mRNA_C-linearis_contig102.800.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig102.800.1 vs. uniprot
Match: D7FYL6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYL6_ECTSI) HSP 1 Score: 141 bits (355), Expect = 2.340e-35 Identity = 86/164 (52.44%), Postives = 107/164 (65.24%), Query Frame = 2 Query: 56 GVSLAQAQRVQALLQLGVTEQDVQIAERLMSTTPPGDPDNSPKIEWLLGYSVEQMSRLKALEVLGISSAMLEEEKARILGSLGVKAWGHPGSSAVIENPQDNVGSCVP--RKRRNTASEAPRVPAPTCGMASPSPS---EVAELEDECLSQHLRIQQLELQVAA 532
G + Q RVQALL+LGVTE+DV++A L+ P + K EWLL S+EQMSRLKALE LG+S MLEE++ RILG LG+ WG+PG S V + +C P RKR++ A R G+A P+ EVA+LEDECLSQHLRIQQLEL+VAA
Sbjct: 6 GATPQQVLRVQALLKLGVTEEDVRLAAELLR---PRTNNEGTKAEWLLSLSMEQMSRLKALEELGVSQDMLEEDRGRILGDLGIPRWGNPGDSMVDAERDSSTSACGPVFRKRQHIEGTAKR-----WGLAQPTRQKEVEVAKLEDECLSQHLRIQQLELEVAA 161
BLAST of mRNA_C-linearis_contig102.800.1 vs. uniprot
Match: A0A6H5K919_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K919_9PHAE) HSP 1 Score: 120 bits (300), Expect = 2.270e-28 Identity = 68/120 (56.67%), Postives = 83/120 (69.17%), Query Frame = 2 Query: 182 KIEWLLGYSVEQMSRLKALEVLGISSAMLEEEKARILGSLGVKAWGHPGSSAVIENPQDNVGSCVP--RKRRNTASEAPRVPAPTCGMASPSPS---EVAELEDECLSQHLRIQQLELQV 526
K EWLL SVEQMSRLKALE LG+S AMLEE++ RILG+LG+ WG+PG S V + +C P RKR++ + A R G+A P+ EVA+LEDECLSQHLRIQQLEL+V
Sbjct: 2 KAEWLLSLSVEQMSRLKALEQLGVSQAMLEEDRGRILGNLGIPRWGNPGDSMVDTEQDSSTSTCGPIFRKRQHIEATAKR-----WGLAQPTRQMEVEVAKLEDECLSQHLRIQQLELEV 116
BLAST of mRNA_C-linearis_contig102.800.1 vs. uniprot
Match: D7FYM0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM0_ECTSI) HSP 1 Score: 107 bits (268), Expect = 1.380e-22 Identity = 73/166 (43.98%), Postives = 97/166 (58.43%), Query Frame = 2 Query: 56 GVSLAQAQRVQALLQLGVTEQDVQIAERLMSTTPPGDPDNSPKIEWLLGYSVEQMSRLKALEVLGISSAMLEEEKARILGSLGVKAWGHPGSSAVI-ENPQDNVGSCVPRKRRNTASEAPRVPAPTCGMASPSPSEVAELEDECLSQHLRIQQLELQVAALSLSES 550
GV+ QA R QALL+LGVT++DV+IAERLM + G + K EWLLG + QMS KAL+VLGIS A++EEE++R LG LG G S + +D G +KRR++ E A+ S V +LE+ C +Q RIQ+LE Q+A LS S
Sbjct: 84 GVTQKQALRTQALLRLGVTDEDVRIAERLMGSRSEGADNTPSKEEWLLGVTYAQMSFHKALQVLGISEAVVEEERSRRLGELGSGGRGGGASECGAGQEAEDTCGRFFIKKRRSSIEELGTTLPGEVAFAN---SRVLQLEEVCHTQMTRIQELESQLAVLSARSS 246
BLAST of mRNA_C-linearis_contig102.800.1 vs. uniprot
Match: A0A836CJU9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJU9_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 1.410e-13 Identity = 57/148 (38.51%), Postives = 79/148 (53.38%), Query Frame = 2 Query: 32 ETALHTLSGVSLAQAQRVQALLQLGVTEQDVQIAERLMSTTPPGD---------------PDNSPKIEWLLGYSVEQMSRLKALEVLGISSAMLEEEKARILGSLGVKAWGHPGSSAVIENPQDNVGSCVPRKRRNTASEAPRVPAPT 430
ET + GVS+ Q +R QALL+LGVTE D+++AERL + P G+ P K E LLG + ++S KALEVLG+ A++EEE+AR LG LG + + + D+ V R+R S APR P P+
Sbjct: 84 ETIMQKQFGVSMEQMKRTQALLRLGVTEDDLKVAERLFAELPGGEELRKARAEGVISPAIPRKLSKEERLLGLTKSEISFCKALEVLGVDMAIVEEERARRLGQLGQQRSSDAIGDVISD---DDSSESVLRRRALLPSPAPRAPTPS 228
BLAST of mRNA_C-linearis_contig102.800.1 vs. uniprot
Match: D8LT43_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT43_ECTSI) HSP 1 Score: 67.0 bits (162), Expect = 1.770e-9 Identity = 38/90 (42.22%), Postives = 60/90 (66.67%), Query Frame = 2 Query: 56 GVSLAQAQRVQALLQLGVTEQDVQIAERLMSTTPPGDPDNSP-KIEWLLGYSVEQMSRLKALEVLGISSAMLEEEKARILGSLGVKAWGH 322
G++L Q +RV+ALL++GV E+D++IA+RL+ D P K E LLGY+ +Q R+KAL +LG++ + +A +L SLG A+G+
Sbjct: 6 GMNLMQMKRVKALLRMGVCEEDLEIADRLLKMGLNWSNDTPPTKEEQLLGYNSQQRQRMKALHILGLTEESFDRCRAVMLSSLGPSAFGY 95
BLAST of mRNA_C-linearis_contig102.800.1 vs. uniprot
Match: A0A6H5KHW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHW8_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 5.060e-8 Identity = 38/90 (42.22%), Postives = 60/90 (66.67%), Query Frame = 2 Query: 56 GVSLAQAQRVQALLQLGVTEQDVQIAERLMSTTPPGDPDNSP-KIEWLLGYSVEQMSRLKALEVLGISSAMLEEEKARILGSLGVKAWGH 322
G++L Q +RV+ALL++GV E+D++IA+RL+ D P K E LLGY+ +Q R+KAL +LG++ + +A +L SLG A+G+
Sbjct: 227 GMNLMQMKRVKALLRMGVCEEDLEIADRLLKMGLNWSNDTPPTKEEQLLGYTSQQRQRVKALHILGLTEESFDRCRAVMLSSLGPSAFGY 316
BLAST of mRNA_C-linearis_contig102.800.1 vs. uniprot
Match: B8BQR6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQR6_THAPS) HSP 1 Score: 58.2 bits (139), Expect = 5.000e-6 Identity = 45/153 (29.41%), Postives = 77/153 (50.33%), Query Frame = 2 Query: 80 RVQALLQLGVTEQDVQIAERLMSTTPPGDPDNSPKIEWLLGYSVEQMSRLKALEVLGISSAMLEEEKARILGSLGVKAWGHPGSSAVIENPQDNVGSCVPRKRRNTASEAPRVPAPTCGM-ASPSPSEVAELEDECLSQHLRIQQLELQVAAL 535
R + L +LGV+E+DVQ+A RLM P D + K E +LG++ +++R KAL +LG S +E E A+ +G+LG+ S N Q ++ + R S + P+ T S +E+ L ++ + + I+ L ++ L
Sbjct: 19 RSKGLEKLGVSEEDVQLAARLMQQIPTCTSDPN-KAERILGFASSRLAREKALRLLGASEEEVEVENAKTMGALGIAGRRRSYSVMHSANQQHSLLLSKKSQLRKRTSSIVKSPSRTSAKHRRRSSAEIRMLRNQARTSAIEIESLRARIEEL 170 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.800.1 >prot_C-linearis_contig102.800.1 ID=prot_C-linearis_contig102.800.1|Name=mRNA_C-linearis_contig102.800.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=187bp MNLPETALHTLSGVSLAQAQRVQALLQLGVTEQDVQIAERLMSTTPPGDPback to top mRNA from alignment at C-linearis_contig102:502210..506814+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig102.800.1 ID=mRNA_C-linearis_contig102.800.1|Name=mRNA_C-linearis_contig102.800.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4605bp|location=Sequence derived from alignment at C-linearis_contig102:502210..506814+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig102:502210..506814+ >mRNA_C-linearis_contig102.800.1 ID=mRNA_C-linearis_contig102.800.1|Name=mRNA_C-linearis_contig102.800.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1122bp|location=Sequence derived from alignment at C-linearis_contig102:502210..506814+ (Chordaria linearis ClinC8C monoicous)back to top |