mRNA_C-linearis_contig101.763.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig101.763.1 vs. uniprot
Match: D7FJK6_ECTSI (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJK6_ECTSI) HSP 1 Score: 280 bits (717), Expect = 6.810e-88 Identity = 133/171 (77.78%), Postives = 148/171 (86.55%), Query Frame = 1 Query: 1 DLPATQNTRVGGLGASNHEEMESDNMATPRAMAFRLCSHFVNSEGRANKPRFGFNGLGELVYQRTYARYLGDDTNEKEQWYQTIERVVNGTFSMQKEWMFSRGMPWNEEETQSTAQEMYRRMFAMKFLPPGRGLWAMGSKLTTERRLYAALNNCAFVSTQDLAEDPTAPFC 513 D A +N+R+GGLG SN E +S N A F+LCS FV+ EGR +KP+FGFNGLGELVYQRTYARYLG+DT+++EQWYQTIERVVNGTFSMQKEWM SRGM W+E+E QSTAQEMYRRMFA KFLPPGRGLWAMGSKLTTERRLYAALNNCAFVST+DLA DPTAPFC Sbjct: 12 DTAAARNSRIGGLGTSNDAEAKSSNTA------FQLCSQFVDREGRGSKPQFGFNGLGELVYQRTYARYLGEDTDDREQWYQTIERVVNGTFSMQKEWMLSRGMRWDEQEAQSTAQEMYRRMFAFKFLPPGRGLWAMGSKLTTERRLYAALNNCAFVSTRDLASDPTAPFC 176
BLAST of mRNA_C-linearis_contig101.763.1 vs. uniprot
Match: A0A835YMD1_9STRA (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMD1_9STRA) HSP 1 Score: 206 bits (523), Expect = 1.800e-59 Identity = 90/123 (73.17%), Postives = 110/123 (89.43%), Query Frame = 1 Query: 145 KPRFGFNGLGELVYQRTYARYLGDDTNEKEQWYQTIERVVNGTFSMQKEWMFSRGMPWNEEETQSTAQEMYRRMFAMKFLPPGRGLWAMGSKLTTERRLYAALNNCAFVSTQDLAEDPTAPFC 513 +P FGFNGLGELVY+RTY+RY+ +D++ KE+WYQT++RVVNGTFSMQKEW + G+PW+E+ Q+ AQ+MY R+F MKFLPPGRGLWAMGSKLTTERRL+AALNNCAFVST ++AEDPT PFC Sbjct: 35 RPPFGFNGLGELVYRRTYSRYVNEDSDVKEEWYQTVQRVVNGTFSMQKEWTLTGGLPWSEDAAQAEAQDMYTRIFNMKFLPPGRGLWAMGSKLTTERRLFAALNNCAFVSTANMAEDPTGPFC 157
BLAST of mRNA_C-linearis_contig101.763.1 vs. uniprot
Match: A0A3L6V3B6_9STRA (Ribonucleoside-triphosphate reductase (thioredoxin) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6V3B6_9STRA) HSP 1 Score: 188 bits (477), Expect = 2.100e-55 Identity = 100/171 (58.48%), Postives = 118/171 (69.01%), Query Frame = 1 Query: 28 VGGLGASNHEEMESD------NMATP-RAMAFRLCSHFVNSEGRANKPRFGFNGLGELVYQRTYARYLGDDTNEKEQWYQTIERVVNGTFSMQKEWMFSRGMPWNEEETQSTAQEMYRRMFAMKFLPPGRGLWAMGSKLTTERRLYAALNNCAFVSTQDLAE--DPTAPFC 513 V GL N +D N ATP R FRL + FV+S + P FGFNGLGELVY RTY+R D T KEQWY+T+ERVVNGT++MQK W+ RG+ WN E +A+EMYRR+FAMKFLPPGRGLWAMGS +T ER+LYAALNNCAFVST+D+ P PFC Sbjct: 24 VDGLSEDNSHGFANDFIPLFRNEATPKREKKFRLSNKFVDSF-KDVPPPFGFNGLGELVYMRTYSRDKADGT--KEQWYETVERVVNGTYNMQKHWLEHRGLGWNGREAHRSAREMYRRIFAMKFLPPGRGLWAMGSPITEERKLYAALNNCAFVSTEDVDRRFSPAEPFC 191
BLAST of mRNA_C-linearis_contig101.763.1 vs. uniprot
Match: A0A835ZHW0_9STRA (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHW0_9STRA) HSP 1 Score: 191 bits (486), Expect = 5.500e-54 Identity = 91/147 (61.90%), Postives = 110/147 (74.83%), Query Frame = 1 Query: 73 NMATPRAMAFRLCSHFVNSEGRANKPRFGFNGLGELVYQRTYARYLGDDTNEKEQWYQTIERVVNGTFSMQKEWMFSRGMPWNEEETQSTAQEMYRRMFAMKFLPPGRGLWAMGSKLTTERRLYAALNNCAFVSTQDLAEDPTAPFC 513 N + + +AF L FV +A P FGFNGLGE VY+RTY+RYL + +E W+QT++RVVNGTFSMQKEW+ + W+E Q AQEMY R+F MKFLPPGRGLWAMG+ LTT+RRLYAALNNCAFVST D+ +DPTAPFC Sbjct: 26 NSSGVKELAFALEPSFVAKWSKATPP-FGFNGLGEFVYRRTYSRYLHGGDDAREVWFQTVQRVVNGTFSMQKEWLITEHRCWDEAAAQRDAQEMYERIFNMKFLPPGRGLWAMGTALTTQRRLYAALNNCAFVSTADMQDDPTAPFC 171
BLAST of mRNA_C-linearis_contig101.763.1 vs. uniprot
Match: A0A7R9UQG7_DIALT (Ribonucleoside-triphosphate reductase (thioredoxin) (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UQG7_DIALT) HSP 1 Score: 176 bits (446), Expect = 2.210e-52 Identity = 86/142 (60.56%), Postives = 104/142 (73.24%), Query Frame = 1 Query: 85 PRAMAFRLCSHFVNSEGRANKPRFGFNGLGELVYQRTYARYLGDDTNEKEQWYQTIERVVNGTFSMQKEWMFSRGMPWNEEETQSTAQEMYRRMFAMKFLPPGRGLWAMGSKLTTERRLYAALNNCAFVSTQDLAEDPTAPF 510 P + FRL FV+S + +P FGFNGLG+LVY+RTYAR D +EQW +T+ERVVNGTF+MQK W+ + WNE E Q AQ+MY R+F MKFLPPGRGLWAMGS +T ERRL+AALNNCAFVST++L D PF Sbjct: 44 PGYVPFRLPDAFVDSYA-SREPAFGFNGLGKLVYERTYARPTAD--GGREQWLETVERVVNGTFNMQKRWIEESDLGWNEREAQEVAQDMYERIFTMKFLPPGRGLWAMGSPITEERRLFAALNNCAFVSTENLPTDFAGPF 182
BLAST of mRNA_C-linearis_contig101.763.1 vs. uniprot
Match: W7T512_9STRA (Ribonucleoside-triphosphate reductase (thioredoxin) n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T512_9STRA) HSP 1 Score: 185 bits (470), Expect = 2.210e-51 Identity = 88/137 (64.23%), Postives = 106/137 (77.37%), Query Frame = 1 Query: 100 FRLCSHFVNSEGRANKPRFGFNGLGELVYQRTYARYLGDDTNEKEQWYQTIERVVNGTFSMQKEWMFSRGMPWNEEETQSTAQEMYRRMFAMKFLPPGRGLWAMGSKLTTERRLYAALNNCAFVSTQDLAEDPTAPF 510 FRL FV + P FGFNGLGELVY+RTY+R D + +E+W++T+ RVVNGTFSMQKEW+ + + W+EE Q AQEMYRR+F MKFLPPGRGLWAMG+ LT +RRLYAALNNC FVSTQD+A DP+APF Sbjct: 208 FRLDPSFVQ-QWEDEDPPFGFNGLGELVYRRTYSRMKADGEH-RERWFETVGRVVNGTFSMQKEWLLRQSLEWDEERAQGLAQEMYRRIFEMKFLPPGRGLWAMGTTLTEDRRLYAALNNCGFVSTQDMANDPSAPF 342
BLAST of mRNA_C-linearis_contig101.763.1 vs. uniprot
Match: A0A662XT11_9STRA (Ribonucleoside-triphosphate reductase (thioredoxin) n=4 Tax=Peronosporaceae TaxID=4777 RepID=A0A662XT11_9STRA) HSP 1 Score: 180 bits (457), Expect = 4.950e-50 Identity = 90/145 (62.07%), Postives = 104/145 (71.72%), Query Frame = 1 Query: 85 PRAMAFRLCSHFVNSEGRANKPRFGFNGLGELVYQRTYARYLGDDTNEKEQWYQTIERVVNGTFSMQKEWMFSRGMPWNEEETQSTAQEMYRRMFAMKFLPPGRGLWAMGSKLTTERRLYAALNNCAFVSTQDLAE--DPTAPFC 513 P FRL S FV + P FGFNGLGELVY RTY+R D T KE+W++T+ERVVNGTF+MQK+W+ G PWNE+E TA+EMY R+F MKF PPGRGLWAMGS +T ER LYAALNNCAFVST D+ E P PFC Sbjct: 58 PGYKQFRLDSRFVAGFAQITPP-FGFNGLGELVYMRTYSRVKADGT--KERWFETVERVVNGTFNMQKKWLQQLGQPWNEQEMTHTAEEMYTRIFYMKFTPPGRGLWAMGSPITEERGLYAALNNCAFVSTADILELDTPAEPFC 199
BLAST of mRNA_C-linearis_contig101.763.1 vs. uniprot
Match: A0A485L5Q2_9STRA (Ribonucleoside-triphosphate reductase (thioredoxin) n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485L5Q2_9STRA) HSP 1 Score: 180 bits (457), Expect = 6.510e-50 Identity = 90/144 (62.50%), Postives = 105/144 (72.92%), Query Frame = 1 Query: 88 RAMAFRLCSHFVNSEGRANKPRFGFNGLGELVYQRTYARYLGDDTNEKEQWYQTIERVVNGTFSMQKEWMFSRGMPWNEEETQSTAQEMYRRMFAMKFLPPGRGLWAMGSKLTTERRLYAALNNCAFVSTQDLAE--DPTAPFC 513 R FRL FV S + P FGFNGLGELVY RTY+R D T KEQWY+T+ERVVNGT++MQK W+ RG+ WN E +A+EMYRR+F MKFLPPGRGLWAMGS +T ER+LYAALNNCAFVST+D+ P PFC Sbjct: 91 REKKFRLSKKFVESF-KDVPPPFGFNGLGELVYMRTYSRDKADGT--KEQWYETVERVVNGTYNMQKHWLEHRGLGWNGHEAHRSAREMYRRIFDMKFLPPGRGLWAMGSPITEERKLYAALNNCAFVSTEDVDRRFSPAEPFC 231
BLAST of mRNA_C-linearis_contig101.763.1 vs. uniprot
Match: F1A3P6_DICPU (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F1A3P6_DICPU) HSP 1 Score: 180 bits (456), Expect = 7.730e-50 Identity = 83/137 (60.58%), Postives = 108/137 (78.83%), Query Frame = 1 Query: 100 FRLCSHFVNSEGRANKPRFGFNGLGELVYQRTYARYLGDDTNEKEQWYQTIERVVNGTFSMQKEWMFSRGMPWNEEETQSTAQEMYRRMFAMKFLPPGRGLWAMGSKLTTERRLYAALNNCAFVSTQDLAEDPTAPF 510 F+L F+ E R K +FGF LGE+VY+RTY+R + DTN E+WY+T+ERVVNGT++MQK W+ S G+ WN+ + QS+AQEMYR++F MKFLPPGRGLWAMGS +T ++ LYAALNNCAFVST D+ ++PT PF Sbjct: 66 FKLNDQFIE-EYRKKKAKFGFGILGEIVYRRTYSR-VKPDTNTNEKWYETVERVVNGTYNMQKRWIESHGLSWNDTKAQSSAQEMYRKIFEMKFLPPGRGLWAMGSPITEKKGLYAALNNCAFVSTMDMKDNPTKPF 200
BLAST of mRNA_C-linearis_contig101.763.1 vs. uniprot
Match: A0A329SLK2_9STRA (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SLK2_9STRA) HSP 1 Score: 175 bits (443), Expect = 1.030e-49 Identity = 89/145 (61.38%), Postives = 101/145 (69.66%), Query Frame = 1 Query: 85 PRAMAFRLCSHFVNSEGRANKPRFGFNGLGELVYQRTYARYLGDDTNEKEQWYQTIERVVNGTFSMQKEWMFSRGMPWNEEETQSTAQEMYRRMFAMKFLPPGRGLWAMGSKLTTERRLYAALNNCAFVSTQDLAE--DPTAPFC 513 P F L FV S P FGFNGLGELVY RTY+R D T KE+W++TIERV+NGTF+MQK+W G PWNEEE AQEMY R+F MKF PPGRGLWAMGS +T +R LYAALNNCAFVST D+ E P+ PFC Sbjct: 52 PDYKPFTLDKAFVASFENQTPP-FGFNGLGELVYMRTYSRVKADGT--KERWFETIERVINGTFNMQKKWSQQLGQPWNEEEINHIAQEMYTRVFQMKFTPPGRGLWAMGSPITEDRGLYAALNNCAFVSTADILELKTPSEPFC 193 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig101.763.1 >prot_C-linearis_contig101.763.1 ID=prot_C-linearis_contig101.763.1|Name=mRNA_C-linearis_contig101.763.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=171bp DLPATQNTRVGGLGASNHEEMESDNMATPRAMAFRLCSHFVNSEGRANKPback to top mRNA from alignment at C-linearis_contig101:594767..596331- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig101.763.1 ID=mRNA_C-linearis_contig101.763.1|Name=mRNA_C-linearis_contig101.763.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1565bp|location=Sequence derived from alignment at C-linearis_contig101:594767..596331- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig101:594767..596331- >mRNA_C-linearis_contig101.763.1 ID=mRNA_C-linearis_contig101.763.1|Name=mRNA_C-linearis_contig101.763.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at C-linearis_contig101:594767..596331- (Chordaria linearis ClinC8C monoicous)back to top |