Homology
BLAST of mRNA_C-linearis_contig102.784.1 vs. uniprot
Match:
D7FSJ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ9_ECTSI)
HSP 1 Score: 93.2 bits (230), Expect = 8.820e-24
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 1
Query: 1 MGASYSLVGVSYHLALGAGSRNHFASQMRLRGRWHTYDCLDGGVVTSFDNFDPAWNASSPH 183
MGA+YSLVGVSYH+A G +NHF +Q+R+RGRWH YDCL GG +TS D FD WN+SS +
Sbjct: 1 MGAAYSLVGVSYHIAHGGSRKNHFVTQLRVRGRWHKYDCLAGGAITSSDTFDADWNSSSQY 61
BLAST of mRNA_C-linearis_contig102.784.1 vs. uniprot
Match:
D7G7U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U5_ECTSI)
HSP 1 Score: 93.2 bits (230), Expect = 1.210e-22
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 1
Query: 1 MGASYSLVGVSYHLALGAGSRNHFASQMRLRGRWHTYDCLDGGVVTSFDNFDPAWNASS 177
MGA+YSLVGVSYH+A G +NHF +Q+R+RGRWH YDCL GG VTS D FD WN+SS
Sbjct: 1 MGAAYSLVGVSYHIAHGGSRKNHFVTQLRVRGRWHKYDCLAGGAVTSTDTFDADWNSSS 59
BLAST of mRNA_C-linearis_contig102.784.1 vs. uniprot
Match:
A0A6H5KDI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI5_9PHAE)
HSP 1 Score: 80.9 bits (198), Expect = 2.240e-17
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 1
Query: 1 MGASYSLVGVSYHLALGAG-SRNHFASQMRLRGRWHTYDCLDGGVVTSFDNFDPAWNASSPH 183
MG +YSLVG+S LALG G +RNHF SQ+ +RGRWH DCL GG+VTS D F W+ SS H
Sbjct: 102 MGVTYSLVGISCFLALGGGPNRNHFVSQVWIRGRWHKDDCLQGGIVTSSDAFGSGWHVSSVH 163
BLAST of mRNA_C-linearis_contig102.784.1 vs. uniprot
Match:
A0A6H5KPV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV6_9PHAE)
HSP 1 Score: 52.0 bits (123), Expect = 3.430e-6
Identity = 20/32 (62.50%), Postives = 23/32 (71.88%), Query Frame = 1
Query: 88 LRGRWHTYDCLDGGVVTSFDNFDPAWNASSPH 183
L GRWH YDCL GG+VTS D +D W+ SS H
Sbjct: 574 LCGRWHKYDCLQGGIVTSSDAYDSGWHVSSVH 605
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.784.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 4
0 1 Expect = 8.82e-24 / Id = 63.93 Expect = 1.21e-22 / Id = 67.80 Expect = 2.24e-17 / Id = 61.29 Expect = 3.43e-6 / Id = 62.50 Sequence D7FSJ9_ECTSI D7G7U5_ECTSI A0A6H5KDI5_9PHAE A0A6H5KPV6_9PHAE back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 1 Model size 183 Cds size 183 Stop 0 Start 1
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927369.6229796-CDS-C-linearis_contig102:274165..274348 1622927369.6229796-CDS-C-linearis_contig102:274165..274348 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig102 274166..274348 - 1690879658.5423882-CDS-C-linearis_contig102:274165..274348 1690879658.5423882-CDS-C-linearis_contig102:274165..274348 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig102 274166..274348 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.784.1
>prot_C-linearis_contig102.784.1 ID=prot_C-linearis_contig102.784.1|Name=mRNA_C-linearis_contig102.784.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=61bp
MGASYSLVGVSYHLALGAGSRNHFASQMRLRGRWHTYDCLDGGVVTSFDN back to top mRNA from alignment at C-linearis_contig102:274166..274348-
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig102.784.1 ID=mRNA_C-linearis_contig102.784.1|Name=mRNA_C-linearis_contig102.784.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at C-linearis_contig102:274166..274348- (Chordaria linearis ClinC8C monoicous)ATGGGGGCATCATATTCTTTGGTCGGAGTTTCGTACCATCTGGCGCTTGG
CGCCGGCTCTCGGAACCATTTCGCATCCCAAATGCGACTTCGGGGAAGAT
GGCACACCTACGATTGTCTGGACGGCGGGGTCGTCACTTCTTTCGACAAC
TTCGACCCTGCGTGGAACGCTTCGTCTCCACAC back to top Coding sequence (CDS) from alignment at C-linearis_contig102:274166..274348-
>mRNA_C-linearis_contig102.784.1 ID=mRNA_C-linearis_contig102.784.1|Name=mRNA_C-linearis_contig102.784.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at C-linearis_contig102:274166..274348- (Chordaria linearis ClinC8C monoicous) back to top