Homology
BLAST of mRNA_C-linearis_contig103.816.1 vs. uniprot
Match: A0A6H5KWP8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWP8_9PHAE) HSP 1 Score: 58.9 bits (141), Expect = 3.360e-6 Identity = 46/82 (56.10%), Postives = 52/82 (63.41%), Query Frame = 3 Query: 381 SNK--SPPEEKNGPDALPGPSEVYATSVFGA-GGAKEQNAGEKSVPLVVGWGTGHLSGAAAPRGSRAPLLPSPPRPPPQPGG 617
SNK SPP+EK + LPGP EVYATSVFG+ GGA E + G + PLVVGWGTG L AP P P+PPR PGG
Sbjct: 35 SNKRASPPKEK---ERLPGPDEVYATSVFGSVGGAAEVDGGNAN-PLVVGWGTGDLP---APAEGELPS-PNPPRSLVSPGG 108
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | mitochondrion |
| Exons | 2 |
| Model size | 958 |
| Cds size | 678 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927372.9328642-UTR-C-linearis_contig103:67510..67642 | 1622927372.9328642-UTR-C-linearis_contig103:67510..67642 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig103 67511..67642 - |
| 1690879661.164858-UTR-C-linearis_contig103:67510..67642 | 1690879661.164858-UTR-C-linearis_contig103:67510..67642 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig103 67511..67642 - |
| 1622927372.969724-UTR-C-linearis_contig103:69280..69428 | 1622927372.969724-UTR-C-linearis_contig103:69280..69428 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig103 69281..69428 - |
| 1690879661.1928103-UTR-C-linearis_contig103:69280..69428 | 1690879661.1928103-UTR-C-linearis_contig103:69280..69428 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig103 69281..69428 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927372.9447618-CDS-C-linearis_contig103:67642..67949 | 1622927372.9447618-CDS-C-linearis_contig103:67642..67949 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig103 67643..67949 - |
| 1690879661.177056-CDS-C-linearis_contig103:67642..67949 | 1690879661.177056-CDS-C-linearis_contig103:67642..67949 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig103 67643..67949 - |
| 1622927372.9579685-CDS-C-linearis_contig103:68909..69280 | 1622927372.9579685-CDS-C-linearis_contig103:68909..69280 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig103 68910..69280 - |
| 1690879661.1849241-CDS-C-linearis_contig103:68909..69280 | 1690879661.1849241-CDS-C-linearis_contig103:68909..69280 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig103 68910..69280 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.816.1 >prot_C-linearis_contig103.816.1 ID=prot_C-linearis_contig103.816.1|Name=mRNA_C-linearis_contig103.816.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=226bp
MRRFTNFGKLGLLRFFTEVRARCVLQVLGTRKQFRAFTSPLYCCIYRRKT
PALEKENPQHTAYRFRLFWLVISPVREQQQVPARGKEWARRASRALGGVR
HERVRSGWGEGTKRGRKIGPVGRWLGDGTPIGRSSTQGQQSPSASFSPAP
PATARRPSASFSSISPREPRGSYRRPAGAPGDGWVAGTGGPAKETLLSAP
PRGSATAAAAAAPPADDEPLSPGGS* back to topmRNA from alignment at C-linearis_contig103:67511..69428- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig103.816.1 ID=mRNA_C-linearis_contig103.816.1|Name=mRNA_C-linearis_contig103.816.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1918bp|location=Sequence derived from alignment at C-linearis_contig103:67511..69428- (Chordaria linearis ClinC8C monoicous)
GACCAACTCAAACCAAGTCAATTCTGCTGTCCCCGCCTAATACTAAGTCC
TACCACTCAAAAGTCCTTTCTAAGCCCAGCAGAGCCTTATTGCACGACAT
CATACGGACTGTTTGCTCTGATAAGGGGGGGTCCTATGTACGTACTCTAT
GCGTAGATTCACAAATTTCGGAAAGCTGGGTCTCCTGCGTTTCTTCACTG
AAGTGCGGGCGCGTTGTGTGCTACAAGTATTAGGCACCAGAAAACAATTC
CGCGCGTTTACGTCGCCGCTCTACTGCTGTATTTATCGCCGTAAGACGCC
GGCCTTAGAGAAAGAAAACCCTCAGCACACTGCATACCGCTTTCGGCTTT
TCTGGTTGGTTATTTCCCCCGTCCGCGAGCAGCAACAAGTCCCCGCCCGA
GGAAAAGAATGGGCCCGACGCGCTTCCAGGGCCCTCGGAGGTGTACGCCA
CGAGCGTGTTCGGAGCGGGTGGGGCGAAGGAACAAAACGCGGGCGAAAAA
TCGGTCCCGTTGGTCGTTGGTGAGAGAGAGAGAGAGAAAGAGAGAGATGC
CGGGACGAGCGTGCTGTATTGGGTTGCCCTCCATACCTCGAGCTTTGGGG
CCGAATTCTACGCAGTGTGCCACCAACGAGTCGACTGCGACACATCATGT
CTTGGGTTATTTTGCTGTTTCGGTCTCTGCGTAATCCGGGAATTGTCCTC
GGACAAAGCGCACGTAGGTATGTAGGCGGCTGAAGTGTCAAGGTGTCAAG
GTCTGCTTGATCGTCTCGCGGGAAAATGTCACCCCATCCGTGTGTGTTCG
ATAACGACTCTTGTCTGACGCGTGGCTGTAGTAAAACGTGCTCAGCATTT
ATAGATTTTAAGTAGATACGGCAGGAGATTGTATTGCAGCATCAGAAAAT
ACCGTACGGCGGTTCGCGCTGCGATGGCCCTTCGCATTGGTGTGCCCTCT
GCTCTCTGCTGAACGTCTAGTGGCCTGTCTTGCAGGCAGTAGTCTACGCA
GGACAGTCAGCAAAGATATAGGATAAAGTATGGAGTTGGCGGAATGGGGG
GGGGGGTCGGGTGTTAGGGTTAGGGTTACGGAACCCCCCTCTCTATTTCT
AATATGCACTCCAGCAGCGGACCCTCTGTCATCGATACGGCATGCCGCCA
TCCTTTCATGATATGGGGTATTAAATCCTAGTTTATATACTCGAGGACCA
AATTTTGCACATCTTCGTCAACACGGAGCCCCTTTCCCACAAGCTGTAGC
ACGATTTGACGGCAAAACACGTCAGAACTTTTGCATCATCTTACATACAT
GCGCGTGAAAAAGAAACAAAGAGACGATTTGACGGCAAAACACGTCAGAA
CTTTTGCATCATCTTACATACATGCGCGTGAAAAAGAAACAAAGAGAGTG
GTTTCTTGTTGGAGCAAAAATAGTGTGTGGTAGCGGTTTTGTCTGATGAA
CATCTCGCCTTCCCTTCCCCCCTCCGCAGGTTGGGGGACGGGACACCTAT
CGGGCGCAGCAGCACCCAGGGGCAGCAGAGCCCCTCTGCTTCCTTCTCCC
CCGCGCCCCCCGCCACAGCCCGGCGGCCCTCTGCTTCCTTCTCCTCCATC
AGTCCCAGGGAACCCCGTGGATCATATCGCCGCCCCGCGGGGGCACCCGG
CGATGGGTGGGTGGCAGGGACAGGGGGCCCCGCCAAGGAGACCCTTCTTT
CAGCACCCCCCAGGGGCTCGGCCACCGCCGCCGCCGCCGCCGCCCCCCCA
GCAGATGATGAACCACTATCTCCCGGGGGATCCTAGAGGGGGTCATCCCC
CCCCTCCGCCCCACCTTTTCGTGCCCCCGCAGCAGCAGCAGCGGCAGCAG
CCGATGCCGATGCCACCGCGCAGCATGCTGCAGCAGCCGGTGTACCAGGG
AATGATGCAAGGAGGAGG back to topCoding sequence (CDS) from alignment at C-linearis_contig103:67511..69428- >mRNA_C-linearis_contig103.816.1 ID=mRNA_C-linearis_contig103.816.1|Name=mRNA_C-linearis_contig103.816.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1356bp|location=Sequence derived from alignment at C-linearis_contig103:67511..69428- (Chordaria linearis ClinC8C monoicous)
ATGCGTAGATTCACAAATTTCGGAAAGCTGGGTCTCCTGCGTTTCTTCAC
TGAAGTGCGGGCGCGTTGTGTGCTACAAGTATTAGGCACCAGAAAACAAT
TCCGCGCGTTTACGTCGCCGCTCTACTGCTGTATTTATCGCCGTAAGACG
CCGGCCTTAGAGAAAGAAAACCCTCAGCACACTGCATACCGCTTTCGGCT
TTTCTGGTTGGTTATTTCCCCCGTCCGCGAGCAGCAACAAGTCCCCGCCC
GAGGAAAAGAATGGGCCCGACGCGCTTCCAGGGCCCTCGGAGGTGTACGC
CACGAGCGTGTTCGGAGCGGGTGGGGCGAAGGAACAAAACGCGGGCGAAA
AATCGGTCCCGTTGGTCGTTGATGCGTAGATTCACAAATTTCGGAAAGCT
GGGTCTCCTGCGTTTCTTCACTGAAGTGCGGGCGCGTTGTGTGCTACAAG
TATTAGGCACCAGAAAACAATTCCGCGCGTTTACGTCGCCGCTCTACTGC
TGTATTTATCGCCGTAAGACGCCGGCCTTAGAGAAAGAAAACCCTCAGCA
CACTGCATACCGCTTTCGGCTTTTCTGGTTGGTTATTTCCCCCGTCCGCG
AGCAGCAACAAGTCCCCGCCCGAGGAAAAGAATGGGCCCGACGCGCTTCC
AGGGCCCTCGGAGGTGTACGCCACGAGCGTGTTCGGAGCGGGTGGGGCGA
AGGAACAAAACGCGGGCGAAAAATCGGTCCCGTTGGTCGTTGGTTGGGGG
ACGGGACACCTATCGGGCGCAGCAGCACCCAGGGGCAGCAGAGCCCCTCT
GCTTCCTTCTCCCCCGCGCCCCCCGCCACAGCCCGGCGGCCCTCTGCTTC
CTTCTCCTCCATCAGTCCCAGGGAACCCCGTGGATCATATCGCCGCCCCG
CGGGGGCACCCGGCGATGGGTGGGTGGCAGGGACAGGGGGCCCCGCCAAG
GAGACCCTTCTTTCAGCACCCCCCAGGGGCTCGGCCACCGCCGCCGCCGC
CGCCGCCCCCCCAGCAGATGATGAACCACTATCTCCCGGGGGATCCTAGG
TTGGGGGACGGGACACCTATCGGGCGCAGCAGCACCCAGGGGCAGCAGAG
CCCCTCTGCTTCCTTCTCCCCCGCGCCCCCCGCCACAGCCCGGCGGCCCT
CTGCTTCCTTCTCCTCCATCAGTCCCAGGGAACCCCGTGGATCATATCGC
CGCCCCGCGGGGGCACCCGGCGATGGGTGGGTGGCAGGGACAGGGGGCCC
CGCCAAGGAGACCCTTCTTTCAGCACCCCCCAGGGGCTCGGCCACCGCCG
CCGCCGCCGCCGCCCCCCCAGCAGATGATGAACCACTATCTCCCGGGGGA
TCCTAG back to top
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