mRNA_C-linearis_contig103.812.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig103.812.1 vs. uniprot
Match: D8LD80_ECTSI (KH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD80_ECTSI) HSP 1 Score: 331 bits (849), Expect = 1.080e-105 Identity = 178/211 (84.36%), Postives = 179/211 (84.83%), Query Frame = 2 Query: 209 MEVDEGVVFQAGQVES------AAAAAAAGAEDVEMGTDAAGEAEAARPDFPALTAREMGGGKDDFRRIRCPPHRLTPLRNSWENIVNPTVEHMKLQIRFNRKTRNVELKSSKHTEDASALQKTADFIQAFMLGFEVQDAVALLRLDDLYVDSFQVQDVKTLTGDHLSRAIGRIAGQGGKTRHAIENATRTRIIVADQKVHILGSFSNIKV 823
MEVDEGVVFQAGQVE+ ARPDFPALTAREMGGGKDDFRRIRCPPHRLTPLRN WENIV PTVEHMKLQIRFNRKTRNVELKSSKHTEDASALQKTADFIQAFMLGFEVQDAVALLRLDDLYVDSFQVQDVKTLTGDHLSRAIGRIAGQGGKTRHAIENATRTRIIVADQKVHILGSFSNIKV
Sbjct: 1 MEVDEGVVFQAGQVEADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARPDFPALTAREMGGGKDDFRRIRCPPHRLTPLRNCWENIVTPTVEHMKLQIRFNRKTRNVELKSSKHTEDASALQKTADFIQAFMLGFEVQDAVALLRLDDLYVDSFQVQDVKTLTGDHLSRAIGRIAGQGGKTRHAIENATRTRIIVADQKVHILGSFSNIKV 211
BLAST of mRNA_C-linearis_contig103.812.1 vs. uniprot
Match: A0A835ZET5_9STRA (RNA-binding protein PNO1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZET5_9STRA) HSP 1 Score: 268 bits (685), Expect = 1.860e-81 Identity = 145/210 (69.05%), Postives = 172/210 (81.90%), Query Frame = 2 Query: 209 MEVDE---GVVFQAGQVESAAAAAAAGAEDVEMGTDAAGEAEAA-RPDFPALTAREM-GGGKDDFRRIRCPPHRLTPLRNSWENIVNPTVEHMKLQIRFNRKTRNVELKSSKHTEDASALQKTADFIQAFMLGFEVQDAVALLRLDDLYVDSFQVQDVKTLTGDHLSRAIGRIAGQGGKTRHAIENATRTRIIVADQKVHILGSFSNIKV 823
MEVD+ G+ F A V+ AA A AA +D MG G+A A +P+FP L+A+++ G K D RRIRCPPHRLTPLR SWE+IV P VEHMKLQIRFN K RNVELK+S+ TED SALQ++ADF+QAFMLGFEVQDAVALLRL+DLY+DSF+V+DVK L GDHLSRAIGR+AGQ GKTRHAIENATRTR+IVAD ++HILGSF+NI+V
Sbjct: 1 MEVDQQSQGITFHA--VDIAAEAEAADDDDAAMGEG--GQAGGAMKPNFPPLSAQQLRAGAKSDIRRIRCPPHRLTPLRASWEHIVAPVVEHMKLQIRFNPKARNVELKASQFTEDPSALQRSADFVQAFMLGFEVQDAVALLRLEDLYIDSFEVRDVKMLQGDHLSRAIGRVAGQDGKTRHAIENATRTRVIVADHRIHILGSFANIRV 206
BLAST of mRNA_C-linearis_contig103.812.1 vs. uniprot
Match: A0A6T5QRH5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5QRH5_HETAK) HSP 1 Score: 265 bits (677), Expect = 2.140e-80 Identity = 137/207 (66.18%), Postives = 166/207 (80.19%), Query Frame = 2 Query: 209 MEVD--EGVVFQAGQVESAAAAAAAGAEDVEMGTDAAGEAEAARPDFPALTAREMGGGKDDFRRIRCPPHRLTPLRNSWENIVNPTVEHMKLQIRFNRKTRNVELKSSKHTEDASALQKTADFIQAFMLGFEVQDAVALLRLDDLYVDSFQVQDVKTLTGDHLSRAIGRIAGQGGKTRHAIENATRTRIIVADQKVHILGSFSNIKV 823
ME+D EGV VE+ +D M T+ +G RP+FPAL+A+EM GG ++FRRIR P HR TPLR WENI+ P VEHMKLQIRFN KTR+VE+K+S+HTED A+QK ADFIQAFM+GFEVQDAVALLRL+DLYVDSF+V+DVK L+GDHLSRAIGR+AGQ GKTR+AIENATRTRI+VADQ++HILGS++NI+V
Sbjct: 1 MEIDSQEGVTLSPQTVENGVQ------DDSTMETEQSGTI---RPNFPALSAQEMAGGIEEFRRIRVPAHRYTPLREQWENIMQPVVEHMKLQIRFNPKTRSVEMKTSEHTEDVGAIQKAADFIQAFMMGFEVQDAVALLRLEDLYVDSFEVKDVKALSGDHLSRAIGRVAGQDGKTRYAIENATRTRIVVADQRIHILGSYANIRV 198
BLAST of mRNA_C-linearis_contig103.812.1 vs. uniprot
Match: A0A7S2XZF6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZF6_9STRA) HSP 1 Score: 261 bits (666), Expect = 9.170e-79 Identity = 122/164 (74.39%), Postives = 147/164 (89.63%), Query Frame = 2 Query: 332 RPDFPALTAREMGGGKDDFRRIRCPPHRLTPLRNSWENIVNPTVEHMKLQIRFNRKTRNVELKSSKHTEDASALQKTADFIQAFMLGFEVQDAVALLRLDDLYVDSFQVQDVKTLTGDHLSRAIGRIAGQGGKTRHAIENATRTRIIVADQKVHILGSFSNIKV 823
+P+FPA+ A+ GG+ +FRRIR P HR TPLR W+NI++P VEHM+LQIRFN KTR+VELK+S+HTEDA ALQK ADF+QAF +GFEVQDAVALLRLDDLY+DSF+V+DVK L+GDHLSRAIGRIAGQ GKTRHAIENATRTR++VADQ++HILGSF+NI+V
Sbjct: 36 KPNFPAIKAKRTMGGRSEFRRIRVPAHRYTPLREQWQNIMDPVVEHMRLQIRFNPKTRSVELKTSEHTEDAGALQKAADFVQAFCMGFEVQDAVALLRLDDLYIDSFEVKDVKALSGDHLSRAIGRIAGQDGKTRHAIENATRTRVVVADQRIHILGSFANIRV 199
BLAST of mRNA_C-linearis_contig103.812.1 vs. uniprot
Match: W4FJZ4_9STRA (KH domain-containing protein n=5 Tax=Aphanomyces TaxID=100860 RepID=W4FJZ4_9STRA) HSP 1 Score: 256 bits (653), Expect = 7.430e-77 Identity = 132/205 (64.39%), Postives = 160/205 (78.05%), Query Frame = 2 Query: 209 MEVDEGVVFQAGQVESAAAAAAAGAEDVEMGTDAAGEAEAARPDFPALTAREMGGGKDDFRRIRCPPHRLTPLRNSWENIVNPTVEHMKLQIRFNRKTRNVELKSSKHTEDASALQKTADFIQAFMLGFEVQDAVALLRLDDLYVDSFQVQDVKTLTGDHLSRAIGRIAGQGGKTRHAIENATRTRIIVADQKVHILGSFSNIKV 823
M VDE VV A VE+ AA AA D+++ P FPAL+A+ + GGKDDFRR+R P HR TPL+N W NI+ P VEH+KLQ+R N KTR VELK+ HT+DA ALQK ADF+QA+M+GFEVQDAVALLRL+DL+VD+F+V DVK L GDHLSRAIGR+AGQ GKT++AIENATRTR+++ADQKVHILGSFSNIK+
Sbjct: 7 MHVDE-VVLSASDVEAHAAITAADDNDMDV-----------VPSFPALSAQHLDGGKDDFRRVRVPAHRYTPLKNDWPNIMKPLVEHLKLQVRMNMKTRCVELKNGPHTDDAGALQKGADFVQAYMMGFEVQDAVALLRLEDLFVDTFEVTDVKMLKGDHLSRAIGRLAGQDGKTKYAIENATRTRVVLADQKVHILGSFSNIKL 199
BLAST of mRNA_C-linearis_contig103.812.1 vs. uniprot
Match: H3G8F2_PHYRM (KH domain-containing protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=H3G8F2_PHYRM) HSP 1 Score: 252 bits (643), Expect = 1.610e-75 Identity = 116/164 (70.73%), Postives = 144/164 (87.80%), Query Frame = 2 Query: 332 RPDFPALTAREMGGGKDDFRRIRCPPHRLTPLRNSWENIVNPTVEHMKLQIRFNRKTRNVELKSSKHTEDASALQKTADFIQAFMLGFEVQDAVALLRLDDLYVDSFQVQDVKTLTGDHLSRAIGRIAGQGGKTRHAIENATRTRIIVADQKVHILGSFSNIKV 823
RP+FPAL+A++ GGK+DFRR+R P HR TPL+N W NI+ P VEH+KLQIR N KTR +ELK+S HT DA ALQK ADF+QA+M+GFEVQDAVALLRL+DL++D+F+V DVK L GDHLSRAIGR+AGQ GKT++A+ENATRTRI++ADQK+HILGSF+NIK+
Sbjct: 27 RPNFPALSAQQQAGGKNDFRRVRVPAHRYTPLKNDWPNIMKPIVEHLKLQIRMNTKTRCIELKNSPHTTDAGALQKAADFVQAYMMGFEVQDAVALLRLEDLFIDTFEVNDVKMLKGDHLSRAIGRVAGQDGKTKYAVENATRTRIVLADQKIHILGSFANIKL 190
BLAST of mRNA_C-linearis_contig103.812.1 vs. uniprot
Match: G4Z4N5_PHYSP (KH domain-containing protein n=15 Tax=Peronosporaceae TaxID=4777 RepID=G4Z4N5_PHYSP) HSP 1 Score: 252 bits (643), Expect = 2.560e-75 Identity = 116/164 (70.73%), Postives = 144/164 (87.80%), Query Frame = 2 Query: 332 RPDFPALTAREMGGGKDDFRRIRCPPHRLTPLRNSWENIVNPTVEHMKLQIRFNRKTRNVELKSSKHTEDASALQKTADFIQAFMLGFEVQDAVALLRLDDLYVDSFQVQDVKTLTGDHLSRAIGRIAGQGGKTRHAIENATRTRIIVADQKVHILGSFSNIKV 823
RP+FPAL+A++ GGK+DFRR+R P HR TPL+N W NI+ P VEH+KLQIR N KTR +ELK+S HT DA ALQK ADF+QA+M+GFEVQDAVALLRL+DL++D+F+V DVK L GDHLSRAIGR+AGQ GKT++A+ENATRTRI++ADQK+HILGSF+NIK+
Sbjct: 41 RPNFPALSAQQQSGGKNDFRRVRVPAHRYTPLKNDWPNIMKPIVEHLKLQIRMNTKTRCIELKNSPHTTDAGALQKAADFVQAYMMGFEVQDAVALLRLEDLFIDTFEVNDVKMLKGDHLSRAIGRVAGQDGKTKYAVENATRTRIVLADQKIHILGSFANIKL 204
BLAST of mRNA_C-linearis_contig103.812.1 vs. uniprot
Match: A0A6A3YBU7_9STRA (KH domain-containing protein n=6 Tax=Peronosporaceae TaxID=4777 RepID=A0A6A3YBU7_9STRA) HSP 1 Score: 251 bits (642), Expect = 3.470e-75 Identity = 116/164 (70.73%), Postives = 143/164 (87.20%), Query Frame = 2 Query: 332 RPDFPALTAREMGGGKDDFRRIRCPPHRLTPLRNSWENIVNPTVEHMKLQIRFNRKTRNVELKSSKHTEDASALQKTADFIQAFMLGFEVQDAVALLRLDDLYVDSFQVQDVKTLTGDHLSRAIGRIAGQGGKTRHAIENATRTRIIVADQKVHILGSFSNIKV 823
RP FPAL+A++ GGK+DFRR+R P HR TPL+N W NI+ P VEH+KLQIR N KTR +ELK+S HT DA ALQK ADF+QA+M+GFEVQDAVALLRL+DL++D+F+V DVK L GDHLSRAIGR+AGQ GKT++A+ENATRTRI++ADQK+HILGSF+NIK+
Sbjct: 40 RPHFPALSAQQQSGGKNDFRRVRVPAHRYTPLKNDWPNIMKPVVEHLKLQIRMNTKTRCIELKNSPHTTDAGALQKAADFVQAYMMGFEVQDAVALLRLEDLFIDTFEVNDVKMLKGDHLSRAIGRVAGQDGKTKYAVENATRTRIVLADQKIHILGSFANIKL 203
BLAST of mRNA_C-linearis_contig103.812.1 vs. uniprot
Match: A0A3M6VD79_9STRA (KH domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VD79_9STRA) HSP 1 Score: 251 bits (642), Expect = 3.590e-75 Identity = 116/164 (70.73%), Postives = 143/164 (87.20%), Query Frame = 2 Query: 332 RPDFPALTAREMGGGKDDFRRIRCPPHRLTPLRNSWENIVNPTVEHMKLQIRFNRKTRNVELKSSKHTEDASALQKTADFIQAFMLGFEVQDAVALLRLDDLYVDSFQVQDVKTLTGDHLSRAIGRIAGQGGKTRHAIENATRTRIIVADQKVHILGSFSNIKV 823
RP+FPAL+A++ GGK+DFRR+R P HR TPL+N W NI+ P VEH+KLQIR N KTR +ELK+S HT D ALQK ADF+QA+M+GFEVQDAVALLRL+DL++D+F+V DVK L GDHLSRAIGR+AGQ GKT++A+ENATRTRI++ADQK+HILGSFSNIK+
Sbjct: 41 RPNFPALSAQQQSGGKNDFRRVRVPAHRYTPLKNDWPNIMKPIVEHLKLQIRMNTKTRCIELKNSPHTTDVGALQKAADFVQAYMMGFEVQDAVALLRLEDLFIDTFEVNDVKMLKGDHLSRAIGRVAGQDGKTKYAVENATRTRIVLADQKIHILGSFSNIKL 204
BLAST of mRNA_C-linearis_contig103.812.1 vs. uniprot
Match: A0A067D125_SAPPC (KH domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D125_SAPPC) HSP 1 Score: 250 bits (639), Expect = 8.650e-75 Identity = 118/163 (72.39%), Postives = 143/163 (87.73%), Query Frame = 2 Query: 335 PDFPALTAREMGGGKDDFRRIRCPPHRLTPLRNSWENIVNPTVEHMKLQIRFNRKTRNVELKSSKHTEDASALQKTADFIQAFMLGFEVQDAVALLRLDDLYVDSFQVQDVKTLTGDHLSRAIGRIAGQGGKTRHAIENATRTRIIVADQKVHILGSFSNIKV 823
P FPAL+A+E GGGK+DFRR+R P HR TPL+N W NI+ P VEH+KLQIR N KTR +ELK+S TEDA ALQK ADF+QA+M+GFEVQDAVALLRL+DL++D+F+V DVK L GDHLSRA+GR+AGQ GKT++AIENATRTRI++ADQK+HILGSFSNIK+
Sbjct: 38 PSFPALSAQEAGGGKNDFRRVRVPAHRYTPLKNDWPNIMKPIVEHLKLQIRMNTKTRCIELKNSPLTEDAGALQKGADFVQAYMMGFEVQDAVALLRLEDLFIDTFEVTDVKMLKGDHLSRAVGRLAGQDGKTKYAIENATRTRIVLADQKIHILGSFSNIKL 200 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.812.1 >prot_C-linearis_contig103.812.1 ID=prot_C-linearis_contig103.812.1|Name=mRNA_C-linearis_contig103.812.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=243bp MEVDEGVVFQAGQVESAAAAAAAGAEDVEMGTDAAGEAEAARPDFPALTAback to top mRNA from alignment at C-linearis_contig103:25609..30882- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig103.812.1 ID=mRNA_C-linearis_contig103.812.1|Name=mRNA_C-linearis_contig103.812.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5274bp|location=Sequence derived from alignment at C-linearis_contig103:25609..30882- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig103:25609..30882- >mRNA_C-linearis_contig103.812.1 ID=mRNA_C-linearis_contig103.812.1|Name=mRNA_C-linearis_contig103.812.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1458bp|location=Sequence derived from alignment at C-linearis_contig103:25609..30882- (Chordaria linearis ClinC8C monoicous)back to top |