mRNA_C-linearis_contig102.795.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig102.795.1 vs. uniprot
Match: D7FYM2_ECTSI (FkbM family methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYM2_ECTSI) HSP 1 Score: 709 bits (1831), Expect = 1.950e-239 Identity = 509/956 (53.24%), Postives = 601/956 (62.87%), Query Frame = 1 Query: 85 DDASTVSFGSELHRPMKYQHEPPSPRQD-------PATPVAWSRSTGNRTHSNIIDKSFS----RE-ADVTARIYSSSSSPG-DSSVEEVATRRHQQELHQRATRR---HHRRSDRDRQRMRPTHADD-KMAATVALLKCELQATRSQVEQKEVVTRSLQRQLDQRGEIEEQIQARAEEDLVAALAKASGLKEELARTSQLLVEGALARQHLEQRCSALTQNLHESVTRTAELGEEVSVSRAELVRISGALHARRGTDVVDAERAFGEELQRVQENATREARGLRQXXXXXXXXXXXXXXXXXXSCGERESWREXXXXXXXXXXXLRETVHALRQYSENDTIDRLLGQARAKPAIGTLFFGRCFSLVSRWKHRAEEQEGLQRVASSPEGFAFGSSNSETEASHCTESVEPSVSPRASG-LPFAALDLATTPTRKQREERHEVEEAGHEAATNSLRQELSEVKKTLAVMEEELTTAVLAAREQGVERAAAESCVKSLQREAEANARAAREDVAARRAAKVRDMAKLKNAIRQDMVEELFRLQREVREQRQEEKPQ--TTDGAAPCKCQTECSRRPLGEDKACQTDD---AIAPSAEEGGLVVHEDNLSRACASCXXXXXXXXXXXXDVANHASPRAATTALEEEAEKRIAAALASAAVAQVGATAWASAFSAATQLFHAALASLCDEAT---GRSGEDDGRHAFGVPLLTGTEASGSNKASTSAVVPWVPGEAKTDAATALQALRDSVQSAVEGIRLTAGRAAQETMPPASNVT--TTGSQTVAEPPAAVVPVVSRN---------------TIGSQTDEKPKRKVLWARRHGAGVQAGGRPSRWNAETFSGGGG---APAWEGDIVRRCLEGERVDGDGEPRIKQPD-TRVEELERTAGAL----QRAEAEKEGLEQILTRRFEHEKATLLKQQRDIFEEDIGELYTSMMAMVHDF 2799
+DAS VSFGSE P K+ + P SPR D P PV WSR + ++D + RE ADVT RIYSSSSS + S E VA RHQ + H R T H RR+DR + A+TVALL EL RSQ+EQK+VV RSLQRQLDQRGE+E Q QARAEEDLVAALAKASGLKEEL RTSQLLV+GALARQHLEQRCS LT+ L ++ TRT EL EV+VSRAE+VRISGALHARR TDVVDAERAFGEELQRVQE+A RE R L Q +CGER+SWRE LRETV ALRQYSENDTID+LLGQ VSRWK RAEE E LQRVASSPE AF S+SETE S CTESVEP SP G P AA + TT ++++EE +V GHEA +SLRQELSE KK+L + EE+ AVL AR+Q RAAAESCV+ LQR+AEANARAARE V ARRAAK RDMA LK AI+QDMV+EL +LQ EVR+QRQEE+ TTD +C E SR P+G DKACQ+D+ +IA S+ E G+VV + L++ A+C D ++ + T LE+EAE+R++AALASAAVAQVGATAWASAFSAA +LFH AL SLC++A G + +GR A + L G + N+AS SA+VPW P EA+ DAA A++ LRD V+S++E R T P + +T T GSQT AEPP VSR T GSQTDE ++ +RH GVQAG W ET G GG APAWEG + RC EGE+ DGD R K D R+EELE AGAL QRAE EK LE+ LTRRF+ EKA LK+QRD +E DIG L+ S MA++ DF
Sbjct: 32 NDASLVSFGSEEPTPTKHHYVPRSPRDDAYSNTARPWRPVGWSRVVDTSVPTAVVDNPEAGLGGREVADVTTRIYSSSSSCATERSTERVA--RHQGKRHHRHTDSAADHERRTDRXXXXXXXXXXXXXETASTVALLTNELVIVRSQIEQKDVVVRSLQRQLDQRGELEAQTQARAEEDLVAALAKASGLKEELTRTSQLLVDGALARQHLEQRCSVLTEELQKTATRTTELENEVAVSRAEVVRISGALHARRSTDVVDAERAFGEELQRVQESAARETRTLGQEASGLRTLLEQTKSKLRNACGERDSWREEADSFSSEAATLRETVQALRQYSENDTIDQLLGQ------------------VSRWKRRAEELENLQRVASSPERSAFDGSSSETEPSRCTESVEPLPSPTMEGGPPLAAEAIPTTVFQEEKEEHEKVLGDGHEAEIHSLRQELSEAKKSLVMKGEEVAAAVLEARQQAAMRAAAESCVEGLQRKAEANARAAREHVVARRAAKARDMANLKIAIQQDMVDELHKLQCEVRKQRQEEQQLHGTTDTGL-SECSGERSREPVGLDKACQSDNTIASIASSSTEEGVVVESNILNKVGAACPACGVDLADSGADGSSIVASPKVTVVLEDEAERRVSAALASAAVAQVGATAWASAFSAARRLFHTALVSLCEQADCLFGADAKGNGRQALVLSPLVGLTTALRNEAS-SAMVPWAPSEAEADAAAAMEVLRDDVESSMERFRSALADHLVRTAPLSLTLTMATVGSQTTAEPPTDSTTAVSRTXXXXXXXXXXXLPRATSGSQTDEVGIVELKVDQRHNVGVQAGNLGG-WRTETAPGAGGRGGAPAWEGGMDSRCSEGEKYDGDRSWRPKSEDHARMEELELKAGALSAALQRAEKEKSNLERSLTRRFKREKAMQLKKQRDKYEADIGALHVSTMALLQDF 964
BLAST of mRNA_C-linearis_contig102.795.1 vs. uniprot
Match: A0A6H5JZ16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ16_9PHAE) HSP 1 Score: 349 bits (896), Expect = 4.230e-108 Identity = 234/384 (60.94%), Postives = 261/384 (67.97%), Query Frame = 1 Query: 1 MEALSRKTEKEKLLELEEMLADATTL--TADDASTVSFGSELHRPMKYQHEPPSPRQDPAT-------PVAWSRSTGNRTHSNIIDKSF------SRE-ADVTARIYSSSSS-PGDSSVEEVATRRHQ-QELHQRATRRHHRRSDRDRQRMRPT-HADDKMAATVALLKCELQATRSQVEQKEVVTRSLQRQLDQRGEIEEQIQARAEEDLVAALAKASGLKEELARTSQLLVEGALARQHLEQRCSALTQNLHESVTRTAELGEEVSVSRAELVRISGALHARRGTDVVDAERAFGEELQRVQENATREARGLRQXXXXXXXXXXXXXXXXXXSCGERESWREXXXXXXXXXXXLRETVHALRQYSENDTIDRLLGQARAKPA 1095
MEALSRKTEKEKL +LE MLADAT DDAS VSFGSE P K+ + P SPR D A+ PV WSR + ++D RE ADVT RIYSSSSS + S E V RRHQ + H+ H RR+DR R++ PT D + AATVALL EL RSQ+EQK+VV RSLQRQL+QRGEIE Q QARAEEDLVAALAKASGLKEEL RTSQLLV+GALARQHLEQRCS LT+ L +S TRTAEL EV+VSRAE+VRISGALHARR TDVVDAERAFGEELQRVQE+A RE R L+Q +CGER+SWRE LRETV ALRQYSENDTID+LLGQA A A
Sbjct: 1 MEALSRKTEKEKLADLEAMLADATCSGDVTDDASLVSFGSEEPTPTKHHYVPRSPRDDAASNTAGPWRPVGWSRVVDTSVPT-VVDNPVLEAGVGGREVADVTTRIYSSSSSCTTERSTERVVPRRHQGKRPHRHTAADHERRTDRRRRQRHPTPERDHETAATVALLTNELVIVRSQIEQKDVVVRSLQRQLEQRGEIEAQTQARAEEDLVAALAKASGLKEELTRTSQLLVDGALARQHLEQRCSVLTEELQKSATRTAELENEVAVSRAEVVRISGALHARRSTDVVDAERAFGEELQRVQESAARETRTLKQEASGLRTLLEQTKSKLRNACGERDSWREEADSFSSEAATLRETVQALRQYSENDTIDQLLGQAWANLA 383
BLAST of mRNA_C-linearis_contig102.795.1 vs. uniprot
Match: A0A6H5K4I8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4I8_9PHAE) HSP 1 Score: 341 bits (875), Expect = 4.500e-103 Identity = 257/531 (48.40%), Postives = 323/531 (60.83%), Query Frame = 1 Query: 1303 LDLATTPTRKQREERHEVEEAGHEAATNSLRQELSEVKKTLAVMEEELTTAVLAAREQGVERAAAESCVKSLQ----REAEANARAAREDVAARRAAKVRDMAKLKNAIRQDMVEELFRLQREVREQRQEEKP-QTTDGAAPCKCQTECSRRPLGEDKACQTDDAIAPSAEEGGLVVHEDNLSRACASCXXXXXXXXXXXXDVANHASPRAATTALEEEAEKRIAAALASAAVAQVGATAWASAFSAATQLFHAALASLCDEAT---GRSGEDDGRHAFGVPLLTGTEASGSNKASTSAVVPWVPGEAKTDAATALQALRDSVQSAVEGIRLTAGRAAQET--MPPASNVTTTGSQTVAEPPAAVVPVVSRNTIG---------------SQTDEKPKRKVLWARRHGAGVQAG--GRPSRWNAETFSGGGGAPAWEGDIVRRCLEGERVDGDGEPRIKQPD-TRVEELERTAGAL----QRAEAEKEGLEQILTRRFEHEKATLLKQQRDIFEEDIGELYTSMMAMVHDF 2799
L TT +++++EE +V EA +SLRQELSE KK+LA+ EE+ AVL AR+Q RA AESCV+ LQ R+AEANARAARE V ARRAAK RDMA LK AI+QDMV EL +LQ EVR+QRQEEK T KC E SR P+G DKACQ+DD IA S++E G+++ D L+R A+C D ++ + T LE+EAEKR++AALASAA+AQVGATAWASAFSAA LFHAALASLC++A G + +GR A + L G + ++AS SA+VPW P EA+ DAA A++ LRD V+S+V+ I+ ++ T + A + T GSQT AE P VS SQTDE ++ +RH GVQ G G A G GGAPAWEG + RC EGE DGD R K D R++ELE AGAL QR+E EK LE+ LTRRF+ EKA LK+QRD +E DIG L+ S MA++ DF
Sbjct: 7 LAAPTTVSQEEKEEHEKVLGDRQEAEIHSLRQELSEAKKSLAMKGEEVAAAVLEARQQAAMRAVAESCVEGLQATLGRKAEANARAAREHVVARRAAKARDMANLKIAIQQDMVNELHKLQCEVRKQRQEEKKLHGTKDTELSKCSGERSREPVGVDKACQSDDTIASSSKEEGVMMESDILNRVGAACSACGVDLTDSGADGSSIVASPKVTVVLEDEAEKRVSAALASAAMAQVGATAWASAFSAARCLFHAALASLCEQADCLFGADAKGNGRQALVLSPLVGLTTALRDEAS-SAMVPWAPSEAEADAAAAMEVLRDDVESSVKRIQSALADHSERTAALSLALTMATVGSQTTAESPTDSAITVSXXXXXXXXXXXXXXXXXXXXSQTDEVGIMELKVGQRHNVGVQTGYLGGRRPETAPGAGGRGGAPAWEGGMESRCREGETYDGDRLWRPKSEDHARMDELELKAGALSAALQRSEKEKSSLERSLTRRFKREKAMQLKKQRDKYEADIGALHASTMALLQDF 536 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.795.1 >prot_C-linearis_contig102.795.1 ID=prot_C-linearis_contig102.795.1|Name=mRNA_C-linearis_contig102.795.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=955bp MEALSRKTEKEKLLELEEMLADATTLTADDASTVSFGSELHRPMKYQHEPback to top mRNA from alignment at C-linearis_contig102:445321..451073+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig102.795.1 ID=mRNA_C-linearis_contig102.795.1|Name=mRNA_C-linearis_contig102.795.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5753bp|location=Sequence derived from alignment at C-linearis_contig102:445321..451073+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig102:445321..451073+ >mRNA_C-linearis_contig102.795.1 ID=mRNA_C-linearis_contig102.795.1|Name=mRNA_C-linearis_contig102.795.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5730bp|location=Sequence derived from alignment at C-linearis_contig102:445321..451073+ (Chordaria linearis ClinC8C monoicous)back to top |