mRNA_C-linearis_contig102.774.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig102.774.1 vs. uniprot
Match: A0A6H5KA59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA59_9PHAE) HSP 1 Score: 394 bits (1011), Expect = 1.610e-126 Identity = 202/359 (56.27%), Postives = 251/359 (69.92%), Query Frame = 3 Query: 852 VPLMDPESHTQLNLTAAKGSNLQELDLECARKHLEAIKDSVTTHEELHEFILMEGEELARELNLAGLENAPGLFGDVTQQCRVAFTNKNRLIFTQANHSAEVGQPMLPFLASLLSCCQDRWSRRKWTAYYAAINASEVLQVFVQQTLLTSYETSNCTCKDAWDLICCPVGGTMYSQKGMDGTTQTLGDHDPNSCMSKWDKTRYKRHALVIRYVDCASNAVVQTTAMALPSTPAPKLYEMARLIDASITMTMADWLKHKTLPTPLVSGPFQNAPPSPSLFRRASYKGLLFVLFVISLGFLALNAAAAVFMILAIFIALGGSYYSMSTPHN---NAARAVGVMSKTLLGTQGVGLGVYAIA 1919
+P +DP S L +T+ ++L+E D+ECA KHL+AIKDSVTTH++LHEF LM+GE++ L+LAGL +APGLF D+TQ+CRV FTNK RLIFTQANHSA VG P + LASLL+CC DRWSRR WTAY A INASEVLQVFV Q L TSY+TS CT D + +CCP GG+MYS+K +DG TQTLGDHDP CMS+WDKTR+ RHALVIRYVDCAS++V++T AMA PS PA +LYEMAR I+A+IT+ M DW K K+LPT L + F N+ P A++ AAVFM+ A+ +AL G+Y T NA + +SK LG+ G G GVYAI+
Sbjct: 1 MPQIDPSSRKMLQMTSGVAADLEEWDIECATKHLDAIKDSVTTHDDLHEFTLMKGEKVVNALDLAGLVDAPGLFDDLTQRCRVVFTNKKRLIFTQANHSAVVGLPKMRCLASLLTCCHDRWSRRTWTAYCATINASEVLQVFVHQELSTSYQTSTCTFNDILEFLCCPTGGSMYSEKDIDGVTQTLGDHDPGDCMSRWDKTRFMRHALVIRYVDCASHSVLETRAMAHPSVPASQLYEMARSIEANITVRMTDWTKSKSLPTALDASRFDNSSPXXXXXXXXXXXXXXXXXXXXXXXXXAVDTTAAVFMVFAVLVALYGAYSGSRTQRRRIRNAGWWIFNVSKKTLGSNGAGAGVYAIS 359
BLAST of mRNA_C-linearis_contig102.774.1 vs. uniprot
Match: D7FH32_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH32_ECTSI) HSP 1 Score: 393 bits (1009), Expect = 6.970e-125 Identity = 207/396 (52.27%), Postives = 262/396 (66.16%), Query Frame = 3 Query: 747 EVYLCTDEYPFTSKQYDREKEHLLGQDPNATIDEKVPLMDPESHTQLNLTAAKGSNLQELDLECARKHLEAIKDSVTTHEELHEFILMEGEELARELNLAGLENAPGLFGDVTQQCRVAFTNKNRLIFTQANHSAEVGQPMLPFLASLLSCCQDRWSRRKWTAYYAAINASEVLQVFVQQTLLTSYETSNCTCKDAWDLICCPVGGTMYSQKGMDGTTQTLGDHDPNSCMSKWDKTRYKRHALVIRYVDCASNAVVQTTAMALPSTPAPKLYEMARLIDASITMTMADWLKHKTLPTPLVSGPFQNAPPSPSLFRRASYKGLLFVLFVISLGFLALNAAAAVFMILAIFIALGGSYYSMSTPHNNAARA----VGVMSKTLLGTQGVGLGVYAIAF 1922
E Y TD YPFT+ Q+DRE+E+LLG + +D K+ +DP S L +T+ ++L++ D+ECARKHL+AIKDSVTTH++LH+F M+GE++ L+LAGLE APG+F +VTQ+CRV FTNK RLIFTQ VLQVFVQQ L TSY+TS CT D D +CCP GGTMYS+K + G TQTLGDHDP CMS+WDKTR+ RHALVIRYVDCASN+V +TTAMA PS PA +LYEMAR I+A+IT+ ADW+K K+LPT L +G F N+PPSP LF+R SYKGL+F+L ++SL F A+N AAVFM L++ AL G+Y T A + SK LG+ G G GVYA++F
Sbjct: 100 EAYFFTDVYPFTAAQFDRERENLLGH--HTGLDPKMAQIDPSSRKMLQMTSGVAADLEKWDIECARKHLDAIKDSVTTHDDLHQFTFMKGEKVVNALDLAGLEEAPGVFDEVTQRCRVVFTNKKRLIFTQ------------------------------------------VLQVFVQQKLTTSYQTSTCTFNDILDFLCCPTGGTMYSEKNIHGVTQTLGDHDPGDCMSRWDKTRHMRHALVIRYVDCASNSVKETTAMAHPSIPASQLYEMARSIEANITIRTADWMKCKSLPTALNAGSFNNSPPSPPLFKRKSYKGLMFLLLIVSLIFFAVNPTAAVFMFLSVLAALFGAYSGSKTQQKRVRNAGSWILNAASKRTLGSNGAGAGVYALSF 451
BLAST of mRNA_C-linearis_contig102.774.1 vs. uniprot
Match: D7FWP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWP8_ECTSI) HSP 1 Score: 367 bits (942), Expect = 6.360e-117 Identity = 183/310 (59.03%), Postives = 231/310 (74.52%), Query Frame = 3 Query: 1008 MEGEELARELNLAGLENAPGLFGDVTQQCRVAFTNKNRLIFTQANHSAEVGQPMLPFLASLLSCCQDRWSRRKWTAYYAAINASEVLQVFVQQTLLTSYETSNCTCKDAWDLICCPVGGTMYSQKGMDGTTQTLGDHDPNSCMSKWDKTRYKRHALVIRYVDCASNAVVQTTAMALPSTPAPKLYEMARLIDASITMTMADWLKHKTLPTPLVSGPFQNAPPSPSLFRRASYKGLLFVLFVISLGFLALNAAAAVFMILAIFIALGGSYYSMSTPHNNAARAVGVM-----SKTLLGTQGVGLGVYAIAF 1922
M+GE L+LAG+E+APGL+ VTQQCRV FTN+ RL+FTQANHSAEVG P + LASLL+C DRWSRRKWT+YYA+I ASEVLQVFVQQTL TSY+TS CT D D++CCP GGT+ S+K ++G TQTLGDHDP SCM++WDKTR+ RHALVIRY+DCASN+V +TT MAL STPA KLYEMAR ID +IT+ +WL HK+LP PL + PF+N P +L ++ YK L+F+L V+SL F A+N AAVFM++A+F A+ G+Y +P A ++ G SKT + T GL VY ++F
Sbjct: 1 MKGEHAVNVLDLAGMEDAPGLYDTVTQQCRVVFTNEKRLVFTQANHSAEVGLPKMNCLASLLTCFHDRWSRRKWTSYYASIKASEVLQVFVQQTLTTSYQTSTCTFTDFLDVLCCPTGGTLKSEKDINGVTQTLGDHDPGSCMTRWDKTRFMRHALVIRYLDCASNSVQETTLMALASTPASKLYEMARAIDTNITIKANNWLSHKSLPNPLAAQPFRNQTPPQALIKQKPYKILVFILLVVSLIFFAINPTAAVFMLIAVFAAVFGAYSGSKSPVMRARKSAGFGMFGSGSKTTVSTNAFGLAVYLLSF 310 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.774.1 >prot_C-linearis_contig102.774.1 ID=prot_C-linearis_contig102.774.1|Name=mRNA_C-linearis_contig102.774.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=608bp MSDSSESSSTSTSSTIDLISGIHDSSDGHQGGRDIISLKNGRASSDHQQSback to top mRNA from alignment at C-linearis_contig102:193588..200342+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig102.774.1 ID=mRNA_C-linearis_contig102.774.1|Name=mRNA_C-linearis_contig102.774.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6755bp|location=Sequence derived from alignment at C-linearis_contig102:193588..200342+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig102:193588..200342+ >mRNA_C-linearis_contig102.774.1 ID=mRNA_C-linearis_contig102.774.1|Name=mRNA_C-linearis_contig102.774.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3648bp|location=Sequence derived from alignment at C-linearis_contig102:193588..200342+ (Chordaria linearis ClinC8C monoicous)back to top |