mRNA_C-linearis_contig103.815.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig103.815.1 vs. uniprot
Match: D8LD81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD81_ECTSI) HSP 1 Score: 891 bits (2303), Expect = 5.310e-306 Identity = 507/682 (74.34%), Postives = 540/682 (79.18%), Query Frame = 3 Query: 753 IRCDGARPCKQCEKRQLECKFSHCQRSGPNRGPIPLPGGPVSPIPVGGDVLPPAVLPAXXXXXXXXXXXXXXXXXXXXGPAPSAQMAAALSGGGITSKVDVTYLNFFLKEFNAFVPLTTQDILRDALNPSPAALTERPASGDEEYRRQNARVAVIQGCITIGALLKGQTQVVGYLRNVRESLTKSFDFVSSETMSAYMVTAYCHDLMGNAAATRNYMEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEELTHTISKAQARTEMLLKVMAELNSLLPILTRADGMSRDNASSFGALGVVLVKGVLAYILLRLGKSQEGLEVLEPVVGILAENPGLLRQVMCWHLSHCMLVIFLEHGWFKEYEIMRGIYNRLLQPEQGGQHFTVWGRGHFHDATSFPPVESLHSQGNSFLCSNPICKAINRDLSEGVEATAAAQGRFAAASNAAGPQPVINMVTGEGFLNFDSEAGVNYTNISNKPSLPGFGSSXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXXXXXGGPQGMIMSSGATATTPAALHKGAVPTRAAMSAMAAADAGKKRSLADRGGRGEGLPLPLPPSYTPSAGLPGVGSSSVVGWSCSDSAREKDGVPPGL-PGMGQVVAPPGAGGNASAPGPRTR 2795
++CDG PC+QC++RQ+EC FS C RSGP++ P P SPIP G V L A XXXXXXXXXXXXXXXX LSGGGITSKVDVTYLNFFLKEFNAFVPLTTQDILRDALNP PAALTER GDEEYRRQNARVAVIQGCITIGALLKG TQ VGYLRNVRE+LT SF FVSS+ +AYMVTAYCHDLMGNAAATRNYMEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEELT+TISKAQ VMAELNSLLPILTRADGMSRDN+SSFGALGVVLVKGVLAYILLRLG+SQ+GLEVLEPVVGILAENPGLLRQVMCWHLSHC+LVIFLEHGWFKEYEI R IYN LL+PEQGGQHF VWGRGHF DAT FPPV+SLHSQGNSFLCSNPICKAINRDLSEGVEAT AAQGRFAAASNAAGPQPVINMVTGEGFLNFDSEAGVN + S KPSLPGFGSS P PQ M+M+ A ATTPAALHKGAVPTRAAMSA++AADAGKKR L+DR +Y PSAG+PGVG+S+ GWSCS S RE +G G+ P MGQ AP A G++S+ PRTR
Sbjct: 8 VKCDGTPPCRQCQRRQIECTFSPCARSGPSKVPPP---NVASPIP-GVGVSQNGALAATALAXXXXXXXXXXXXXXXXXXXXXXXXXXXLSGGGITSKVDVTYLNFFLKEFNAFVPLTTQDILRDALNPVPAALTERSFHGDEEYRRQNARVAVIQGCITIGALLKGHTQGVGYLRNVREALTNSFHFVSSQKKNAYMVTAYCHDLMGNAAATRNYMEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEELTNTISKAQ--------VMAELNSLLPILTRADGMSRDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSHCILVIFLEHGWFKEYEITRNIYNSLLEPEQGGQHFAVWGRGHFQDATPFPPVDSLHSQGNSFLCSNPICKAINRDLSEGVEATVAAQGRFAAASNAAGPQPVINMVTGEGFLNFDSEAGVNVSTASPKPSLPGFGSSCSSGTGTSQASQGSPQPPVSMSSSFSVGQQH----------PQAMLMTP-AAATTPAALHKGAVPTRAAMSAISAADAGKKRVLSDR------------TAYVPSAGVPGVGASAGGGWSCSGSVRESEG---GVSPAMGQANAPANASGSSSSVTPRTR 651
BLAST of mRNA_C-linearis_contig103.815.1 vs. uniprot
Match: D8LD86_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD86_ECTSI) HSP 1 Score: 843 bits (2177), Expect = 6.280e-287 Identity = 464/573 (80.98%), Postives = 486/573 (84.82%), Query Frame = 3 Query: 1023 SGGGITSKVDVTYLNFFLKEFNAFVPLTTQDILRDALNPSPAALTERPASGDEEYRRQNARVAVIQGCITIGALLKGQTQVVGYLRNVRESLTKSFDFVSSETMSAYMVTAYCHDLMGNAAATRNYMEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEELTHTISKAQARTEMLLKVMAELNSLLPILTRADGMSRDNASSFGALGVVLVKGVLAYILLRLGKSQEGLEVLEPVVGILAENPGLLRQVMCWHLSHCMLVIFLEHGWFKEYEIMRGIYNRLLQPEQGGQHFTVWGRGHFHDATSFPPVESLHSQGNSFLCSNPICKAINRDLSEGVEATAAAQGRFAAASNAAGPQPVINMVTGEGFLNFDSEAGVNYTNISNKPSLPGFGSSXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXXXXXGGPQGMIMSSGATATTPAALHKGAVPTRAAMSAMAAADAGKKRSLADRGGRGEGLPLPLPPSYTPSAGLPGVGSSSVVGWSCSDSAREKDGVPPGL-PGMGQ 2738
SGGGITSKVDVTYLNFFLKEFNAFVPLTTQDILRDAL P PAALTER GDEEYRRQNARVAVIQGCITIGALLKG TQVVGYLRNVRE+LT SFDFVSSETMSAYMVTAYCHDLMGNAAATRNYMEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSA PKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEELT+TISKAQ VMAELNSLLPILTRADGMSRDN+SSFGALGVVLVKGVLAYILLRLG+SQ+GLEVLEPVVGILAENPGLLRQVMCWHLS C+LVIFLEHGWFKEYEI R IYN LL+PEQGGQHF VWGRGHF DAT FPPV+SLHSQGNSFLCSNPICKAINRDLSEGVEAT AAQGRFAAAS+AAGPQPVINMVTGEGFLNFDSEAGVN + S KPSLPGFGS XXXXXXXXXXX P PQ M+M+ A+ TTPAALHKGAVPTRAAMSA++AADAGKKR L+DR +Y PSAG+PGVG+S+ GWSCS S RE +G G+ P MGQ
Sbjct: 96 SGGGITSKVDVTYLNFFLKEFNAFVPLTTQDILRDALYPVPAALTERSFHGDEEYRRQNARVAVIQGCITIGALLKGHTQVVGYLRNVREALTNSFDFVSSETMSAYMVTAYCHDLMGNAAATRNYMEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSAIPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEELTNTISKAQ--------VMAELNSLLPILTRADGMSRDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSRCILVIFLEHGWFKEYEITRNIYNSLLEPEQGGQHFAVWGRGHFQDATPFPPVDSLHSQGNSFLCSNPICKAINRDLSEGVEATVAAQGRFAAASSAAGPQPVINMVTGEGFLNFDSEAGVNVSTASPKPSLPGFGSXXXXXXXXXXXXQGSPQPPASMSSSFSVAQQH----------PQAMLMTPAAS-TTPAALHKGAVPTRAAMSAISAADAGKKRVLSDR------------TAYVPSAGVPGVGASAGGGWSCSGSVRESEG---GVSPAMGQ 634
BLAST of mRNA_C-linearis_contig103.815.1 vs. uniprot
Match: A0A6H5K8W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W2_9PHAE) HSP 1 Score: 663 bits (1711), Expect = 8.120e-222 Identity = 338/378 (89.42%), Postives = 349/378 (92.33%), Query Frame = 3 Query: 1035 ITSKVDVTYLNFFLKEFNAFVPLTTQDILRDALNPSPAALTERPASGDEEYRRQNARVAVIQGCITIGALLKGQTQVVGYLRNVRESLTKSFDFVSSETMSAYMVTAYCHDLMGNAAATRNYMEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEELTHTISKAQARTEMLLKVMAELNSLLPILTRADGMSRDNASSFGALGVVLVKGVLAYILLRLGKSQEGLEVLEPVVGILAENPGLLRQVMCWHLSHCMLVIFLEHGWFKEYEIMRGIYNRLLQPEQGGQHFTVWGRGHFHDATSFPPVESLHSQGNSFLCSNPICKAINRDLSEGVEATAAAQ 2168
ITSKVDVTYLNFFLKEFNAFVPLTTQ ILRDALNP P ALTER GDEE+ NARVAVIQGCITIGALLKG TQV YLRNVRE+LT SFDFVSSETMSAYMVTAYCHDLMGNAAATRNYMEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAE+LT+TISKAQA VMAELNSLLPILTRADGMS+DN+SSFGALGVVLVKGVLAYILLRLG+SQ+GLEVLEPVVGILAENPGLLRQVMCWHLSHC+LVIFLEHGWF EYEI R IYN LL+PEQGG HF VWGRGHF DAT FPPV+SLHSQGNSFLCSNPICKAINRDLSEGVEAT AAQ
Sbjct: 11 ITSKVDVTYLNFFLKEFNAFVPLTTQGILRDALNPVPEALTERSFHGDEEF---NARVAVIQGCITIGALLKGHTQVAVYLRNVREALTNSFDFVSSETMSAYMVTAYCHDLMGNAAATRNYMEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEKLTNTISKAQANL-----VMAELNSLLPILTRADGMSQDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSHCILVIFLEHGWFNEYEITRNIYNSLLEPEQGGGHFAVWGRGHFQDATPFPPVDSLHSQGNSFLCSNPICKAINRDLSEGVEATVAAQ 380
BLAST of mRNA_C-linearis_contig103.815.1 vs. uniprot
Match: A0A6H5K9S8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S8_9PHAE) HSP 1 Score: 347 bits (890), Expect = 6.610e-103 Identity = 224/432 (51.85%), Postives = 236/432 (54.63%), Query Frame = 3 Query: 1143 PAALTERPASGDEEYRRQNARVA---VIQGCI---------------TIGALLKGQT--------QVVGYLRNVRESLTKSFDFVSSETMSAYMVTAYCHDLMGNAAA--------------------------------------------------------------------------------------------------------------------------------TRNYMEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQ----------VLNVLTYALYDLAHLAAEELTHTISKAQARTEMLLKVMAELNSLLPILTRADGMSRDNASSFGALGVVLVKGVLAYILLRLGKSQEGLEVLEPVVGILAENPGLLRQVMCWHLSHCMLVIF--LEHGW 1940
PAALTER GDEEYRRQ R + V+ C + + K QVVGYLRNV E+LT SFDFVSSETMSAYMVTAYCHDLMGNAAA NYMEFA+AVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQ VLNVLTYALYDLAHLAAEELT+TISKAQA T M VMAELNSLLPILTRADGMSRDN+SSFG LGVVLVKGVLAYILLRLG+SQ+GLEVLEPVVGILAENPGLLRQVMCWHLSHC+L+ LE W
Sbjct: 2 PAALTERLFHGDEEYRRQVTRASDRGVLSACTMRKADGAKGVRKNHGALKVMRKAAVVSHNPPLPQVVGYLRNVLEALTNSFDFVSSETMSAYMVTAYCHDLMGNAAAIGRFLGVGCGSSPDDMIGKFAEQLEYTPSRWREGVVVNLFKKGDKTDPGNNRGITLLNTVGKVFCKLLNDRIVGVLEKEHSISEGQAGFRKERGCVDHVFTVGRIIQGRKRAGKPTYTSTTQVALADYVGNYMEFAEAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQARSLESVRFMVLNVLTYALYDLAHLAAEELTNTISKAQAST-MAFAVMAELNSLLPILTRADGMSRDNSSSFGTLGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSHCILLALTKLESLW 432
BLAST of mRNA_C-linearis_contig103.815.1 vs. uniprot
Match: A0A6H5JUV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV1_9PHAE) HSP 1 Score: 255 bits (652), Expect = 2.000e-74 Identity = 134/144 (93.06%), Postives = 139/144 (96.53%), Query Frame = 3 Query: 1401 MEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEELTHTISKAQARTEMLLKVMAELNSLLPILTRADGMSRDNASSFGALGVVLVKGVLAYILLRLGKSQEGLEV 1832
MEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEELT+TISKAQA T M VMAELNSLLPILTRADGMS+DN+SSFGALGVVLVKGVLAYILLRLG+SQ+GLEV
Sbjct: 1 MEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEELTNTISKAQAST-MAFAVMAELNSLLPILTRADGMSQDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEV 143
BLAST of mRNA_C-linearis_contig103.815.1 vs. uniprot
Match: A0A6H5KC48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC48_9PHAE) HSP 1 Score: 158 bits (400), Expect = 1.450e-41 Identity = 73/84 (86.90%), Postives = 75/84 (89.29%), Query Frame = 3 Query: 1917 VIFLEHGWFKEYEIMRGIYNRLLQPEQGGQHFTVWGRGHFHDATSFPPVESLHSQGNSFLCSNPICKAINRDLSEGVEATAAAQ 2168
VIFLEHGWF EYEI R IYN LL+PEQGG HF VWGRGHF DAT FPPV+SLHSQGNSFLCSNPICKAINRDLSEGVEAT AAQ
Sbjct: 15 VIFLEHGWFNEYEITRNIYNSLLEPEQGGGHFAVWGRGHFQDATPFPPVDSLHSQGNSFLCSNPICKAINRDLSEGVEATVAAQ 98
BLAST of mRNA_C-linearis_contig103.815.1 vs. uniprot
Match: D7FNW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW6_ECTSI) HSP 1 Score: 155 bits (391), Expect = 2.220e-40 Identity = 79/91 (86.81%), Postives = 84/91 (92.31%), Query Frame = 3 Query: 1674 MAELNSLLPILTRADGMSRDNASSFGALGVVLVKGVLAYILLRLGKSQEGLEVLEPVVGILAENPGLLRQVMCWHLSHCMLVIF--LEHGW 1940
MAELNSLLPILTRADGMSRDN+SSFGALGVVLVKGVLAYILLRLG+SQ+GLEVLEPVVGILAENPGLLRQVMCWHLS C+L+ LE W
Sbjct: 1 MAELNSLLPILTRADGMSRDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSRCILLALTKLESLW 91
BLAST of mRNA_C-linearis_contig103.815.1 vs. uniprot
Match: A0A6H5JWQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWQ9_9PHAE) HSP 1 Score: 128 bits (322), Expect = 2.910e-31 Identity = 71/93 (76.34%), Postives = 75/93 (80.65%), Query Frame = 3 Query: 1674 MAELNSLLPILTRADGMSRDNASSFGALGVVLVKGVLAYILLRLGKS-------QEGLE---VLEPVVGILAENPGLLRQVMCWHLSHCMLVI 1922
MAELNSLLPILTRADG SRDN+SSFGALGVVLV GVLA ILLRLG S + GL VLEPVVGILAE PGLLRQVMCWHLSHC+L +
Sbjct: 1 MAELNSLLPILTRADGRSRDNSSSFGALGVVLVNGVLASILLRLGLSVSTTSWMRNGLGNVWVLEPVVGILAETPGLLRQVMCWHLSHCILSV 93
BLAST of mRNA_C-linearis_contig103.815.1 vs. uniprot
Match: A0A6H5JRN3_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRN3_9PHAE) HSP 1 Score: 134 bits (337), Expect = 1.110e-30 Identity = 161/313 (51.44%), Postives = 179/313 (57.19%), Query Frame = 3 Query: 156 MASAAEQHAAQEKIAQTLARQMEGQLAEPRGMQSPRAASPPQDQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHXXXXXXXXXXXXXXXXSAGQGSAPQGXXXXAGTSXXXXXRXXXXXXXXXXXXXXXXXSDTESEGDPNEADPAARKARKKIRRACDYCTQKKIRCDGARPCKQCEKRQLECKFSHCQRSGPNRGPIPLPGGPVSPIPVGGD-VLPPAVLPAXXXXXXXXXXXXXXXXXXXXGPAPSAQMAAALSGGGITSKVDVTYLNFFLKEFNA 1091
MASAAEQHAAQEK+A+TLA QMEGQLAEPR MQ+P+A P+DQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + G G G +XXXX X XXXXXXXXX P ARKARKKIRRACDYCTQKK++CDG PC+QC++RQ+EC FS C RSGP++ P P P+ + V + L L A P A MAAALSGGGITSKVDVTYLNFFLKEFNA
Sbjct: 1 MASAAEQHAAQEKVAETLAGQMEGQLAEPRAMQAPQAG--PRDQQQGLFLQPPGGVVPAQNPNHLQQQPQLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------ARETGATTGSGQKKTAGARNGGGTXXXXVGXESDLXXXXXXXXX----------------PEARKARKKIRRACDYCTQKKVKCDGTPPCRQCQRRQIECTFSPCARSGPSKVPPPNVANPIPGVGVSQNGALAATALAAAWDR-------------------PLA-MAAALSGGGITSKVDVTYLNFFLKEFNA 264
BLAST of mRNA_C-linearis_contig103.815.1 vs. uniprot
Match: A0A835Z8X2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8X2_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 1.820e-18 Identity = 45/82 (54.88%), Postives = 60/82 (73.17%), Query Frame = 3 Query: 1674 MAELNSLLPILTRADGMSRDNASSFGALGVVLVKGVLAYILLRLGKSQEGLEVLEPVVGILAENPGLLRQVMCWHLSHCMLV 1919
+ EL++L+P+L AD + A+SFGALG VLVK LAY+LLRLG++ E L LEPVV +L+ +PGL+RQ WHL HC +V
Sbjct: 1 LEELSALVPLLLDADDLCARAAASFGALGTVLVKCALAYVLLRLGRTAECLRALEPVVPLLSLHPGLVRQSAVWHLVHCAMV 82 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.815.1 >prot_C-linearis_contig103.815.1 ID=prot_C-linearis_contig103.815.1|Name=mRNA_C-linearis_contig103.815.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=882bp MASAAEQHAAQEKIAQTLARQMEGQLAEPRGMQSPRAASPPQDQHQQQRLback to top mRNA from alignment at C-linearis_contig103:40179..58177+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig103.815.1 ID=mRNA_C-linearis_contig103.815.1|Name=mRNA_C-linearis_contig103.815.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=17999bp|location=Sequence derived from alignment at C-linearis_contig103:40179..58177+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig103:40179..58177+ >mRNA_C-linearis_contig103.815.1 ID=mRNA_C-linearis_contig103.815.1|Name=mRNA_C-linearis_contig103.815.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5292bp|location=Sequence derived from alignment at C-linearis_contig103:40179..58177+ (Chordaria linearis ClinC8C monoicous)back to top |