mRNA_C-linearis_contig102.782.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig102.782.1 vs. uniprot
Match: D7FH23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH23_ECTSI) HSP 1 Score: 464 bits (1195), Expect = 3.980e-145 Identity = 416/906 (45.92%), Postives = 482/906 (53.20%), Query Frame = 2 Query: 29 MEACNGFVWTAWLALVTLQATFCGSFMVPPQATTARPKCKPGRYSGPPAQRTTQQAAAVGGATAPLRRPNALVSPQPRRSIRASFVLPLAVASKNDASTSGDASGSGEQP--TGDRSSSREGDVATDEAPAAV---VQAETQRLMSVPTIDIKLELQMRGVEHRDAFEKVDLARRLVEARIS-CPSPPATAPSVP--------------GNDNDDARDRPGTKEPVNGTEGPTASVGGNEAGQESPVGEKDDKGRA---AGSAVYARDVAKATRMGKTAVSRELNVMGIAHSRLSDVSVLARLYANGRRQAREDAEEARRFPRAARAADSSADGGGAEGRAHGNGER-----------------EGWGEEGGSGDEDERWRNTREQWGRVASGLPRNGGKKRXXXXXXXXXXGWGASSTDVPFG----DEAGEGGSSETGWSVRANSGSAPSSSRGGGGGAISNQGRSRKASLHARADRMSSRELMKALDGLGAQYRIPAPRLELQDAFVSAVLA--EDARNQGDLGPRGEGERAE-IVPVSPYAATAGEEDGLDEEAMKKRSGAGFGTYHAALRWARQLNFDDVLEELEYRGVTHNSRADYSYLTRLLADEGLTGEELMEAEG-VEGAIWFCWVYTAELELAMAMSAQEIIRDVRAGGERVDVTQSKEALAQKLAEMNTRLRGESLPDSGSSDAFYRQRRP------------------KARGRAVAGASDDLLGHDGSGGHGEDVLLELEEAAKSVGGAALLVAKESAAFVSQTAAGLFSSVFPDEDGARESGSASVEXXXXXXXXXAGGGVVGDGARNAGQGRRARAARERAGGVGKAATGFAKSSVNRAGFAVAQSVANGALKGAEAAADWAGDGALALIRFGRITAQKLVSEGWKMEQQKR 2548
MEA N VW AWLAL TL+A CGSF++ R K +P S A + + G PL RP + PR S +S + PL+ + +D +G++P SS G V T AAV V ET+RLMS PTIDIKLELQMRGVEHRDAFEK DLARRL EAR+S C + P+ +P G D A G +E + + + +G + + +G A + YARDVA+ TRMGK A++RELN MGIAHSRLSD+SVLAR YA R++AREDA RRFP EGWG+ G R ASGLP GK+ XXXXXXX G G D P G D+ GE G SETGWS RAN+GSA ++ GGG ++ RSRKA LHARADRMSSRELMKALDGLGA+YRIPAPR ELQ AFVSAVLA ED R+Q D G R + IV VSPY E DG R GFGTYH+ALRWARQLNFDDVL+EL YRGV + RADYSYLTRLLADE L EELM EG EGA YTAELE AM+MSAQE+IRD+RAGGE DVT SKEALA++LAEM RLRGE LP SGSS + +ARG A D LG XXXXXXX + + R+ RAAR+RAGGV +AATG+A+SSVNRAGFAV QS+ANG L+GAEAAADWAGDGALA FGRI AQKLV EGWKME+ KR
Sbjct: 1 MEARN--VWVAWLALETLKAPLCGSFVLQQAPPPGRTKYEPAAGSRCSAATPRARCSCSRGLHDPLLRP---LLRSPRAS--SSAIAPLSGTADDDTLGRDGVGKAGDKPPAASSGSSHETGGVGTATGEAAVGTDVATETRRLMSEPTIDIKLELQMRGVEHRDAFEKADLARRLAEARVSSCGNNPSPSPDXXXXXXXXXXXXXXXAGRDFGGAA-ADGPRENAHRSNKASTMMGNEPQAAAATAVATEGRGAAPDGGSNRAYARDVARGTRMGKAALARELNGMGIAHSRLSDLSVLARQYAARRQEAREDA---RRFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGWGDARGQ---------------RAASGLPWRFGKEEXXXXXXXEAAGVG--DADFPLGGGGRDDVGEDGRSETGWSTRANAGSAATADGXGGG----DKERSRKAVLHARADRMSSRELMKALDGLGARYRIPAPRAELQQAFVSAVLAAEEDERSQADATAAAAGTRGKNIVAVSPYDTPIEEGDG------GLRGTQGFGTYHSALRWARQLNFDDVLDELRYRGVEQSPRADYSYLTRLLADEVLADEELMGGEGGPEGAD----AYTAELEAAMSMSAQEMIRDLRAGGEIADVTLSKEALAERLAEMKLRLRGEPLPHSGSSASXXXXXXXXXXXXXXXXXXXXXXXXXEARGPA------DPLGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXXXXQETERSRQVRAARQRAGGVRRAATGYAQSSVNRAGFAVLQSLANGLLRGAEAAADWAGDGALAR-EFGRIAAQKLVLEGWKMERAKR 851
BLAST of mRNA_C-linearis_contig102.782.1 vs. uniprot
Match: A0A6H5JDP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDP5_9PHAE) HSP 1 Score: 443 bits (1139), Expect = 3.970e-137 Identity = 412/896 (45.98%), Postives = 472/896 (52.68%), Query Frame = 2 Query: 71 LVTLQATFCGSFMVPPQATTARPKCKPGRYSGPPAQRTTQQA--AAVGGATAPLRRPNALVSPQPRRSIRASFVLPLAVASKNDASTSGDASGS-GEQPTG---DRSSSREGDVATDEAPAAV---VQAETQRLMSVPTIDIKLELQMRGVEHRDAFEKVDLARRLVEARISC----PSPPATAPSVPGNDNDDARDR------PGTKEPVNGTEGPTASVGGNEAGQESPVGEKDDKGRAA---GSAVYARDVAKATRMGKTAVSRELNVMGIAHSRLSDVSVLARLYANGRRQAREDAEEARRFPRAARAADSSADGGGAEGRAHGNGEREGWGEEGGSGDEDERWRNTREQWGRVASGLPRNGGKKRXXXXXXXXXXGWGASSTDVPFGDEAGEGGSSETGWSVRANSGSAPSSSRGGGGGAISNQGRSRKASLHARADRMSSRELMKALDGLGAQYRIPAPRLELQDAFVSAVLA--EDARNQGDLGPRGEGERAE-IVPVSPYAATAGEEDGLDEEAMKKRSGAGFGTYHAALRWARQLNFDDVLEELEYRGVTHNSRADYSYLTRLLADEGLTGEELMEAEG-VEGAIWFCWVYTAELELAMAMSAQEIIRDVRAGGERVDVTQSKEALAQKLAEMNTRLRGESLPDSGSSDAFYRQRRP-----------------KARGRAVAGASDDLLGHDGSGGHGEDVLLELEEAAKSVGGAALLVAKESAAFVSQTAAGLFSSVFPDEDGARESGSASVEXXXXXXXXXAGGGVVGDGARNAGQGRRARAARERAGGVGKAATGFAKSSVNRAGFAVAQSVANGALKGAEAAADWAGDGALA---------------------------LIRFGRITAQKLVSEGWKMEQQKR 2548
L+ QA CGSF++ + R K + +GP +A + + G PL RP + PR S +S + PL+ + +D + GD G G++P G D S G V T AAV V ET+RLMSVPTIDIKLELQMRGVEHRDAFEK DLARRL EAR+SC PSP G +E + + + + G + + +G A+ S+ YARDVA+ TRMGK A++RELN MGIAHSRLSDVSVLAR YA R++AREDA RRFP + S+ DG S XXXXXXXXXX TGWS RAN + RSRKA+LHARADR+SSRELMKALD LGAQYRIPAPR ELQ AFVSAVLA ED R+Q D G R E IVPVSPY A E DG R GFGTYH+ALRWARQLNFDDVL+EL+YRGV H+ RADYSYLTRLLADE L EELM EG EGA YTAELE AM+MSAQE+IRD+RAGGE DVT SKEALA++LAEM RLRGE LP SGSS GR A D L DG G DVLLELEEAAKSVGG XXXXXXXXX A+ + R+ RAARERAGGV +AATG+A+SSVNRAGFAV QS+ANG L+GAEAAADWAGDGALA +IRFGRI AQKLV EGWKME+ KR
Sbjct: 4 LLGSQAPLCGSFVLQQAPSPGRTKYE--AAAGPRCSAAAPRARCSCLWGLHDPLLRP---LLRSPRAS--SSAIAPLSGTADDD-TIGGDGVGKPGDKPPGADSDFDSDETGGVGTATGRAAVSTDVATETRRLMSVPTIDIKLELQMRGVEHRDAFEKADLARRLAEARVSCCGNNPSPSHDXXXXXXXXXXXXXXXLGGAAAHGPRESAHRSNKASTTTGNEPQAAAATAVPTEGRGAASDGCSSSAYARDVARGTRMGKAALARELNGMGIAHSRLSDVSVLARQYAARRQEAREDA---RRFPPS-----SALDG--------------------------------------SISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGWSTRANXXXXXXXXXXXXXXXXDME-RSRKAALHARADRLSSRELMKALDALGAQYRIPAPRAELQQAFVSAVLAAEEDERSQADATAAASGSRGENIVPVSPYDAPLEEGDG------GLRGTQGFGTYHSALRWARQLNFDDVLDELKYRGVEHSPRADYSYLTRLLADEVLADEELMGGEGGPEGAD----AYTAELEAAMSMSAQEMIRDLRAGGEIADVTLSKEALAERLAEMKLRLRGEPLPHSGSSXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGREPA---DPLGRRDGDG----DVLLELEEAAKSVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AQETERSRQVRAARERAGGVRRAATGYAQSSVNRAGFAVLQSLANGLLRGAEAAADWAGDGALAREYVLLFIAAFCLVFKRGVGAAVALLVVIRFGRIAAQKLVLEGWKMERAKR 826
BLAST of mRNA_C-linearis_contig102.782.1 vs. uniprot
Match: A0A836CCS4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCS4_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 2.650e-8 Identity = 53/146 (36.30%), Postives = 65/146 (44.52%), Query Frame = 2 Query: 443 LMSVPTIDIKLELQMRGVEHRDAFEKVDLARRLVEARISCPSPP--ATAPSVPGNDNDDARDRPGTKEPVNGTEGPTASVGGNEAGQESPVGEKDDKGRAAGSAVYARDVAKATRMGKTAVSRELNVMGIAHSRLSDVSVLARLYA 874
+M++PTIDIKLELQMRG++HRDA EK +LARRL +AR S P AT PS+ R AKA MG+ + R L MGI S+L+D LARLYA
Sbjct: 82 IMTMPTIDIKLELQMRGIDHRDALEKQELARRLAQARASQAQPVSVATDPSIE------------------------------------------------------RAAAKAMEMGEGGLRRALRDMGIPFSQLADAPELARLYA 173 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.782.1 >prot_C-linearis_contig102.782.1 ID=prot_C-linearis_contig102.782.1|Name=mRNA_C-linearis_contig102.782.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=942bp MEACNGFVWTAWLALVTLQATFCGSFMVPPQATTARPKCKPGRYSGPPAQback to top mRNA from alignment at C-linearis_contig102:265409..269750- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig102.782.1 ID=mRNA_C-linearis_contig102.782.1|Name=mRNA_C-linearis_contig102.782.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4342bp|location=Sequence derived from alignment at C-linearis_contig102:265409..269750- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig102:265409..269750- >mRNA_C-linearis_contig102.782.1 ID=mRNA_C-linearis_contig102.782.1|Name=mRNA_C-linearis_contig102.782.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5652bp|location=Sequence derived from alignment at C-linearis_contig102:265409..269750- (Chordaria linearis ClinC8C monoicous)back to top |