mRNA_C-linearis_contig103.816.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_C-linearis_contig103.816.1 vs. uniprot
Match: A0A6H5KWP8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWP8_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 3.360e-6
Identity = 46/82 (56.10%), Postives = 52/82 (63.41%), Query Frame = 3

Query:  381 SNK--SPPEEKNGPDALPGPSEVYATSVFGA-GGAKEQNAGEKSVPLVVGWGTGHLSGAAAPRGSRAPLLPSPPRPPPQPGG 617
            SNK  SPP+EK   + LPGP EVYATSVFG+ GGA E + G  + PLVVGWGTG L    AP     P  P+PPR    PGG
Sbjct:   35 SNKRASPPKEK---ERLPGPDEVYATSVFGSVGGAAEVDGGNAN-PLVVGWGTGDLP---APAEGELPS-PNPPRSLVSPGG 108

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig103.816.1 vs. uniprot

BLAST of mRNA_C-linearis_contig103.816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A6H5KWP8_9PHAE	3.360e-6	56.10	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig103:67511..69428-
coding sequence from alignment at C-linearis_contig103:67511..69428-

protein sequence of mRNA_C-linearis_contig103.816.1

>prot_C-linearis_contig103.816.1 ID=prot_C-linearis_contig103.816.1|Name=mRNA_C-linearis_contig103.816.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=226bp
MRRFTNFGKLGLLRFFTEVRARCVLQVLGTRKQFRAFTSPLYCCIYRRKT
PALEKENPQHTAYRFRLFWLVISPVREQQQVPARGKEWARRASRALGGVR
HERVRSGWGEGTKRGRKIGPVGRWLGDGTPIGRSSTQGQQSPSASFSPAP
PATARRPSASFSSISPREPRGSYRRPAGAPGDGWVAGTGGPAKETLLSAP
PRGSATAAAAAAPPADDEPLSPGGS*

mRNA from alignment at C-linearis_contig103:67511..69428-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig103.816.1 ID=mRNA_C-linearis_contig103.816.1|Name=mRNA_C-linearis_contig103.816.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1918bp|location=Sequence derived from alignment at C-linearis_contig103:67511..69428- (Chordaria linearis ClinC8C monoicous)
GACCAACTCAAACCAAGTCAATTCTGCTGTCCCCGCCTAATACTAAGTCC
TACCACTCAAAAGTCCTTTCTAAGCCCAGCAGAGCCTTATTGCACGACAT
CATACGGACTGTTTGCTCTGATAAGGGGGGGTCCTATGTACGTACTCTAT
GCGTAGATTCACAAATTTCGGAAAGCTGGGTCTCCTGCGTTTCTTCACTG
AAGTGCGGGCGCGTTGTGTGCTACAAGTATTAGGCACCAGAAAACAATTC
CGCGCGTTTACGTCGCCGCTCTACTGCTGTATTTATCGCCGTAAGACGCC
GGCCTTAGAGAAAGAAAACCCTCAGCACACTGCATACCGCTTTCGGCTTT
TCTGGTTGGTTATTTCCCCCGTCCGCGAGCAGCAACAAGTCCCCGCCCGA
GGAAAAGAATGGGCCCGACGCGCTTCCAGGGCCCTCGGAGGTGTACGCCA
CGAGCGTGTTCGGAGCGGGTGGGGCGAAGGAACAAAACGCGGGCGAAAAA
TCGGTCCCGTTGGTCGTTGGTGAGAGAGAGAGAGAGAAAGAGAGAGATGC
CGGGACGAGCGTGCTGTATTGGGTTGCCCTCCATACCTCGAGCTTTGGGG
CCGAATTCTACGCAGTGTGCCACCAACGAGTCGACTGCGACACATCATGT
CTTGGGTTATTTTGCTGTTTCGGTCTCTGCGTAATCCGGGAATTGTCCTC
GGACAAAGCGCACGTAGGTATGTAGGCGGCTGAAGTGTCAAGGTGTCAAG
GTCTGCTTGATCGTCTCGCGGGAAAATGTCACCCCATCCGTGTGTGTTCG
ATAACGACTCTTGTCTGACGCGTGGCTGTAGTAAAACGTGCTCAGCATTT
ATAGATTTTAAGTAGATACGGCAGGAGATTGTATTGCAGCATCAGAAAAT
ACCGTACGGCGGTTCGCGCTGCGATGGCCCTTCGCATTGGTGTGCCCTCT
GCTCTCTGCTGAACGTCTAGTGGCCTGTCTTGCAGGCAGTAGTCTACGCA
GGACAGTCAGCAAAGATATAGGATAAAGTATGGAGTTGGCGGAATGGGGG
GGGGGGTCGGGTGTTAGGGTTAGGGTTACGGAACCCCCCTCTCTATTTCT
AATATGCACTCCAGCAGCGGACCCTCTGTCATCGATACGGCATGCCGCCA
TCCTTTCATGATATGGGGTATTAAATCCTAGTTTATATACTCGAGGACCA
AATTTTGCACATCTTCGTCAACACGGAGCCCCTTTCCCACAAGCTGTAGC
ACGATTTGACGGCAAAACACGTCAGAACTTTTGCATCATCTTACATACAT
GCGCGTGAAAAAGAAACAAAGAGACGATTTGACGGCAAAACACGTCAGAA
CTTTTGCATCATCTTACATACATGCGCGTGAAAAAGAAACAAAGAGAGTG
GTTTCTTGTTGGAGCAAAAATAGTGTGTGGTAGCGGTTTTGTCTGATGAA
CATCTCGCCTTCCCTTCCCCCCTCCGCAGGTTGGGGGACGGGACACCTAT
CGGGCGCAGCAGCACCCAGGGGCAGCAGAGCCCCTCTGCTTCCTTCTCCC
CCGCGCCCCCCGCCACAGCCCGGCGGCCCTCTGCTTCCTTCTCCTCCATC
AGTCCCAGGGAACCCCGTGGATCATATCGCCGCCCCGCGGGGGCACCCGG
CGATGGGTGGGTGGCAGGGACAGGGGGCCCCGCCAAGGAGACCCTTCTTT
CAGCACCCCCCAGGGGCTCGGCCACCGCCGCCGCCGCCGCCGCCCCCCCA
GCAGATGATGAACCACTATCTCCCGGGGGATCCTAGAGGGGGTCATCCCC
CCCCTCCGCCCCACCTTTTCGTGCCCCCGCAGCAGCAGCAGCGGCAGCAG
CCGATGCCGATGCCACCGCGCAGCATGCTGCAGCAGCCGGTGTACCAGGG
AATGATGCAAGGAGGAGG

Coding sequence (CDS) from alignment at C-linearis_contig103:67511..69428-

>mRNA_C-linearis_contig103.816.1 ID=mRNA_C-linearis_contig103.816.1|Name=mRNA_C-linearis_contig103.816.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1356bp|location=Sequence derived from alignment at C-linearis_contig103:67511..69428- (Chordaria linearis ClinC8C monoicous)
ATGCGTAGATTCACAAATTTCGGAAAGCTGGGTCTCCTGCGTTTCTTCAC
TGAAGTGCGGGCGCGTTGTGTGCTACAAGTATTAGGCACCAGAAAACAAT
TCCGCGCGTTTACGTCGCCGCTCTACTGCTGTATTTATCGCCGTAAGACG
CCGGCCTTAGAGAAAGAAAACCCTCAGCACACTGCATACCGCTTTCGGCT
TTTCTGGTTGGTTATTTCCCCCGTCCGCGAGCAGCAACAAGTCCCCGCCC
GAGGAAAAGAATGGGCCCGACGCGCTTCCAGGGCCCTCGGAGGTGTACGC
CACGAGCGTGTTCGGAGCGGGTGGGGCGAAGGAACAAAACGCGGGCGAAA
AATCGGTCCCGTTGGTCGTTGATGCGTAGATTCACAAATTTCGGAAAGCT
GGGTCTCCTGCGTTTCTTCACTGAAGTGCGGGCGCGTTGTGTGCTACAAG
TATTAGGCACCAGAAAACAATTCCGCGCGTTTACGTCGCCGCTCTACTGC
TGTATTTATCGCCGTAAGACGCCGGCCTTAGAGAAAGAAAACCCTCAGCA
CACTGCATACCGCTTTCGGCTTTTCTGGTTGGTTATTTCCCCCGTCCGCG
AGCAGCAACAAGTCCCCGCCCGAGGAAAAGAATGGGCCCGACGCGCTTCC
AGGGCCCTCGGAGGTGTACGCCACGAGCGTGTTCGGAGCGGGTGGGGCGA
AGGAACAAAACGCGGGCGAAAAATCGGTCCCGTTGGTCGTTGGTTGGGGG
ACGGGACACCTATCGGGCGCAGCAGCACCCAGGGGCAGCAGAGCCCCTCT
GCTTCCTTCTCCCCCGCGCCCCCCGCCACAGCCCGGCGGCCCTCTGCTTC
CTTCTCCTCCATCAGTCCCAGGGAACCCCGTGGATCATATCGCCGCCCCG
CGGGGGCACCCGGCGATGGGTGGGTGGCAGGGACAGGGGGCCCCGCCAAG
GAGACCCTTCTTTCAGCACCCCCCAGGGGCTCGGCCACCGCCGCCGCCGC
CGCCGCCCCCCCAGCAGATGATGAACCACTATCTCCCGGGGGATCCTAGG
TTGGGGGACGGGACACCTATCGGGCGCAGCAGCACCCAGGGGCAGCAGAG
CCCCTCTGCTTCCTTCTCCCCCGCGCCCCCCGCCACAGCCCGGCGGCCCT
CTGCTTCCTTCTCCTCCATCAGTCCCAGGGAACCCCGTGGATCATATCGC
CGCCCCGCGGGGGCACCCGGCGATGGGTGGGTGGCAGGGACAGGGGGCCC
CGCCAAGGAGACCCTTCTTTCAGCACCCCCCAGGGGCTCGGCCACCGCCG
CCGCCGCCGCCGCCCCCCCAGCAGATGATGAACCACTATCTCCCGGGGGA
TCCTAG