLSRSYFVPRSLEGYERHLRQIHCEGYLQRQSRTSG WRRRWFLLKDGYLSYFQDQEEAE YRSK+G S+FHHHPSS RQLSLDCVEAVRTEEKI PLVFRVISSHRDDLVLRAESKE MNDWLFGFHRALASII RV+ NK+G G
Sbjct: 48 RRRGGAVGDEGRPVSRQLSRSYFVPRSLEGYERHLRQIHCEGYLQRQSRTSGAWRRRWFLLKDGYLSYFQDQEEAEGYRSKEGGSQFHHHPSSLRQLSLDCVEAVRTEEKIRPLVFRVISSHRDDLVLRAESKEAMNDWLFGFHRALASIIARVVGNKRGGG 209
BLAST of mRNA_C-linearis_contig103.828.1 vs. uniprot
Match: A0A024GTT7_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GTT7_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 7.860e-15 Identity = 50/140 (35.71%), Postives = 77/140 (55.00%), Query Frame = 1 Query: 91 SRSYFVPRSLEGYERHLRQIHCEGYLQRQS-RTSGTWRRRWFLLKDGYLSYFQDQEEAEVYRSKDGDSEFHHHPSSQRQL-SLDCVEAVRTEEKIGPLVFRVISSHRDDLVLRAESKEGMNDWLFGFHRALASIIMRVIE 504
S SYF PR+L G +H EG L++QS + W++RWF+++ L Y++ + D+ H P R + LD V++V T + G F++ HR VLRAESK+ M DWLF F R++A+II +++
Sbjct: 586 SASYFQPRTLAG------PVHLEGCLEKQSVKNRSVWKQRWFVMQTSQLIYYKSARDV-----SSSDAITHPRPPGCRGIIELDQVDSVTTAKDFGVGAFQIRCQHRK-YVLRAESKDRMQDWLFNFQRSIANIISMLLQ 713
BLAST of mRNA_C-linearis_contig103.828.1 vs. uniprot
Match: A0A7S1GM84_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GM84_CYCTE) HSP 1 Score: 51.6 bits (122), Expect = 1.900e-5 Identity = 28/89 (31.46%), Postives = 48/89 (53.93%), Query Frame = 1 Query: 316 QRQLSLDCVEAVR-TEEKIGPLVFRVISSHRDD-------------------LVLRAESKEGMNDWLFGFHRALASIIMRVIENKQGAG 522
++++SLDCV AVR TE + G F +++ DD L+LRA++ + +N+WLF FHR++AS + +++ G
Sbjct: 14 EKRVSLDCVGAVRSTELEYGQCSFELLALREDDELDVSTGNARSVSNDRTDSLILRAQNPDELNEWLFQFHRSIASFMRNIMDVMSNRG 102
BLAST of mRNA_C-linearis_contig103.828.1 vs. uniprot
Match: A0A4Y2M4L3_ARAVE (Uncharacterized protein CG43867 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2M4L3_ARAVE) HSP 1 Score: 53.5 bits (127), Expect = 4.100e-5 Identity = 40/116 (34.48%), Postives = 54/116 (46.55%), Query Frame = 1 Query: 160 GYLQRQSRTSGTWRRRWFLLKDGYLSYFQDQEEAEVYRSKDGDSEFHHHPSSQRQLSLDCVEAVRTEEKIGPLVFRVISSHRDDLVLRAESKEGMNDWLFGFHRALASIIMRVIEN 507
GYL + TWRRRWF+LKDG LSY++ Q + + R G Q+ LD V V E G F V +S R L A+S M +W+ + L ++I R N
Sbjct: 647 GYLTKLGGKLKTWRRRWFVLKDGILSYYKSQND--IGRKPQG------------QILLDDVSRVNRAE--GASTFEVATSKRT-YYLTADSNSTMEEWI----KVLQNVIRRNTNN 741
BLAST of mRNA_C-linearis_contig103.828.1 vs. uniprot
Match: F0WZ08_9STRA (Protein phosphatase 1E putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WZ08_9STRA) HSP 1 Score: 53.1 bits (126), Expect = 5.390e-5 Identity = 26/60 (43.33%), Postives = 40/60 (66.67%), Query Frame = 1 Query: 325 LSLDCVEAVRTEEKIGPLVFRVISSHRDDLVLRAESKEGMNDWLFGFHRALASIIMRVIE 504
+ LD V++V T ++ G F++ HR VLRAESK+ M DWLF F R++A+II +++
Sbjct: 431 IELDQVDSVTTAKEFGVGAFQIRCHHRK-YVLRAESKDRMQDWLFNFQRSIANIISMLLQ 489
BLAST of mRNA_C-linearis_contig103.828.1 vs. uniprot
Match: A0A162P3D7_9CRUS (Pleckstrin domain-containing family H member 1 n=21 Tax=Daphnia TaxID=6668 RepID=A0A162P3D7_9CRUS) HSP 1 Score: 52.8 bits (125), Expect = 7.650e-5 Identity = 37/122 (30.33%), Postives = 62/122 (50.82%), Query Frame = 1 Query: 130 ERHLRQIHCEGYLQRQSRTSGTWRRRWFLLKDGYLSYFQDQEEAEVYRSKDGDSEFHHHPSSQRQLSLDCVEAVRTEEKIGPLVFRVISSHRDDLVLRAESKEGMNDWLFGFHRALASIIMR 495
ERH ++ GYL + S TWR+RWF+LK+G LSY++ Q +++ R G Q+SLD ++ R G F + +S + L A+S +++W+ R L +++ R
Sbjct: 868 ERHSDELEKSGYLTKLSGKLKTWRKRWFVLKNGTLSYWKSQ--SDLGRKPQG------------QISLD--DSCRVWRADGAATFEISTSKKTHY-LTADSSSTVDEWV----RILQNVVRR 968 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.828.1 >prot_C-linearis_contig103.828.1 ID=prot_C-linearis_contig103.828.1|Name=mRNA_C-linearis_contig103.828.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=174bp GGGRTTAINIGGRSRARGSADEGKPVSRQLSRSYFVPRSLEGYERHLRQIback to top mRNA from alignment at C-linearis_contig103:189331..191082- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig103.828.1 ID=mRNA_C-linearis_contig103.828.1|Name=mRNA_C-linearis_contig103.828.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1752bp|location=Sequence derived from alignment at C-linearis_contig103:189331..191082- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig103:189331..191082- >mRNA_C-linearis_contig103.828.1 ID=mRNA_C-linearis_contig103.828.1|Name=mRNA_C-linearis_contig103.828.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at C-linearis_contig103:189331..191082- (Chordaria linearis ClinC8C monoicous)back to top |