mRNA_C-linearis_contig102.773.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig102.773.1 vs. uniprot
Match: A0A6H5KA59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA59_9PHAE) HSP 1 Score: 375 bits (962), Expect = 6.130e-117 Identity = 175/271 (64.58%), Postives = 215/271 (79.34%), Query Frame = 3 Query: 801 LPQMDENSGKQIQLPTGVAITLQNWDVECAEKHIGAIKDSVASHDDLCSFTFMEGEEPVKVLDLAGLENAPGLFEDVSQRCRVAFTNKNRLVFTQAKHSAEVGMPKMRFPMSLCACFQDLWSRRKWSSFYAAINATEVLQVFVQQTLTTSYQTSHCTFNDVFDVLCCPMGGNMYSEKDLIHSTQTLGDHDPGSCMSKWDKTRFMRHALVIRYVDCSSNTVMQTVAMAHPATPASNIFKMAGLIESNITIRTADWLKGKHLPTPLAPAAFDN 1613
+PQ+D +S K +Q+ +GVA L+ WD+ECA KH+ AIKDSV +HDDL FT M+GE+ V LDLAGL +APGLF+D++QRCRV FTNK RL+FTQA HSA VG+PKMR SL C D WSRR W+++ A INA+EVLQVFV Q L+TSYQTS CTFND+ + LCCP GG+MYSEKD+ TQTLGDHDPG CMS+WDKTRFMRHALVIRYVDC+S++V++T AMAHP+ PAS +++MA IE+NIT+R DW K K LPT L + FDN
Sbjct: 1 MPQIDPSSRKMLQMTSGVAADLEEWDIECATKHLDAIKDSVTTHDDLHEFTLMKGEKVVNALDLAGLVDAPGLFDDLTQRCRVVFTNKKRLIFTQANHSAVVGLPKMRCLASLLTCCHDRWSRRTWTAYCATINASEVLQVFVHQELSTSYQTSTCTFNDILEFLCCPTGGSMYSEKDIDGVTQTLGDHDPGDCMSRWDKTRFMRHALVIRYVDCASHSVLETRAMAHPSVPASQLYEMARSIEANITVRMTDWTKSKSLPTALDASRFDN 271
BLAST of mRNA_C-linearis_contig102.773.1 vs. uniprot
Match: D7FH32_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH32_ECTSI) HSP 1 Score: 334 bits (856), Expect = 2.960e-100 Identity = 174/311 (55.95%), Postives = 210/311 (67.52%), Query Frame = 3 Query: 687 DPVYLVTDTYPYTYKQFDRQEEDRLLGVDISGLVYKKELPQMDENSGKQIQLPTGVAITLQNWDVECAEKHIGAIKDSVASHDDLCSFTFMEGEEPVKVLDLAGLENAPGLFEDVSQRCRVAFTNKNRLVFTQAKHSAEVGMPKMRFPMSLCACFQDLWSRRKWSSFYAAINATEVLQVFVQQTLTTSYQTSHCTFNDVFDVLCCPMGGNMYSEKDLIHSTQTLGDHDPGSCMSKWDKTRFMRHALVIRYVDCSSNTVMQTVAMAHPATPASNIFKMAGLIESNITIRTADWLKGKHLPTPLAPAAFDNEP 1619
D Y TD YP+T QFDR+ E+ LLG +GL K + Q+D +S K +Q+ +GVA L+ WD+ECA KH+ AIKDSV +HDDL FTFM+GE+ V LDLAGLE APG+F++V+QRCRV FTNK RL+FTQ VLQVFVQQ LTTSYQTS CTFND+ D LCCP GG MYSEK++ TQTLGDHDPG CMS+WDKTR MRHALVIRYVDC+SN+V +T AMAHP+ PAS +++MA IE+NITIRTADW+K K LPT L +F+N P
Sbjct: 99 DEAYFFTDVYPFTAAQFDREREN-LLGHH-TGLDPK--MAQIDPSSRKMLQMTSGVAADLEKWDIECARKHLDAIKDSVTTHDDLHQFTFMKGEKVVNALDLAGLEEAPGVFDEVTQRCRVVFTNKKRLIFTQ------------------------------------------VLQVFVQQKLTTSYQTSTCTFNDILDFLCCPTGGTMYSEKNIHGVTQTLGDHDPGDCMSRWDKTRHMRHALVIRYVDCASNSVKETTAMAHPSIPASQLYEMARSIEANITIRTADWMKCKSLPTALNAGSFNNSP 363
BLAST of mRNA_C-linearis_contig102.773.1 vs. uniprot
Match: D7FWP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWP8_ECTSI) HSP 1 Score: 308 bits (790), Expect = 1.150e-92 Identity = 146/220 (66.36%), Postives = 176/220 (80.00%), Query Frame = 3 Query: 957 MEGEEPVKVLDLAGLENAPGLFEDVSQRCRVAFTNKNRLVFTQAKHSAEVGMPKMRFPMSLCACFQDLWSRRKWSSFYAAINATEVLQVFVQQTLTTSYQTSHCTFNDVFDVLCCPMGGNMYSEKDLIHSTQTLGDHDPGSCMSKWDKTRFMRHALVIRYVDCSSNTVMQTVAMAHPATPASNIFKMAGLIESNITIRTADWLKGKHLPTPLAPAAFDNE 1616
M+GE V VLDLAG+E+APGL++ V+Q+CRV FTN+ RLVFTQA HSAEVG+PKM SL CF D WSRRKW+S+YA+I A+EVLQVFVQQTLTTSYQTS CTF D DVLCCP GG + SEKD+ TQTLGDHDPGSCM++WDKTRFMRHALVIRY+DC+SN+V +T MA +TPAS +++MA I++NITI+ +WL K LP PLA F N+
Sbjct: 1 MKGEHAVNVLDLAGMEDAPGLYDTVTQQCRVVFTNEKRLVFTQANHSAEVGLPKMNCLASLLTCFHDRWSRRKWTSYYASIKASEVLQVFVQQTLTTSYQTSTCTFTDFLDVLCCPTGGTLKSEKDINGVTQTLGDHDPGSCMTRWDKTRFMRHALVIRYLDCASNSVQETTLMALASTPASKLYEMARAIDTNITIKANNWLSHKSLPNPLAAQPFRNQ 220 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.773.1 >prot_C-linearis_contig102.773.1 ID=prot_C-linearis_contig102.773.1|Name=mRNA_C-linearis_contig102.773.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=568bp MPGGERRRSSREGHGTDRTPRSTSSSGRDGGRERTGRNIISNDSVRGSHGback to top mRNA from alignment at C-linearis_contig102:181926..192552- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig102.773.1 ID=mRNA_C-linearis_contig102.773.1|Name=mRNA_C-linearis_contig102.773.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=10627bp|location=Sequence derived from alignment at C-linearis_contig102:181926..192552- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig102:181926..192552- >mRNA_C-linearis_contig102.773.1 ID=mRNA_C-linearis_contig102.773.1|Name=mRNA_C-linearis_contig102.773.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3408bp|location=Sequence derived from alignment at C-linearis_contig102:181926..192552- (Chordaria linearis ClinC8C monoicous)back to top |