mRNA_C-linearis_contig102.772.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_C-linearis_contig102.772.1 vs. uniprot
Match: D7G1C2_ECTSI (Iron-sulfur cluster assembly protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C2_ECTSI) HSP 1 Score: 272 bits (695), Expect = 1.930e-84 Identity = 136/149 (91.28%), Postives = 141/149 (94.63%), Query Frame = 3 Query: 264 VRRSGAPALCQRRSYHDNIVEHYENPRNVGSLDKNNEFVGTGLVGAPACGDVMKLQIKVDKNGVITESKFKTFGCGSAIASSSVATEWLKGRSVDESLKIKNTDIAGHLKLPPVKLHCSMLAEDAIKAAIKDLQDKGTVPKPAQHAEAA 710
+RRSGA QRRSYHDNIVEHYENPRNVGS+DK ++FVGTGLVGAPACGDVMKLQIKVD+NGVITESKFKTFGCGSAIASSSVATEWLKGRSVDESLKIKNTDIAGHLKLPPVKLHCSMLAEDAIKAAIKDLQDKG V KPAQHA AA
Sbjct: 1 MRRSGAAVAHQRRSYHDNIVEHYENPRNVGSMDKKDKFVGTGLVGAPACGDVMKLQIKVDENGVITESKFKTFGCGSAIASSSVATEWLKGRSVDESLKIKNTDIAGHLKLPPVKLHCSMLAEDAIKAAIKDLQDKGAVAKPAQHALAA 149
BLAST of mRNA_C-linearis_contig102.772.1 vs. uniprot
Match: A0A1Z5JMQ2_FISSO (Iron-sulfur cluster assembly protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JMQ2_FISSO) HSP 1 Score: 226 bits (575), Expect = 1.520e-66 Identity = 110/131 (83.97%), Postives = 121/131 (92.37%), Query Frame = 3 Query: 279 APALCQRRSYHDNIVEHYENPRNVGSLDKNNEFVGTGLVGAPACGDVMKLQIKVDKNGVITESKFKTFGCGSAIASSSVATEWLKGRSVDESLKIKNTDIAGHLKLPPVKLHCSMLAEDAIKAAIKDLQDK 671
A A RR YH+NIVEHYENPRNVGSLDKN++ VGTGLVGAPACGDVMKLQIKVD+NG+ITESKFKTFGCGSAIASSSVATEW+KG+SVDE L IKN+DIA HLKLPPVKLHCSMLAEDAIKAA+KD ++K
Sbjct: 21 AAARLIRRGYHENIVEHYENPRNVGSLDKNDKSVGTGLVGAPACGDVMKLQIKVDENGIITESKFKTFGCGSAIASSSVATEWVKGKSVDEVLSIKNSDIASHLKLPPVKLHCSMLAEDAIKAAVKDWKEK 151
BLAST of mRNA_C-linearis_contig102.772.1 vs. uniprot
Match: A0A7S3PWM6_9STRA (Iron-sulfur cluster assembly protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PWM6_9STRA) HSP 1 Score: 226 bits (577), Expect = 1.780e-66 Identity = 118/179 (65.92%), Postives = 136/179 (75.98%), Query Frame = 3 Query: 162 HPLTLPVLYSV--DFSATMNTMQNVARKSLGGSLSTVRRSGAPALCQRRSYHDNIVEHYENPRNVGSLDKNNEFVGTGLVGAPACGDVMKLQIKVDKNGVITESKFKTFGCGSAIASSSVATEWLKGRSVDESLKIKNTDIAGHLKLPPVKLHCSMLAEDAIKAAIKDLQDKGTVPKPA 692
HP T Y+ FS N +Q ++R S R+ +L Q+R YHD+IVEHYENPRNVGSL+K++ VGTGLVGAPACGDVMKLQIKVD NG I ESKFKTFGCGSAIASSSVATEW+KG++VDE L IKN+DIAGHLKLPPVKLHCSMLAEDAI+AA+ DL+ K K A
Sbjct: 14 HPTTANPSYTPRHQFSMLSNAVQRLSRSVSRSSRVITSRASPASLVQKRGYHDSIVEHYENPRNVGSLNKDDSNVGTGLVGAPACGDVMKLQIKVDDNGQIIESKFKTFGCGSAIASSSVATEWVKGKTVDEVLAIKNSDIAGHLKLPPVKLHCSMLAEDAIRAAVSDLKSKQQKKKAA 192
BLAST of mRNA_C-linearis_contig102.772.1 vs. uniprot
Match: A0A6U3XMM0_9STRA (Iron-sulfur cluster assembly protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3XMM0_9STRA) HSP 1 Score: 222 bits (565), Expect = 3.330e-65 Identity = 106/136 (77.94%), Postives = 122/136 (89.71%), Query Frame = 3 Query: 264 VRRSGAPALCQRRSYHDNIVEHYENPRNVGSLDKNNEFVGTGLVGAPACGDVMKLQIKVDKNGVITESKFKTFGCGSAIASSSVATEWLKGRSVDESLKIKNTDIAGHLKLPPVKLHCSMLAEDAIKAAIKDLQDK 671
V +G + R+YHDNIVEHYENPRNVGSLDKN+E+VGTGLVGAPACGDVMKLQI+VD+NGVITESKFKTFGCGSAIASSSV TEW++G+++DE++ IKN DIAG LKLPPVKLHCSMLAEDAIKAA+KD + K
Sbjct: 19 VNAAGRTSAGSARTYHDNIVEHYENPRNVGSLDKNSEYVGTGLVGAPACGDVMKLQIRVDENGVITESKFKTFGCGSAIASSSVMTEWVEGKTIDEAMAIKNKDIAGFLKLPPVKLHCSMLAEDAIKAAVKDYKSK 154
BLAST of mRNA_C-linearis_contig102.772.1 vs. uniprot
Match: A0A5D6XWY5_9STRA (Iron-sulfur cluster assembly protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWY5_9STRA) HSP 1 Score: 221 bits (564), Expect = 4.810e-65 Identity = 109/150 (72.67%), Postives = 126/150 (84.00%), Query Frame = 3 Query: 222 QNVARKSLGGSLSTVRRSGAPALCQRRSYHDNIVEHYENPRNVGSLDKNNEFVGTGLVGAPACGDVMKLQIKVDKNGVITESKFKTFGCGSAIASSSVATEWLKGRSVDESLKIKNTDIAGHLKLPPVKLHCSMLAEDAIKAAIKDLQDK 671
++V ++SL +LST A Q R YHDN+++HYENPRNVGS+DK+ VGTGLVGAPACGDVMKLQI+VD+NG I +SKFKTFGCGSAIASSSVATEWLKG++V+E L+IKNTDIA HLKLPPVKLHCSMLAEDAIKAAI D Q K
Sbjct: 4 RSVLKRSLASALSTRPAVAAAPALQMRRYHDNVIDHYENPRNVGSMDKSARNVGTGLVGAPACGDVMKLQIEVDENGTIVDSKFKTFGCGSAIASSSVATEWLKGKTVEECLQIKNTDIASHLKLPPVKLHCSMLAEDAIKAAISDYQKK 153
BLAST of mRNA_C-linearis_contig102.772.1 vs. uniprot
Match: G4YNR1_PHYSP (Iron-sulfur cluster assembly protein n=21 Tax=Peronosporaceae TaxID=4777 RepID=G4YNR1_PHYSP) HSP 1 Score: 220 bits (560), Expect = 1.780e-64 Identity = 108/151 (71.52%), Postives = 129/151 (85.43%), Query Frame = 3 Query: 222 QNVARKSLGGSLSTVRRSGAPALCQR-RSYHDNIVEHYENPRNVGSLDKNNEFVGTGLVGAPACGDVMKLQIKVDKNGVITESKFKTFGCGSAIASSSVATEWLKGRSVDESLKIKNTDIAGHLKLPPVKLHCSMLAEDAIKAAIKDLQDK 671
++ ++SLG + + + APA Q+ R YH+N+++HYENPRNVG++DKN + VGTGLVGAPACGDVMKLQI+VD+NG I +SKFKTFGCGSAIASSSVATEWLKG+SV+E LKIKNTDIA HLKLPPVKLHCSMLAEDAIKAAI D + K
Sbjct: 4 RSALKRSLGAFSAARKAAPAPAFAQQTRMYHENVIDHYENPRNVGAMDKNAKDVGTGLVGAPACGDVMKLQIQVDENGTIVDSKFKTFGCGSAIASSSVATEWLKGKSVEECLKIKNTDIASHLKLPPVKLHCSMLAEDAIKAAISDYKRK 154
BLAST of mRNA_C-linearis_contig102.772.1 vs. uniprot
Match: A0A8K1CUK2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUK2_PYTOL) HSP 1 Score: 219 bits (559), Expect = 2.930e-64 Identity = 113/163 (69.33%), Postives = 129/163 (79.14%), Query Frame = 3 Query: 228 VARKSLGGSLSTV--------RRSGAPALCQRRSYHDNIVEHYENPRNVGSLDKNNEFVGTGLVGAPACGDVMKLQIKVDKNGVITESKFKTFGCGSAIASSSVATEWLKGRSVDESLKIKNTDIAGHLKLPPVKLHCSMLAEDAIKAAIKDLQDKGTVPKPA 692
+AR +L SL++ R + A AL Q R YH+N+++HYENPRNVGSLDKN VGTGLVGAPACGDVMKLQI+VD+NG I ESKFKTFGCGSAIASSSVATEWLKG++++E L IKNTDIA HLKLPPVKLHCSMLAEDAIKAAI D + K T A
Sbjct: 2 IARSALKRSLTSALSAKGAVSRLAPASALGQARMYHENVIDHYENPRNVGSLDKNATDVGTGLVGAPACGDVMKLQIRVDENGTIIESKFKTFGCGSAIASSSVATEWLKGKTIEECLNIKNTDIASHLKLPPVKLHCSMLAEDAIKAAISDYKTKQTAKSSA 164
BLAST of mRNA_C-linearis_contig102.772.1 vs. uniprot
Match: A0A6G0XIV5_9STRA (Iron-sulfur cluster assembly protein n=2 Tax=Eukaryota TaxID=2759 RepID=A0A6G0XIV5_9STRA) HSP 1 Score: 218 bits (556), Expect = 5.560e-64 Identity = 106/139 (76.26%), Postives = 121/139 (87.05%), Query Frame = 3 Query: 255 LSTVRRSGAPALCQRRSYHDNIVEHYENPRNVGSLDKNNEFVGTGLVGAPACGDVMKLQIKVDKNGVITESKFKTFGCGSAIASSSVATEWLKGRSVDESLKIKNTDIAGHLKLPPVKLHCSMLAEDAIKAAIKDLQDK 671
L VRR+ P+ R YH+NI++HYENPRNVGSLDK + VGTGLVGAPACGDVMKLQI+VD+NG I +SKFKTFGCGSAIASSSVATEWLKG++VD+ L IKNTDIA HLKLPPVKLHCSMLAEDAIKAA++D +DK
Sbjct: 8 LRVVRRALTPSRVAVRMYHENIIDHYENPRNVGSLDKKSASVGTGLVGAPACGDVMKLQIEVDENGTIIDSKFKTFGCGSAIASSSVATEWLKGKNVDDCLSIKNTDIANHLKLPPVKLHCSMLAEDAIKAAVQDYKDK 146
BLAST of mRNA_C-linearis_contig102.772.1 vs. uniprot
Match: A0A7R9U6U0_9STRA (Iron-sulfur cluster assembly protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6U0_9STRA) HSP 1 Score: 218 bits (555), Expect = 9.470e-64 Identity = 105/125 (84.00%), Postives = 116/125 (92.80%), Query Frame = 3 Query: 297 RRSYHDNIVEHYENPRNVGSLDKNNEFVGTGLVGAPACGDVMKLQIKVDKNGVITESKFKTFGCGSAIASSSVATEWLKGRSVDESLKIKNTDIAGHLKLPPVKLHCSMLAEDAIKAAIKDLQDK 671
RRSYH N+V+HYENPRNVGSLD +E VGTGLVGAPACGDVMKLQIKVD+NGV+TESKFKTFGCGSAIASSSVATEW++GR+VDE L IKNTDIA HLKLPPVKLHCSMLAEDAIKAA++D + K
Sbjct: 32 RRSYHANVVDHYENPRNVGSLDAKDESVGTGLVGAPACGDVMKLQIKVDENGVVTESKFKTFGCGSAIASSSVATEWMQGRTVDEVLAIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVQDWKSK 156
BLAST of mRNA_C-linearis_contig102.772.1 vs. uniprot
Match: A0A448Z7H0_9STRA (Iron-sulfur cluster assembly protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z7H0_9STRA) HSP 1 Score: 218 bits (555), Expect = 1.010e-63 Identity = 106/139 (76.26%), Postives = 120/139 (86.33%), Query Frame = 3 Query: 276 GAPALCQRRSYHDNIVEHYENPRNVGSLDKNNEFVGTGLVGAPACGDVMKLQIKVDKNGVITESKFKTFGCGSAIASSSVATEWLKGRSVDESLKIKNTDIAGHLKLPPVKLHCSMLAEDAIKAAIKDLQDKGTVPKPA 692
G L +RSYH+NIVEHYENPRNVGS+DKN E VGTGLVGAPACGDVMKLQI+VD +G I ESKFKTFGCGSAIA+SSVATEW+KG++VDE+L +KN+DIA HLKLPPVKLHCSMLAEDAIKAA+KD + K K A
Sbjct: 21 GGSTLVNKRSYHENIVEHYENPRNVGSMDKNEESVGTGLVGAPACGDVMKLQIRVDDDGNIVESKFKTFGCGSAIAASSVATEWVKGKNVDEALAVKNSDIAAHLKLPPVKLHCSMLAEDAIKAAVKDWKAKQDDKKTA 159 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.772.1 >prot_C-linearis_contig102.772.1 ID=prot_C-linearis_contig102.772.1|Name=mRNA_C-linearis_contig102.772.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=168bp MNTMQNVARKSLGGSLSTVRRSGAPALCQRRSYHDNIVEHYENPRNVGSLback to top mRNA from alignment at C-linearis_contig102:175553..178918- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig102.772.1 ID=mRNA_C-linearis_contig102.772.1|Name=mRNA_C-linearis_contig102.772.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3366bp|location=Sequence derived from alignment at C-linearis_contig102:175553..178918- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig102:175553..178918- >mRNA_C-linearis_contig102.772.1 ID=mRNA_C-linearis_contig102.772.1|Name=mRNA_C-linearis_contig102.772.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1008bp|location=Sequence derived from alignment at C-linearis_contig102:175553..178918- (Chordaria linearis ClinC8C monoicous)back to top |