Homology
BLAST of mRNA_C-linearis_contig102.800.1 vs. uniprot
Match:
D7FYL6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYL6_ECTSI)
HSP 1 Score: 141 bits (355), Expect = 2.340e-35
Identity = 86/164 (52.44%), Postives = 107/164 (65.24%), Query Frame = 2
Query: 56 GVSLAQAQRVQALLQLGVTEQDVQIAERLMSTTPPGDPDNSPKIEWLLGYSVEQMSRLKALEVLGISSAMLEEEKARILGSLGVKAWGHPGSSAVIENPQDNVGSCVP--RKRRNTASEAPRVPAPTCGMASPSPS---EVAELEDECLSQHLRIQQLELQVAA 532
G + Q RVQALL+LGVTE+DV++A L+ P + K EWLL S+EQMSRLKALE LG+S MLEE++ RILG LG+ WG+PG S V + +C P RKR++ A R G+A P+ EVA+LEDECLSQHLRIQQLEL+VAA
Sbjct: 6 GATPQQVLRVQALLKLGVTEEDVRLAAELLR---PRTNNEGTKAEWLLSLSMEQMSRLKALEELGVSQDMLEEDRGRILGDLGIPRWGNPGDSMVDAERDSSTSACGPVFRKRQHIEGTAKR-----WGLAQPTRQKEVEVAKLEDECLSQHLRIQQLELEVAA 161
BLAST of mRNA_C-linearis_contig102.800.1 vs. uniprot
Match:
A0A6H5K919_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K919_9PHAE)
HSP 1 Score: 120 bits (300), Expect = 2.270e-28
Identity = 68/120 (56.67%), Postives = 83/120 (69.17%), Query Frame = 2
Query: 182 KIEWLLGYSVEQMSRLKALEVLGISSAMLEEEKARILGSLGVKAWGHPGSSAVIENPQDNVGSCVP--RKRRNTASEAPRVPAPTCGMASPSPS---EVAELEDECLSQHLRIQQLELQV 526
K EWLL SVEQMSRLKALE LG+S AMLEE++ RILG+LG+ WG+PG S V + +C P RKR++ + A R G+A P+ EVA+LEDECLSQHLRIQQLEL+V
Sbjct: 2 KAEWLLSLSVEQMSRLKALEQLGVSQAMLEEDRGRILGNLGIPRWGNPGDSMVDTEQDSSTSTCGPIFRKRQHIEATAKR-----WGLAQPTRQMEVEVAKLEDECLSQHLRIQQLELEV 116
BLAST of mRNA_C-linearis_contig102.800.1 vs. uniprot
Match:
D7FYM0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM0_ECTSI)
HSP 1 Score: 107 bits (268), Expect = 1.380e-22
Identity = 73/166 (43.98%), Postives = 97/166 (58.43%), Query Frame = 2
Query: 56 GVSLAQAQRVQALLQLGVTEQDVQIAERLMSTTPPGDPDNSPKIEWLLGYSVEQMSRLKALEVLGISSAMLEEEKARILGSLGVKAWGHPGSSAVI-ENPQDNVGSCVPRKRRNTASEAPRVPAPTCGMASPSPSEVAELEDECLSQHLRIQQLELQVAALSLSES 550
GV+ QA R QALL+LGVT++DV+IAERLM + G + K EWLLG + QMS KAL+VLGIS A++EEE++R LG LG G S + +D G +KRR++ E A+ S V +LE+ C +Q RIQ+LE Q+A LS S
Sbjct: 84 GVTQKQALRTQALLRLGVTDEDVRIAERLMGSRSEGADNTPSKEEWLLGVTYAQMSFHKALQVLGISEAVVEEERSRRLGELGSGGRGGGASECGAGQEAEDTCGRFFIKKRRSSIEELGTTLPGEVAFAN---SRVLQLEEVCHTQMTRIQELESQLAVLSARSS 246
BLAST of mRNA_C-linearis_contig102.800.1 vs. uniprot
Match:
A0A836CJU9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJU9_9STRA)
HSP 1 Score: 83.2 bits (204), Expect = 1.410e-13
Identity = 57/148 (38.51%), Postives = 79/148 (53.38%), Query Frame = 2
Query: 32 ETALHTLSGVSLAQAQRVQALLQLGVTEQDVQIAERLMSTTPPGD---------------PDNSPKIEWLLGYSVEQMSRLKALEVLGISSAMLEEEKARILGSLGVKAWGHPGSSAVIENPQDNVGSCVPRKRRNTASEAPRVPAPT 430
ET + GVS+ Q +R QALL+LGVTE D+++AERL + P G+ P K E LLG + ++S KALEVLG+ A++EEE+AR LG LG + + + D+ V R+R S APR P P+
Sbjct: 84 ETIMQKQFGVSMEQMKRTQALLRLGVTEDDLKVAERLFAELPGGEELRKARAEGVISPAIPRKLSKEERLLGLTKSEISFCKALEVLGVDMAIVEEERARRLGQLGQQRSSDAIGDVISD---DDSSESVLRRRALLPSPAPRAPTPS 228
BLAST of mRNA_C-linearis_contig102.800.1 vs. uniprot
Match:
D8LT43_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT43_ECTSI)
HSP 1 Score: 67.0 bits (162), Expect = 1.770e-9
Identity = 38/90 (42.22%), Postives = 60/90 (66.67%), Query Frame = 2
Query: 56 GVSLAQAQRVQALLQLGVTEQDVQIAERLMSTTPPGDPDNSP-KIEWLLGYSVEQMSRLKALEVLGISSAMLEEEKARILGSLGVKAWGH 322
G++L Q +RV+ALL++GV E+D++IA+RL+ D P K E LLGY+ +Q R+KAL +LG++ + +A +L SLG A+G+
Sbjct: 6 GMNLMQMKRVKALLRMGVCEEDLEIADRLLKMGLNWSNDTPPTKEEQLLGYNSQQRQRMKALHILGLTEESFDRCRAVMLSSLGPSAFGY 95
BLAST of mRNA_C-linearis_contig102.800.1 vs. uniprot
Match:
A0A6H5KHW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHW8_9PHAE)
HSP 1 Score: 66.6 bits (161), Expect = 5.060e-8
Identity = 38/90 (42.22%), Postives = 60/90 (66.67%), Query Frame = 2
Query: 56 GVSLAQAQRVQALLQLGVTEQDVQIAERLMSTTPPGDPDNSP-KIEWLLGYSVEQMSRLKALEVLGISSAMLEEEKARILGSLGVKAWGH 322
G++L Q +RV+ALL++GV E+D++IA+RL+ D P K E LLGY+ +Q R+KAL +LG++ + +A +L SLG A+G+
Sbjct: 227 GMNLMQMKRVKALLRMGVCEEDLEIADRLLKMGLNWSNDTPPTKEEQLLGYTSQQRQRVKALHILGLTEESFDRCRAVMLSSLGPSAFGY 316
BLAST of mRNA_C-linearis_contig102.800.1 vs. uniprot
Match:
B8BQR6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQR6_THAPS)
HSP 1 Score: 58.2 bits (139), Expect = 5.000e-6
Identity = 45/153 (29.41%), Postives = 77/153 (50.33%), Query Frame = 2
Query: 80 RVQALLQLGVTEQDVQIAERLMSTTPPGDPDNSPKIEWLLGYSVEQMSRLKALEVLGISSAMLEEEKARILGSLGVKAWGHPGSSAVIENPQDNVGSCVPRKRRNTASEAPRVPAPTCGM-ASPSPSEVAELEDECLSQHLRIQQLELQVAAL 535
R + L +LGV+E+DVQ+A RLM P D + K E +LG++ +++R KAL +LG S +E E A+ +G+LG+ S N Q ++ + R S + P+ T S +E+ L ++ + + I+ L ++ L
Sbjct: 19 RSKGLEKLGVSEEDVQLAARLMQQIPTCTSDPN-KAERILGFASSRLAREKALRLLGASEEEVEVENAKTMGALGIAGRRRSYSVMHSANQQHSLLLSKKSQLRKRTSSIVKSPSRTSAKHRRRSSAEIRMLRNQARTSAIEIESLRARIEEL 170
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.800.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 7
0 1 Expect = 2.34e-35 / Id = 52.44 Expect = 2.27e-28 / Id = 56.67 Expect = 1.38e-22 / Id = 43.98 Expect = 1.41e-13 / Id = 38.51 Expect = 1.77e-9 / Id = 42.22 Expect = 5.06e-8 / Id = 42.22 Expect = 5.00e-6 / Id = 29.41 Sequence D7FYL6_ECTSI A0A6H5K919_9PHAE D7FYM0_ECTSI A0A836CJU9_9STRA D8LT43_ECTSI A0A6H5KHW8_9PHAE B8BQR6_THAPS back to top
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.800.1
>prot_C-linearis_contig102.800.1 ID=prot_C-linearis_contig102.800.1|Name=mRNA_C-linearis_contig102.800.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=187bp
MNLPETALHTLSGVSLAQAQRVQALLQLGVTEQDVQIAERLMSTTPPGDP back to top mRNA from alignment at C-linearis_contig102:502210..506814+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig102.800.1 ID=mRNA_C-linearis_contig102.800.1|Name=mRNA_C-linearis_contig102.800.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4605bp|location=Sequence derived from alignment at C-linearis_contig102:502210..506814+ (Chordaria linearis ClinC8C monoicous)CAACCCCGCTCAACAACTC ATGAACTTGCCAGAAACAGCCTTGCACACGC
TCAGCGGGGTCAGCCTTGCACAGGCTCAGCGTGTTCAAGCGCTGCTTCAA
TTAGGCGTCACTGAGCAGGACGTTCAGATCGCGGAGAGGTTGATGTCAAC
CACGCCGCCAGGTGACCCTGACAAC GTGAGTGCCCACGTCCCCAATCATG
TATTTATCAACAACGCCAAGTAGGATGATACCATCGTGCAATCGTATGTA
GTCTTGGGTGTCCGGCAAGCAAGTTTGAGGCATCGTCTCTGTACGGAACT
CTGGACCTAGTTCCTGAGCTTCAAATCCAAGCCAGAAGCGGTGGAGACAC
CCCGCTTCTGCGCCTGTTCATCCCACGTTCATTCCACGACCGACCTAAAA
AAGCTGGAATTTTCAGTGCACACCGAGACGACCTGTACATACTTGTCCAG
GTCCCTCGACAGCGCATGGTAGGATACGATCACGGTGTATGTATATATCC
TGCTGTGCAAGTGTGTTTCGTCGATGCACAGTAGATCTAGGTGCATTGTG
TGTCGAGAAACCTGCCTGCTGCAAGAAGAGTCGATATTTTTATTTCACAG
CTTGCAAAGACTGCATTTATTTCCAGATTTCCAGCGGTTCTGAGATCTCG
AACAGGTTTGATGGGCACCGGCCCCAATCTGTGCATATTTTGTCCGAAAA
GACATGACCAGCAGCAATCCCCGCCGTTCTATGTACTCTAGGCTCAAAGT
TTTCATTTTCGCATGTAATGCAGCTTTTCGGCGCTTGGTGCAACGTGCAT
GTAATGCAGCTTCTTTCAAAAAAATAAATAATATATTATGTGCGACGATA
ACACAACAACAACAGCAGTTTGACTATATTTTTGTAGATGCACCCCTCTG
CCCCCCTTTTTTGCTGCACCATTACACTACCCCCCCGGGGAATGATGTCG
TGTTTAGATTACATCTTTCCGGGTGTGACTGTCCCTCTTTGTGGTGGATG
TTTTTTTTTGTCGACATGTCTCCTTGCCTGCTTCCCTTGCAACATATACC
AGGTATATAATATATATATATTCGAAAGTATGCACCTTCTTCTTAGTCGG
TGGAGAGGGATCCGACTAGAGTATTTGCCTTGCCGGGGGAACTGGGACGG
AACACCCCGGCTTCGTAGGGTTAGCAAGATAGAATCGGGAGGTATACCCC
TGGTTGGTGATGTTGGCGCTCCACTCTTACTTTATTTTTATTTTTGCCTC
ACATAGCGTGTAGAGGGGAGCGGAGGGCTCCAGACTATTTGTTTCCTGGT
TTTTTTATTTTTCTCGTATTTTATCGCTCTGCTGACCCTTGGGGTCCGTT
TTATTTTTCAGTATACCTTTTTAGGTAAGTTAGCTTGTGACCACGGAAAT
TGGCCGCGTCAAGTGATGGATTAGTACGGAGAGGTTGAGACAGAAGGAGG
TACTGGATAGAGACGAGACCGGGATGGTTTTTAATGTGAAGACAACAACA
ACAATAATAACATCAGAAAATATATGGGTGTTTTATTTTTATTTTTACTC
ACAATTTTTTGTTTCATAATTTTTTGGTTTGGGGTAAGCAATATCATAAA
TATGGCACATATCATAAATTACGTGTTCGTATTTATTTGTGAGTGCTGCC
GCAACGGATCGATTGTGTTTTTGCGATTTGACGCAAATAGTCTCTCTGCG
TGTAAGTGAGTGTGTGGTTTTCCAGCACATGCTCAGGGCCTCATCACGCA
CGCCCTTGCGGTGGCCCCACGAGAAGCCTCGCATCCCACGCGGCGGGCGA
ACCCCACGCGGGCGAACCTGTAAATTGCACTAGCAGCAACATTACGTTGT
CTTCGGCATGTTCAGAGACAATCTCACAACAAACGTTTTCGTTGTCAACG
TCACCGATGAAGAGGGACTTGTTTCCCCTGATTGCGCATGCACGCTTGTT
CCCCAGAGCACTTGTGAAAGAAAACTCCGCTGCGCGGTGCCGCTGCCCCC
ACCCCCAACATGTTCTACCCTCGTCGTCCGTTATGTGATGTCCTCGCTGA
TGTGTCCGCAACATGTTTTCGGGTTTGCCCTCCGCTGGGATATTAACGTT
TTTGCCCAATACGATCATCACCACGGGGAGGGGGCAACCCTTGGAGGCAT
AATAAATAGAGGTATATTTTAGCTGTGACGTGCGCCCGTTGAAAACTTGT
CCCAAATTGCTTGTACACATGTTGTACTTGAAGTACAGGATAGGCACTTC
TAACGTGACCAAGCCCGAACTGTGCTGGCCCCGTTTCGCAGAGCCCAAAG
ATCGAGTGGTTGTTGGGCTACAGTGTCGAACAAATGTCACGGCTGAAGGC
GTTGGAAGTGTTGGGGATCAGCTCCGCAATGCTAGAGGAAGAAAAGGCCC
GGATTCTCGGGAGCCTCGGGGTCAAGGCTTGGGGACATCCGGGCAGTTCC
GCCGTGATCGAGAATCCTCAAGACAACGTTGGTTCTTGCGTTCCCAGAAA
GCGCCGAAACACTGCATCCGAGGCACCGAGAGTGCCCGCGCCGACGTGCG
GCATGGCTTCTCCCTCTCCGTCCGAG GTGAGCCGCCTCTTCGCTGCGCAC
GTTTTCCTTTCTTATCTGGCGCAGGAGATACTGCCGAGGTCGTGGCGTAC
AATACAAAGAAGGCGGTGAGATCCATCTCTGTTTCATCATGCTGGAAACA
GCCACAACAGCGATCTATCGCATAATGACCCACCATGTTTCTCCCACACA
CACAGGTGGCCGAGCTCGAAGATGAATGCTTGTCTCAACACCTGAGGATC
CAACAACTCGAGCTACAG GTGAGCGATGGCGGCGCTCAAAATCCTTTTAC
TATGATATGGGTTTCAGAAAACGAACAACCGTCTGCGCCGCGGGCACAAT
TCCAGTACCCCCGAAACCCTCATCCATGAACCTAAAATTTGATTGTTGAC
CACCTACACATAGAATCTCTTAGGTCACTTTGCTCTTCTTTTCCTACGAG
CGAGATGGACGATCCGCGTTTCTTCTTTAAACGCCATACGTGGGAACAAA
TGATCGAGTTGAAAGCGGAAGGCCTACCGCTTGGCATCGTCTACCGGCTT
GCAAGTATCTAATTTTTTCTATCTTATTCGCGCAGGTGGCGGCGCTTTCA
CTTTCTGAGTCATGCACGGGCAAGGACAAGGGTCAGGGCTAA GGTCGGGG
GCCTGTAGCTGCTCGTGGCAGACGTTGGATGCCGTCCCGGAACGTAGATC
ACCCGCGCGGTACATATATATAAGTATGTGCTTTTGTTTTTGCGCCAGCG
CCACTTATCAAGCTCACGTGTTTCTGTGACGTGTCGATGTTTGTTTATGT
GGTCGGCCTGTGCCACGTTTTTTTCCATTTGTGGCCTGGAGTGATATGAT
GGTGCTTAATAGTAGCGAATATTGTTTCAGGATACGTGTTATGTACTCGT
CGTCGATAATGTATATAGATAGATCGTTTATGTCAAGAGTCCCGCTTCCC
GTGACTAAGCCGTCACTAGGAGGGTGTTTGACAGCAGAAAACTTCGAGGG
TGATACGGGTGCGAAGAGCCATTGATAGCAGTAGATGTTCACTACCGAGA
CTTTGCGTATTGCTCTCGCCTGATGTTTGTTGCGTGTTCGTCTTTGCTGC
CGGGGGCTTGTGTAGGAATATATACTCCCTCTGATAAGCAATATAAGTCC
GATAAGGAAATTCCATATATAAGTCCGTTTTCTCGTTAGGACGTTCGGAC
AGGTTTATTTTGCACCAAATGTTTTTCATCATGCTCCCTTCGGCAGTACA
AAGAAAGAAATGGCCTAAAATAGGAGATGGTTGATTTTCATCCCCTCCCA
TAGATTTTTTTTTCTCCGAACGGATCTTCGGCAGATCTGGTCAGTACAAT
TAGGAAAAGAGAAGATAAGTGTCGTTTTTTCTCAATAACGAAGCGAGGAA
AATGTTTTTTTACAGTCTGTTTTATTGTTTGAAATCTTGGCTGTATGTAG
CCACCCTGTGAACGTGCACTTTGGGGTTGAAAAAAAACTTCCCTGTTGGT
TGGAGGAAACAAATCAGGGTGCCAAAAATTGGGATTTTTGAAGTAAAAAA
ACAGGAGAAAAAAAAGGAAAAGAGAGAAGAAAAGAGTGCTTTTTTCGAAC
AAAAAAAGGTGTTTAAAGTGGGAACCGAACTCTCGTCCTAATCTTCAATC
GTCATCTTGACGCGGTAGGGAAAATGTCTAAACCGGACGTACATTGCTGA
TCAGAGGGAGTATATGTTTTCCCGATGAAAGTGTTTTGATTATTGTTGTT
TTCTCTCTTGTGTGCCAAAGTGTTGTTCACTCTGCGCGGACGTGTTGGGA
TGGGTGCTGCCAAATGAGGGATGGTCAGTACTTTTGTCGAGATGGCGGTC
AGCCGCGGGGTCTGTTCGTAGCCGTAAGGTTCACAGACATGCTACGAGTG
TTATCAAAAGTATTTCTGATCGCGTGATGCGGCCACCACCATCTACACGC
AGGACAACGGCGCTGTTCAATCAATATCAGCATCCTCTTCTAGGCAGCAT
CCACCTTCTAGGCAGGCGCGCAACTATAAACGCCTGTTTCCAACGACAGG
GCTTC back to top Coding sequence (CDS) from alignment at C-linearis_contig102:502210..506814+
>mRNA_C-linearis_contig102.800.1 ID=mRNA_C-linearis_contig102.800.1|Name=mRNA_C-linearis_contig102.800.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1122bp|location=Sequence derived from alignment at C-linearis_contig102:502210..506814+ (Chordaria linearis ClinC8C monoicous) back to top