mRNA_C-linearis_contig102.766.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig102.766.1
Unique NamemRNA_C-linearis_contig102.766.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig102contigC-linearis_contig102:9686..10239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size535
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig102.766.1prot_C-linearis_contig102.766.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig102 9686..10055 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927367.2693665-CDS-C-linearis_contig102:9685..99351622927367.2693665-CDS-C-linearis_contig102:9685..9935Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 9686..9935 +
1690879656.9648602-CDS-C-linearis_contig102:9685..99351690879656.9648602-CDS-C-linearis_contig102:9685..9935Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 9686..9935 +
1622927367.280476-CDS-C-linearis_contig102:9954..100551622927367.280476-CDS-C-linearis_contig102:9954..10055Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 9955..10055 +
1690879656.9754598-CDS-C-linearis_contig102:9954..100551690879656.9754598-CDS-C-linearis_contig102:9954..10055Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 9955..10055 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927367.2896414-UTR-C-linearis_contig102:10055..102391622927367.2896414-UTR-C-linearis_contig102:10055..10239Chordaria linearis ClinC8C monoicousUTRC-linearis_contig102 10056..10239 +
1690879656.9853616-UTR-C-linearis_contig102:10055..102391690879656.9853616-UTR-C-linearis_contig102:10055..10239Chordaria linearis ClinC8C monoicousUTRC-linearis_contig102 10056..10239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig102.766.1

>prot_C-linearis_contig102.766.1 ID=prot_C-linearis_contig102.766.1|Name=mRNA_C-linearis_contig102.766.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=117bp
MCPPCTNVYHEIKNPKGKRQTQNWPRTSTVSLPRCHQYCLSLFLQNSNQT
PPFSYSERNLRDTCVAARSSRSQVTYCRSPKRPSSGSPTLRTISGPNTNA
LYVCHAGTIGEYLVID*
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mRNA from alignment at C-linearis_contig102:9686..10239+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig102.766.1 ID=mRNA_C-linearis_contig102.766.1|Name=mRNA_C-linearis_contig102.766.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=554bp|location=Sequence derived from alignment at C-linearis_contig102:9686..10239+ (Chordaria linearis ClinC8C monoicous)
ATGTGCCCTCCATGCACGAACGTTTATCATGAAATTAAAAACCCAAAAGG
AAAGCGACAGACACAAAACTGGCCGCGCACATCTACCGTATCTCTGCCTC
GCTGTCACCAATACTGTCTTTCTCTTTTCCTCCAGAACAGCAACCAGACC
CCTCCCTTTTCCTACAGTGAAAGGAACCTACGTGATACATGCGTTGCTGC
GCGCAGCAGCCGGTCTCAGGTGACGTATTGTAGGTCCCCAAAACGACCAT
CCACCATTTTCTCCGCCAACGTCGGGGTCACCAACACTTCGTACTATTTC
AGGACCAAACACAAATGCTCTGTATGTGTGCCACGCCGGAACTATCGGCG
AATATCTCGTCATAGACTGAGCACGGTTTCAGCCCCCAAAACAGTCCCAC
CAACGACAACTGCGAGCACCAGCTCCATCAGATGAGATTGAAGCTGCCCG
AACGCAATATATCTGCTTCCAGGACCGTAAACCCAACTGCTGGGACCCCT
TGGGAATCTACGAAGTACGTAGGTGTTGGCATTTTACTTCACGCGCTCTA
TATG
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Coding sequence (CDS) from alignment at C-linearis_contig102:9686..10239+

>mRNA_C-linearis_contig102.766.1 ID=mRNA_C-linearis_contig102.766.1|Name=mRNA_C-linearis_contig102.766.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at C-linearis_contig102:9686..10239+ (Chordaria linearis ClinC8C monoicous)
ATGTGCCCTCCATGCACGAACGTTTATCATGAAATTAAAAACCCAAAAGG
AAAGCGACAGACACAAAACTGGCCGCGCACATCTACCGTATCTCTGCCTC
GCTGTCACCAATACTGTCTTTCTCTTTTCCTCCAGAACAGCAACCAGACC
CCTCCCTTTTCCTACAGTGAAAGGAACCTACGTGATACATGCGTTGCTGC
GCGCAGCAGCCGGTCTCAGGTGACGTATTGTAGGTCCCCAAAACGACCAT
ATGTGCCCTCCATGCACGAACGTTTATCATGAAATTAAAAACCCAAAAGG
AAAGCGACAGACACAAAACTGGCCGCGCACATCTACCGTATCTCTGCCTC
GCTGTCACCAATACTGTCTTTCTCTTTTCCTCCAGAACAGCAACCAGACC
CCTCCCTTTTCCTACAGTGAAAGGAACCTACGTGATACATGCGTTGCTGC
GCGCAGCAGCCGGTCTCAGGTGACGTATTGTAGGTCCCCAAAACGACCAT
CGTCGGGGTCACCAACACTTCGTACTATTTCAGGACCAAACACAAATGCT
CTGTATGTGTGCCACGCCGGAACTATCGGCGAATATCTCGTCATAGACTG
ACGTCGGGGTCACCAACACTTCGTACTATTTCAGGACCAAACACAAATGC
TCTGTATGTGTGCCACGCCGGAACTATCGGCGAATATCTCGTCATAGACT
GA
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