mRNA_C-linearis_contig102.811.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig102.811.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE) HSP 1 Score: 231 bits (590), Expect = 2.340e-69 Identity = 114/120 (95.00%), Postives = 117/120 (97.50%), Query Frame = 1 Query: 1 NGVVDAEGIALCAAVEGRREECIKLLLRRQGCNANTSTRAYANMAHDSTLPMHSNQLFQDTPLVSAFELGGFYSPRIARLLLDAGADVESRVRYEGIEGDCVIHDTPLAIAESILPLWET 360 NGVVDAEGIALCAAVEGRREE +KLLLRRQGCNANTSTRAYANMAHDSTLPM+SNQLFQDTPLVSAFELGGFYSPRI RLLLDAGADV SRVRYEGIEGDCV+HDTPLAIAESILPLWET Sbjct: 204 NGVVDAEGIALCAAVEGRREEFVKLLLRRQGCNANTSTRAYANMAHDSTLPMYSNQLFQDTPLVSAFELGGFYSPRITRLLLDAGADVASRVRYEGIEGDCVMHDTPLAIAESILPLWET 323
BLAST of mRNA_C-linearis_contig102.811.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE) HSP 1 Score: 215 bits (547), Expect = 1.540e-66 Identity = 105/120 (87.50%), Postives = 109/120 (90.83%), Query Frame = 1 Query: 1 NGVVDAEGIALCAAVEGRREECIKLLLRRQGCNANTSTRAYANMAHDSTLPMHSNQLFQDTPLVSAFELGGFYSPRIARLLLDAGADVESRVRYEGIEGDCVIHDTPLAIAESILPLWET 360 NGVVDAEGIALCAAVEGRREECI+LLLR QGCNAN RAYANM HD+TLPM+SNQLF DTPLVSAFELGGFYSPRI RLLL AGADV SRVRYEGIEGDCV+HDTPL IAES LPLWET Sbjct: 200 NGVVDAEGIALCAAVEGRREECIELLLRTQGCNANAIARAYANMTHDTTLPMYSNQLFPDTPLVSAFELGGFYSPRITRLLLGAGADVASRVRYEGIEGDCVMHDTPLTIAESTLPLWET 319
BLAST of mRNA_C-linearis_contig102.811.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE) HSP 1 Score: 224 bits (571), Expect = 1.780e-66 Identity = 113/124 (91.13%), Postives = 115/124 (92.74%), Query Frame = 1 Query: 1 NGVVDAEGIALCAAVEGRREECIKLLLRRQGCNANTSTRAYANMAHDSTLPMHSNQLFQDTPLVSAFELGGFYSPRIARLLLDAGADVESRVRYEGIEGDCVIHDTPLAIAESILPLWETEWDA 372 NG VDAEGIALCAAVEGRREECIKLLL ANTSTRAYANMAHDSTLPM+SNQLFQDTPLVSAFELGGFYSPRI RLLLDAGADV SRVRYEGIEGDCV+HDTPLAIAESILPLWETEWDA Sbjct: 206 NGAVDAEGIALCAAVEGRREECIKLLL------ANTSTRAYANMAHDSTLPMYSNQLFQDTPLVSAFELGGFYSPRITRLLLDAGADVASRVRYEGIEGDCVMHDTPLAIAESILPLWETEWDA 323
BLAST of mRNA_C-linearis_contig102.811.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE) HSP 1 Score: 122 bits (305), Expect = 2.640e-30 Identity = 67/117 (57.26%), Postives = 81/117 (69.23%), Query Frame = 1 Query: 4 GVVDAEGIALCAAVEGRREECIKLLLRRQGCNANTSTRAYANMAHDSTLPMHSNQLFQDTPLVSAFELGGFYSPRIARLLLDAGADVESRVRY-----EGIEGDCVIHDTPLAIAES 339 GVVD EG+ALCAA+EG E C+ LLLRRQG N N STRAY NMAH + + + +FQ+TPLVS F LG F++PR ARLLL+AGAD S VR+ EG E + I TPL +A S Sbjct: 216 GVVDTEGVALCAAIEGCSEACVYLLLRRQGGNINVSTRAYVNMAHGTLPETYDDFVFQETPLVSTFNLGSFHAPRFARLLLEAGADATSGVRFPCDSDEGEEDEDFI-GTPLELATS 331
BLAST of mRNA_C-linearis_contig102.811.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 8.280e-21 Identity = 66/164 (40.24%), Postives = 79/164 (48.17%), Query Frame = 1 Query: 4 GVVDAEGIALCAAV-----------------------------------------------EGRREECIKLLLRRQGCNANTSTRAYANMAHDSTLPMHSNQLFQDTPLVSAFELGGFYSPRIARLLLDAGADVESRVRY-----EGIEGDCVIHDTPLAIAES 339 GVVD EG+ALCAA+ EG E C+ LLLRRQG NANT TRAY NM H + + +FQ+TPLVS F LG F++P ARLLL+AGAD S VR+ EG E + I TPL +A S Sbjct: 223 GVVDTEGVALCAAIXWRCTMDIWKWSASLCIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEGCSEACVYLLLRRQGGNANTGTRAYVNMDHGTLPETYDEFVFQETPLVSTFNLGSFHAPGFARLLLEAGADATSGVRFPCDSDEGEEDEGFI-GTPLDLATS 385
BLAST of mRNA_C-linearis_contig102.811.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 2.150e-15 Identity = 47/114 (41.23%), Postives = 68/114 (59.65%), Query Frame = 1 Query: 4 GVVDAEGIALCAAVEGRREECIKLLLRRQGCNANTSTRAYANMAHDSTLPMHSNQLFQDTPLVSAFELGGFYSPRIARLLLDAGADVESRVRYEGIEGDCVIHDTPLAIAESIL 345 GV+D +G ALC A+EGR E C+KLL+ R+G + + R Y N+ + ++ PL+ AF G ++PRI R LLD GAD +++VR+ GIEG + D PL A+ L Sbjct: 248 GVIDTDGTALCDAIEGRNEACLKLLVSRRGGSEHMVERNYTNIDNA-----------RENPLLCAFGTGRGHAPRITRFLLDHGADTKNKVRF-GIEGLGEMIDEPLVAAKITL 349
BLAST of mRNA_C-linearis_contig102.811.1 vs. uniprot
Match: D8LP44_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP44_ECTSI) HSP 1 Score: 79.3 bits (194), Expect = 7.460e-15 Identity = 52/122 (42.62%), Postives = 69/122 (56.56%), Query Frame = 1 Query: 4 GVVDAEGIALCAAVEGRREECIKLLLRRQGCNANTSTRAYANMAHDSTLPMHSNQLFQDTPLVSAFELGGFYSPRIARLLLDAGADVESRVRYEGIEGDCVIHDTPLAIAESILPLWETEWD 369 GV D +G ALC A+EGR E C+KLL+ R+G NA+ + Y N DS D LV AF G Y+PR+ R LLD GAD + +VR+E I+G I PL A+ IL +T ++ Sbjct: 235 GVKDTDGTALCDAIEGRSEACLKLLVGRRGGNAHMAESHYTNT--DSAC---------DNALVCAFGAGRGYAPRMTRFLLDHGADTKKKVRFE-IKGLGEIAGGPLVAAKIILRHEQTHFE 344
BLAST of mRNA_C-linearis_contig102.811.1 vs. uniprot
Match: D7G1U9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U9_ECTSI) HSP 1 Score: 53.1 bits (126), Expect = 1.250e-5 Identity = 44/110 (40.00%), Postives = 48/110 (43.64%), Query Frame = 1 Query: 4 GVVDAEGIALCAAVEGRREECIKLLLRRQGCNANTSTRAYANMAHDSTLPMHSNQLFQDTPLVSAFELGGFYSPRIARLLLDAGADVESRVRYEGIEGDCVIHDTPLAIA 333 GVVD G AL A E REE +K LL+ Q Y N D F TPLV E G SPRIAR L+D GAD +S V DTPL A Sbjct: 237 GVVDT-GRALVVAAEYSREESVKFLLQHQAGGGTW----YVNNTLDP---------FGRTPLVCTIEACGSSSPRIARFLIDDGADTKSTVLVTRSGEWTTSRDTPLGFA 332 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.811.1 >prot_C-linearis_contig102.811.1 ID=prot_C-linearis_contig102.811.1|Name=mRNA_C-linearis_contig102.811.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=124bp NGVVDAEGIALCAAVEGRREECIKLLLRRQGCNANTSTRAYANMAHDSTLback to top mRNA from alignment at C-linearis_contig102:599664..600037+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig102.811.1 ID=mRNA_C-linearis_contig102.811.1|Name=mRNA_C-linearis_contig102.811.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=374bp|location=Sequence derived from alignment at C-linearis_contig102:599664..600037+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig102:599664..600037+ >mRNA_C-linearis_contig102.811.1 ID=mRNA_C-linearis_contig102.811.1|Name=mRNA_C-linearis_contig102.811.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at C-linearis_contig102:599664..600037+ (Chordaria linearis ClinC8C monoicous)back to top |