mRNA_C-linearis_contig102.784.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_C-linearis_contig102.784.1 vs. uniprot
Match: D7FSJ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ9_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 8.820e-24 Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 1 Query: 1 MGASYSLVGVSYHLALGAGSRNHFASQMRLRGRWHTYDCLDGGVVTSFDNFDPAWNASSPH 183
MGA+YSLVGVSYH+A G +NHF +Q+R+RGRWH YDCL GG +TS D FD WN+SS +
Sbjct: 1 MGAAYSLVGVSYHIAHGGSRKNHFVTQLRVRGRWHKYDCLAGGAITSSDTFDADWNSSSQY 61
BLAST of mRNA_C-linearis_contig102.784.1 vs. uniprot
Match: D7G7U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U5_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 1.210e-22 Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 1 Query: 1 MGASYSLVGVSYHLALGAGSRNHFASQMRLRGRWHTYDCLDGGVVTSFDNFDPAWNASS 177
MGA+YSLVGVSYH+A G +NHF +Q+R+RGRWH YDCL GG VTS D FD WN+SS
Sbjct: 1 MGAAYSLVGVSYHIAHGGSRKNHFVTQLRVRGRWHKYDCLAGGAVTSTDTFDADWNSSS 59
BLAST of mRNA_C-linearis_contig102.784.1 vs. uniprot
Match: A0A6H5KDI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI5_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 2.240e-17 Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 1 Query: 1 MGASYSLVGVSYHLALGAG-SRNHFASQMRLRGRWHTYDCLDGGVVTSFDNFDPAWNASSPH 183
MG +YSLVG+S LALG G +RNHF SQ+ +RGRWH DCL GG+VTS D F W+ SS H
Sbjct: 102 MGVTYSLVGISCFLALGGGPNRNHFVSQVWIRGRWHKDDCLQGGIVTSSDAFGSGWHVSSVH 163
BLAST of mRNA_C-linearis_contig102.784.1 vs. uniprot
Match: A0A6H5KPV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV6_9PHAE) HSP 1 Score: 52.0 bits (123), Expect = 3.430e-6 Identity = 20/32 (62.50%), Postives = 23/32 (71.88%), Query Frame = 1 Query: 88 LRGRWHTYDCLDGGVVTSFDNFDPAWNASSPH 183
L GRWH YDCL GG+VTS D +D W+ SS H
Sbjct: 574 LCGRWHKYDCLQGGIVTSSDAYDSGWHVSSVH 605 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.784.1 >prot_C-linearis_contig102.784.1 ID=prot_C-linearis_contig102.784.1|Name=mRNA_C-linearis_contig102.784.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=61bp MGASYSLVGVSYHLALGAGSRNHFASQMRLRGRWHTYDCLDGGVVTSFDNback to top mRNA from alignment at C-linearis_contig102:274166..274348- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig102.784.1 ID=mRNA_C-linearis_contig102.784.1|Name=mRNA_C-linearis_contig102.784.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at C-linearis_contig102:274166..274348- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig102:274166..274348- >mRNA_C-linearis_contig102.784.1 ID=mRNA_C-linearis_contig102.784.1|Name=mRNA_C-linearis_contig102.784.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at C-linearis_contig102:274166..274348- (Chordaria linearis ClinC8C monoicous)back to top |