mRNA_C-linearis_contig102.809.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig102.809.1 vs. uniprot
Match: D7FYM7_ECTSI (Proteasome subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM7_ECTSI) HSP 1 Score: 487 bits (1254), Expect = 3.080e-164 Identity = 240/252 (95.24%), Postives = 247/252 (98.02%), Query Frame = 3 Query: 96 MSQGPAPHSAAPIWHSEGTKNVEVLSSGIDHGVTQNPFERRWSPYDFNGGTTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRQDEKPTRSAPDTVELVKELFVTAGERDIYTGDAVEITVISKDGTSTQMFPLKKD 851 MSQ P+PHSA PIWHSEGTK+++VLSSGIDHGVTQNPFERRWSPYDFNGGTTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTR+DEKP RSA +TVELVKEL VTAGERDIYTGDAVEIT+ISKDGTSTQMFPLKKD Sbjct: 1 MSQRPSPHSA-PIWHSEGTKDLQVLSSGIDHGVTQNPFERRWSPYDFNGGTTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRKDEKPARSAAETVELVKELLVTAGERDIYTGDAVEITIISKDGTSTQMFPLKKD 251
BLAST of mRNA_C-linearis_contig102.809.1 vs. uniprot
Match: A0A835ZC48_9STRA (Proteasome subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC48_9STRA) HSP 1 Score: 383 bits (984), Expect = 8.360e-124 Identity = 185/243 (76.13%), Postives = 210/243 (86.42%), Query Frame = 3 Query: 123 AAPIWHSEGTKNVEVLSSGIDHGVTQNPFERRWSPYDFNGGTTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRQDEKPTRSAPDTVELVKELFVTAGERDIYTGDAVEITVISKDGTSTQMFPLKKD 851 A +W +EG +V S IDHGVTQNPFERRWSPYDFNGGTTLA+AG DYVV+ ADTRMSTGY IMSRDQTKLHQLTSKCVIASAGC++DVTTLWK LD M MY HN+ K+M+TPA AQMLANTLYYRRFFPYYSFNVL GLD +GKG+VFSYDAIGS+ERV YSASGSGQ+YIIP++DNLV FKTR D KP R+A +TV+LVK++F+TAGERDIYTGDAVEI +I+ GT TQ+F LKKD Sbjct: 15 ALAMWSTEGQSDVRP--SDIDHGVTQNPFERRWSPYDFNGGTTLAVAGEDYVVIGADTRMSTGYQIMSRDQTKLHQLTSKCVIASAGCRSDVTTLWKMLDHRMVMYKHNIGKDMSTPAAAQMLANTLYYRRFFPYYSFNVLAGLDAEGKGAVFSYDAIGSYERVEYSASGSGQSYIIPVMDNLVGFKTRLDPKPVRTAEETVDLVKDVFITAGERDIYTGDAVEICIITATGTQTQIFNLKKD 255
BLAST of mRNA_C-linearis_contig102.809.1 vs. uniprot
Match: A0A7S2DDA1_9STRA (Proteasome subunit beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DDA1_9STRA) HSP 1 Score: 352 bits (902), Expect = 4.990e-111 Identity = 168/243 (69.14%), Postives = 201/243 (82.72%), Query Frame = 3 Query: 129 PIWHSEGTKNVEV--LSSGIDHGVTQNPFERRWSPYDFNGGTTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRQDEKPTRSAPDTVELVKELFVTAGERDIYTGDAVEITVISKDGTSTQMFPLKKD 851 PIWHSEG +V + + IDHGVTQNP+ERR+SPYDFNGGTTLA+AG D+VVVA DTRMS+GY I+SR +KLH LTSKC++A+AGCKTDV TL L++ M MYDH+ KEM+T A AQML+NTLYYRRFFPYYSFNVL GLDE+G+G+VFSYDAIGS+ER P+SASGSGQ+Y+IPL+DNLV FKTR D P ++ + V +VK+ FVTAGERDIYTGD +EI+VI KDG T FPLKKD Sbjct: 54 PIWHSEGQASVPLGPTADTIDHGVTQNPYERRFSPYDFNGGTTLAVAGKDFVVVAGDTRMSSGYEILSRKVSKLHPLTSKCILAAAGCKTDVDTLTNMLNIKMQMYDHDCGKEMSTTAAAQMLSNTLYYRRFFPYYSFNVLAGLDEEGRGAVFSYDAIGSYERTPFSASGSGQSYLIPLMDNLVTFKTRTDVMPDFTSEEAVNIVKDAFVTAGERDIYTGDTLEISVIKKDGIETITFPLKKD 296
BLAST of mRNA_C-linearis_contig102.809.1 vs. uniprot
Match: A0A7S2SKB7_9STRA (Proteasome subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKB7_9STRA) HSP 1 Score: 340 bits (872), Expect = 3.360e-107 Identity = 163/247 (65.99%), Postives = 196/247 (79.35%), Query Frame = 3 Query: 111 APHSAAPIWHSEGTKNVEVLSSGIDHGVTQNPFERRWSPYDFNGGTTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRQDEKPTRSAPDTVELVKELFVTAGERDIYTGDAVEITVISKDGTSTQMFPLKKD 851 AP +W SEG + S DHGVTQNP+ERR+SPYDFNGGTTLAIAG D+VVVAADTR+S+GY I+SR+ +KLH LT +CV+A+AGCKTDV TL L M MY+H+M K M TPAVAQML+NTLYYRRFFPYYSFNVL G+D GKG+VFSYDAIGS+ERVPYS+SGSGQ Y++PL+DNLV FK RQD P + + V +VK+ F+TAGERDIYTGDAVEI VI+ G ++++ PLKKD Sbjct: 10 APPPTPIMWSSEGAVALPAEPSAFDHGVTQNPYERRFSPYDFNGGTTLAIAGKDFVVVAADTRLSSGYEILSRNVSKLHPLTGRCVLAAAGCKTDVDTLRNTLHARMQMYEHDMGKAMDTPAVAQMLSNTLYYRRFFPYYSFNVLAGIDSDGKGAVFSYDAIGSYERVPYSSSGSGQNYMVPLMDNLVCFKNRQDTPPELTMEEVVRIVKDAFITAGERDIYTGDAVEIKVITASGVASEIMPLKKD 256
BLAST of mRNA_C-linearis_contig102.809.1 vs. uniprot
Match: A0A7S2FLM8_9STRA (Proteasome subunit beta n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FLM8_9STRA) HSP 1 Score: 338 bits (866), Expect = 3.410e-106 Identity = 167/242 (69.01%), Postives = 195/242 (80.58%), Query Frame = 3 Query: 129 PIWHSEGTKNVEV-LSSGIDHGVTQNPFERRWSPYDFNGGTTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRQDEKPTRSAPDTVELVKELFVTAGERDIYTGDAVEITVISKDGTSTQMFPLKKD 851 PIW SEG E IDHGVT+NP+ERR+SPYDFNGGTTLA++G D+VVVA DTRMS+GY I SR+ KLHQLTSK V+A+AGCKTDV TL L M MY+H+ KEM+T AVAQML+NTLY RRFFPYYSFNVL GLDE+GKG+VFSYDAIGS+ER P+SASGSGQ+Y+IPL+DNLV FKTR D P + + V +VK+ FVTAGERDIYTGDAVEI VIS G +T++FPLKKD Sbjct: 23 PIWSSEGPSAGEFGKRDHIDHGVTENPYERRFSPYDFNGGTTLAVSGKDFVVVAGDTRMSSGYEIKSRNVPKLHQLTSKTVLAAAGCKTDVDTLTNLLRTRMQMYEHDCNKEMSTTAVAQMLSNTLYGRRFFPYYSFNVLAGLDEEGKGAVFSYDAIGSYERTPFSASGSGQSYLIPLMDNLVTFKTRLDPVPDMTVEEIVSIVKDAFVTAGERDIYTGDAVEIKVISATGVTTELFPLKKD 264
BLAST of mRNA_C-linearis_contig102.809.1 vs. uniprot
Match: A0A7S2XWL8_9STRA (Proteasome subunit beta n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWL8_9STRA) HSP 1 Score: 332 bits (851), Expect = 4.050e-104 Identity = 159/254 (62.60%), Postives = 198/254 (77.95%), Query Frame = 3 Query: 108 PAPHSAAPIWHSEGTKN------VEVLSSGIDHGVTQNPFERRWSPYDFNGGTTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRQDEKPTRSAPDTVELVKELFVTAGERDIYTGDAVEITVISKDGTSTQMFPLKKD 851 P + PIWHSE + + + V S H V+ P + RW PY+FNGGTTLAIAG+++VVVAADTRMS GY+I+SR+++KLH+LT KC++A+AGC+TDVTTL LD+ M MY HN+ EM T AVAQMLANTLYYRRFFPYYSFNVLCG+D++GKG V+SYDAIGSFE VPYSASGSGQ+YIIPL+D+ V FK R KP + +TV++VK FVTAGERDIYTGD VEI V++ +G +++FPLKKD Sbjct: 2 PTVQNGVPIWHSESSNSTVKPYQLPVNGSSQKHEVSGGPVQHRWGPYEFNGGTTLAIAGSNFVVVAADTRMSQGYNILSRNESKLHKLTEKCILAAAGCQTDVTTLRNVLDIRMQMYQHNVGHEMPTTAVAQMLANTLYYRRFFPYYSFNVLCGIDKEGKGVVYSYDAIGSFESVPYSASGSGQSYIIPLMDSTVAFKNRTQPKPNYTIEETVDIVKSAFVTAGERDIYTGDEVEIKVLTAEGCRSEIFPLKKD 255
BLAST of mRNA_C-linearis_contig102.809.1 vs. uniprot
Match: K0S6G4_THAOC (Proteasome subunit beta n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S6G4_THAOC) HSP 1 Score: 325 bits (834), Expect = 3.360e-101 Identity = 163/266 (61.28%), Postives = 202/266 (75.94%), Query Frame = 3 Query: 54 EGRPIFSALQEGSTMSQGPAPHSAAPIWHSEGTKNVEVLSSGIDHGVTQNPFERRWSPYDFNGGTTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRQDEKPTRSAPDTVELVKELFVTAGERDIYTGDAVEITVISKDGTSTQMFPLKKD 851 EG S +GS +S +PH A P G+ ++ SGIDHGVTQ P+ERR+SPY+FNGGTTLAI+G DY VVAADTR+S+GY I+SR+ +KLH LT +CV+ SAGCKTDV L LD+ M +Y HN K MATP+VAQML NTLYY+RFFPYYSFNVL G+D +GKG+V+SYDAIGSFER P+SASGSGQ+++IPL+DN++ K R DE+ A + VE+VK+ F+TAGERDIYTGDAV+I VI+KDG Q F LK D Sbjct: 26 EGGASISVHFDGSNLSVAQSPH-ADP-----GSSAID--GSGIDHGVTQAPYERRFSPYEFNGGTTLAISGPDYAVVAADTRLSSGYEILSRNVSKLHPLTGRCVLGSAGCKTDVDQLRSVLDIKMKVYAHNHRKPMATPSVAQMLGNTLYYKRFFPYYSFNVLAGIDSEGKGAVYSYDAIGSFERTPFSASGSGQSFLIPLMDNVISHKNRLDERRDLPAEEVVEIVKDAFLTAGERDIYTGDAVDIMVITKDGIDKQTFQLKAD 283
BLAST of mRNA_C-linearis_contig102.809.1 vs. uniprot
Match: A0A7S3PW57_9STRA (Proteasome subunit beta n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PW57_9STRA) HSP 1 Score: 316 bits (810), Expect = 7.990e-98 Identity = 154/255 (60.39%), Postives = 191/255 (74.90%), Query Frame = 3 Query: 123 AAPIWHSEGTKNVEVLSSG------------IDHGVTQNPFERRWSPYDFNGGTTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRQDEKPTRSAPDTVELVKELFVTAGERDIYTGDAVEITVISKDGTSTQMFPLKKD 851 A P+ SEG + V + IDHGVTQ P+ER +SPYDFNGGTTLAI+G DY +VAADTR+STGY I+SR+ TKLH+LTSKCV+ SAGCKTD+ L LD++ +Y HN KEM+TP+VAQML NTLYY+RFFPYYSFNVL G+D++GKG+V+SYDAIGSFER P +A+GSGQ+++IPLLDN+++ R DEK A + VE+VK+ FVTAGERDIYTGD +EI VI G + FPLK D Sbjct: 19 ALPVHSSEGGATIPVSFTQNNPNADGEDYNHIDHGVTQAPYERSFSPYDFNGGTTLAISGPDYAIVAADTRLSTGYQILSRNVTKLHELTSKCVLGSAGCKTDIDQLRSVLDINQKVYHHNHRKEMSTPSVAQMLGNTLYYKRFFPYYSFNVLAGVDKEGKGAVYSYDAIGSFERTPVTATGSGQSFLIPLLDNVIKHNNRNDEKRDLPAEEVVEIVKDAFVTAGERDIYTGDMLEIKVIRASGITNISFPLKAD 273
BLAST of mRNA_C-linearis_contig102.809.1 vs. uniprot
Match: A0A7S2N0R8_9STRA (Proteasome subunit beta n=2 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S2N0R8_9STRA) HSP 1 Score: 316 bits (809), Expect = 1.050e-97 Identity = 156/253 (61.66%), Postives = 192/253 (75.89%), Query Frame = 3 Query: 123 AAPIWHSEGTKNVEVLSS----------GIDHGVTQNPFERRWSPYDFNGGTTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRQDEKPTRSAPDTVELVKELFVTAGERDIYTGDAVEITVISKDGTSTQMFPLKKD 851 A PI SEG + V S IDHGVT+ +ER +SPY+FNGGTTLAI+G DY VVAADTR+S+GY I+SRD TKLH LT KCV+ SAGCKTDV L LD+ M +Y HN K M+TP+VAQML+NTLYY+RFFPYY+FNVL G+D +GKG+V+SYDAIGSFER P+SASGSGQ+++IPL+DN++ K R DEK + + VE+VK+ FVTAGERDIYTGDAVEI VI+K+G ++F LK D Sbjct: 19 ALPIHSSEGDVTIPVSFSHGNNPNPHADDIDHGVTRATYERGFSPYEFNGGTTLAISGPDYAVVAADTRLSSGYEILSRDVTKLHALTEKCVLGSAGCKTDVDQLRSVLDIKMKIYAHNHRKPMSTPSVAQMLSNTLYYKRFFPYYAFNVLAGVDAEGKGAVYSYDAIGSFERTPFSASGSGQSFLIPLMDNVIAHKNRCDEKRDLPSEEVVEIVKDAFVTAGERDIYTGDAVEIMVITKEGIKKEIFKLKAD 271
BLAST of mRNA_C-linearis_contig102.809.1 vs. uniprot
Match: B8BSP9_THAPS (Proteasome subunit beta n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BSP9_THAPS) HSP 1 Score: 314 bits (805), Expect = 5.480e-97 Identity = 147/231 (63.64%), Postives = 185/231 (80.09%), Query Frame = 3 Query: 159 VEVLSSGIDHGVTQNPFERRWSPYDFNGGTTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRQDEKPTRSAPDTVELVKELFVTAGERDIYTGDAVEITVISKDGTSTQMFPLKKD 851 +++ S IDHG+TQ+P+ERR+SPY+FNGGTTLAI+G DY VVAADTR+S+GY I+SR+ +KLH LT KCV+ SAGCKTDV L LD+ M +Y HN K MATP+VAQML NTLY +RFFPYYSFNVL G+D +GKG+V+SYDAIGSFER P+SASGSGQ ++IPL+DN++ K R D+K + + VE+VK+ F+TAGERDIYTGDAVEI VI+ G ++ F LK D Sbjct: 50 LDIDGSNIDHGITQSPWERRFSPYEFNGGTTLAISGPDYAVVAADTRLSSGYEILSRNVSKLHPLTEKCVLGSAGCKTDVDQLRSVLDIKMKVYAHNHRKAMATPSVAQMLGNTLYMKRFFPYYSFNVLAGIDSEGKGAVYSYDAIGSFERTPFSASGSGQAFLIPLMDNVISHKNRLDQKRELGSEEVVEIVKDAFLTAGERDIYTGDAVEIMVITAKGIESETFKLKAD 280 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.809.1 >prot_C-linearis_contig102.809.1 ID=prot_C-linearis_contig102.809.1|Name=mRNA_C-linearis_contig102.809.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=253bp MSQGPAPHSAAPIWHSEGTKNVEVLSSGIDHGVTQNPFERRWSPYDFNGGback to top mRNA from alignment at C-linearis_contig102:560604..565650+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig102.809.1 ID=mRNA_C-linearis_contig102.809.1|Name=mRNA_C-linearis_contig102.809.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5047bp|location=Sequence derived from alignment at C-linearis_contig102:560604..565650+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig102:560604..565650+ >mRNA_C-linearis_contig102.809.1 ID=mRNA_C-linearis_contig102.809.1|Name=mRNA_C-linearis_contig102.809.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1518bp|location=Sequence derived from alignment at C-linearis_contig102:560604..565650+ (Chordaria linearis ClinC8C monoicous)back to top |