Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 535 |
| Cds size | 351 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927367.2693665-CDS-C-linearis_contig102:9685..9935 | 1622927367.2693665-CDS-C-linearis_contig102:9685..9935 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig102 9686..9935 + |
| 1690879656.9648602-CDS-C-linearis_contig102:9685..9935 | 1690879656.9648602-CDS-C-linearis_contig102:9685..9935 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig102 9686..9935 + |
| 1622927367.280476-CDS-C-linearis_contig102:9954..10055 | 1622927367.280476-CDS-C-linearis_contig102:9954..10055 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig102 9955..10055 + |
| 1690879656.9754598-CDS-C-linearis_contig102:9954..10055 | 1690879656.9754598-CDS-C-linearis_contig102:9954..10055 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig102 9955..10055 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927367.2896414-UTR-C-linearis_contig102:10055..10239 | 1622927367.2896414-UTR-C-linearis_contig102:10055..10239 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig102 10056..10239 + |
| 1690879656.9853616-UTR-C-linearis_contig102:10055..10239 | 1690879656.9853616-UTR-C-linearis_contig102:10055..10239 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig102 10056..10239 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.766.1 >prot_C-linearis_contig102.766.1 ID=prot_C-linearis_contig102.766.1|Name=mRNA_C-linearis_contig102.766.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=117bp
MCPPCTNVYHEIKNPKGKRQTQNWPRTSTVSLPRCHQYCLSLFLQNSNQT
PPFSYSERNLRDTCVAARSSRSQVTYCRSPKRPSSGSPTLRTISGPNTNA
LYVCHAGTIGEYLVID* back to topmRNA from alignment at C-linearis_contig102:9686..10239+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig102.766.1 ID=mRNA_C-linearis_contig102.766.1|Name=mRNA_C-linearis_contig102.766.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=554bp|location=Sequence derived from alignment at C-linearis_contig102:9686..10239+ (Chordaria linearis ClinC8C monoicous)
ATGTGCCCTCCATGCACGAACGTTTATCATGAAATTAAAAACCCAAAAGG
AAAGCGACAGACACAAAACTGGCCGCGCACATCTACCGTATCTCTGCCTC
GCTGTCACCAATACTGTCTTTCTCTTTTCCTCCAGAACAGCAACCAGACC
CCTCCCTTTTCCTACAGTGAAAGGAACCTACGTGATACATGCGTTGCTGC
GCGCAGCAGCCGGTCTCAGGTGACGTATTGTAGGTCCCCAAAACGACCAT
CCACCATTTTCTCCGCCAACGTCGGGGTCACCAACACTTCGTACTATTTC
AGGACCAAACACAAATGCTCTGTATGTGTGCCACGCCGGAACTATCGGCG
AATATCTCGTCATAGACTGAGCACGGTTTCAGCCCCCAAAACAGTCCCAC
CAACGACAACTGCGAGCACCAGCTCCATCAGATGAGATTGAAGCTGCCCG
AACGCAATATATCTGCTTCCAGGACCGTAAACCCAACTGCTGGGACCCCT
TGGGAATCTACGAAGTACGTAGGTGTTGGCATTTTACTTCACGCGCTCTA
TATG back to topCoding sequence (CDS) from alignment at C-linearis_contig102:9686..10239+ >mRNA_C-linearis_contig102.766.1 ID=mRNA_C-linearis_contig102.766.1|Name=mRNA_C-linearis_contig102.766.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at C-linearis_contig102:9686..10239+ (Chordaria linearis ClinC8C monoicous)
ATGTGCCCTCCATGCACGAACGTTTATCATGAAATTAAAAACCCAAAAGG
AAAGCGACAGACACAAAACTGGCCGCGCACATCTACCGTATCTCTGCCTC
GCTGTCACCAATACTGTCTTTCTCTTTTCCTCCAGAACAGCAACCAGACC
CCTCCCTTTTCCTACAGTGAAAGGAACCTACGTGATACATGCGTTGCTGC
GCGCAGCAGCCGGTCTCAGGTGACGTATTGTAGGTCCCCAAAACGACCAT
ATGTGCCCTCCATGCACGAACGTTTATCATGAAATTAAAAACCCAAAAGG
AAAGCGACAGACACAAAACTGGCCGCGCACATCTACCGTATCTCTGCCTC
GCTGTCACCAATACTGTCTTTCTCTTTTCCTCCAGAACAGCAACCAGACC
CCTCCCTTTTCCTACAGTGAAAGGAACCTACGTGATACATGCGTTGCTGC
GCGCAGCAGCCGGTCTCAGGTGACGTATTGTAGGTCCCCAAAACGACCAT
CGTCGGGGTCACCAACACTTCGTACTATTTCAGGACCAAACACAAATGCT
CTGTATGTGTGCCACGCCGGAACTATCGGCGAATATCTCGTCATAGACTG
ACGTCGGGGTCACCAACACTTCGTACTATTTCAGGACCAAACACAAATGC
TCTGTATGTGTGCCACGCCGGAACTATCGGCGAATATCTCGTCATAGACT
GA back to top
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