Homology
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Match:
A0A6H5KGZ7_9PHAE (MULE domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGZ7_9PHAE)
HSP 1 Score: 114 bits (284), Expect = 1.630e-27
Identity = 57/81 (70.37%), Postives = 64/81 (79.01%), Query Frame = 2
Query: 62 NRLGDGRAEEECTALSYHMVSIQDNTFNTNQYKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLFRTFRELIGGAQPQ 304
NR+ E++ AL YH + IQDNTFNTNQYKY LAL V VDKEN+T IAMQALL+NERTEDF FLFR FRELI GAQP+
Sbjct: 18 NRIAWALDEQKTNALRYHSLIIQDNTFNTNQYKYHLALKVAVDKENYTHIAMQALLANERTEDFEFLFREFRELIEGAQPE 98
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Match:
A0A6H5KJW1_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW1_9PHAE)
HSP 1 Score: 110 bits (276), Expect = 3.210e-27
Identity = 54/73 (73.97%), Postives = 61/73 (83.56%), Query Frame = 2
Query: 86 EEECTALSYHMVSIQDNTFNTNQYKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLFRTFRELIGGAQPQ 304
E++ AL Y + IQDNTFNTN+YKY LALIVVVDKEN+TQIAMQALL+NERTEDF FLFR FREL G QP+
Sbjct: 124 EQQGNALRYSSIIIQDNTFNTNEYKYHLALIVVVDKENYTQIAMQALLANERTEDFKFLFRVFRELCEGVQPE 196
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Match:
A0A6H5KQ14_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ14_9PHAE)
HSP 1 Score: 111 bits (278), Expect = 1.350e-26
Identity = 54/74 (72.97%), Postives = 61/74 (82.43%), Query Frame = 2
Query: 86 EEECTALSYHMVSIQDNTFNTNQYKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLFRTFRELIGGAQPQV 307
E+E A YH V +QDNTFNTN YK+FLALIVVVD EN+TQIAMQALLSNER+EDF+FL TF+EL GG PQV
Sbjct: 20 EQEQNARRYHRVILQDNTFNTNVYKFFLALIVVVDMENYTQIAMQALLSNERSEDFIFLMETFKELCGGLMPQV 93
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Match:
A0A6H5JYV9_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYV9_9PHAE)
HSP 1 Score: 110 bits (275), Expect = 4.800e-26
Identity = 54/74 (72.97%), Postives = 61/74 (82.43%), Query Frame = 2
Query: 86 EEECTALSYHMVSIQDNTFNTNQYKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLFRTFRELIGGAQPQV 307
E++ AL Y + IQDNTFNTN+YKY LALIVVVD EN+TQIAMQALL+NERTEDF FLFR FREL G QP+V
Sbjct: 124 EQQGNALRYSSIIIQDNTFNTNEYKYHLALIVVVDNENYTQIAMQALLANERTEDFKFLFRVFRELCEGVQPEV 197
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Match:
A0A6H5K030_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K030_9PHAE)
HSP 1 Score: 105 bits (262), Expect = 2.590e-24
Identity = 54/76 (71.05%), Postives = 62/76 (81.58%), Query Frame = 2
Query: 86 EEECTALSYHMVSIQDNTFNTNQ--YKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLFRTFRELIGGAQPQV 307
E++ AL Y + IQDNTFNTN+ YKY LALIVVVDKEN+TQIAMQALL+NERTED+ FLFR FREL G QP+V
Sbjct: 53 EQKRNALRYSRIIIQDNTFNTNERVYKYHLALIVVVDKENYTQIAMQALLANERTEDYKFLFRVFRELCQGMQPEV 128
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Match:
A0A6H5JXK5_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK5_9PHAE)
HSP 1 Score: 104 bits (259), Expect = 7.000e-24
Identity = 49/74 (66.22%), Postives = 60/74 (81.08%), Query Frame = 2
Query: 86 EEECTALSYHMVSIQDNTFNTNQYKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLFRTFRELIGGAQPQV 307
+++ A+ YH + IQDNTFNTN YK+FLALIVVVDKEN TQIAMQALL+NER+E F F+F +F+EL GG P V
Sbjct: 333 DQKVLAMRYHKIIIQDNTFNTNVYKFFLALIVVVDKENHTQIAMQALLANERSESFEFIFESFKELCGGGSPGV 406
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Match:
A0A6H5KFX3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX3_9PHAE)
HSP 1 Score: 103 bits (256), Expect = 1.750e-23
Identity = 51/73 (69.86%), Postives = 58/73 (79.45%), Query Frame = 2
Query: 86 EEECTALSYHMVSIQDNTFNTNQYKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLFRTFRELIGGAQPQ 304
E++ AL Y + IQDNTFNTN+YKY LALIVVVD EN+TQIAMQALL+NERTEDF FLFR F L G QP+
Sbjct: 28 EQQRNALRYSSIIIQDNTFNTNEYKYHLALIVVVDNENYTQIAMQALLANERTEDFKFLFRVFGGLCEGLQPE 100
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Match:
A0A6H5JG50_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG50_9PHAE)
HSP 1 Score: 97.4 bits (241), Expect = 4.340e-22
Identity = 56/104 (53.85%), Postives = 64/104 (61.54%), Query Frame = 2
Query: 86 EEECTALSYHMVSIQDNTFNTN------------------------------QYKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLFRTFRELIGGAQPQV 307
E++ AL Y+ + IQDNTF TN +YKY+LALIVVVDKEN+TQIAMQALLSNERTEDF FLFR FREL GAQP+V
Sbjct: 130 EQKKNALRYYPIIIQDNTFGTNAPLVYSGKLLIPRVSDCVSDLNSACSWYSTRYKYWLALIVVVDKENYTQIAMQALLSNERTEDFRFLFRVFRELCEGAQPEV 233
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Match:
D7G8C7_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C7_ECTSI)
HSP 1 Score: 95.1 bits (235), Expect = 1.180e-20
Identity = 45/74 (60.81%), Postives = 59/74 (79.73%), Query Frame = 2
Query: 86 EEECTALSYHMVSIQDNTFNTNQYKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLFRTFRELIGGAQPQV 307
+++ A+ YH V +QDNTFNTN YK+ LALIVVVDKEN +QIAMQALLS+ER+E F F+F +F++L G P+V
Sbjct: 57 QQKYNAVRYHSVIVQDNTFNTNIYKFHLALIVVVDKENHSQIAMQALLSDERSESFEFVFESFKQLCEGGTPEV 130
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Match:
A0A6H5K2E4_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2E4_9PHAE)
HSP 1 Score: 91.7 bits (226), Expect = 2.790e-20
Identity = 42/73 (57.53%), Postives = 58/73 (79.45%), Query Frame = 2
Query: 86 EEECTALSYHMVSIQDNTFNTNQYKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLFRTFRELIGGAQPQ 304
+++ A+ YH V +QDNTFNTN YK+ LAL+VV+DKEN +QIAMQALLS+ER+E F F+F +F++L G P+
Sbjct: 111 QQKYNAVRYHFVIVQDNTFNTNIYKFHLALMVVLDKENHSQIAMQALLSDERSESFEFVFESFKQLCEGGTPE 183
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 24
0 1 Expect = 1.63e-27 / Id = 70.37 Expect = 3.21e-27 / Id = 73.97 Expect = 1.35e-26 / Id = 72.97 Expect = 4.80e-26 / Id = 72.97 Expect = 2.59e-24 / Id = 71.05 Expect = 7.00e-24 / Id = 66.22 Expect = 1.75e-23 / Id = 69.86 Expect = 4.34e-22 / Id = 53.85 Expect = 1.18e-20 / Id = 60.81 Expect = 2.79e-20 / Id = 57.53 Sequence A0A6H5KGZ7_9PHAE A0A6H5KJW1_9PHAE A0A6H5KQ14_9PHAE A0A6H5JYV9_9PHAE A0A6H5K030_9PHAE A0A6H5JXK5_9PHAE A0A6H5KFX3_9PHAE A0A6H5JG50_9PHAE D7G8C7_ECTSI A0A6H5K2E4_9PHAE Pages
back to top
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig101.754.1
>prot_C-linearis_contig101.754.1 ID=prot_C-linearis_contig101.754.1|Name=mRNA_C-linearis_contig101.754.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=64bp
MVSIQDNTFNTNQYKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLF back to top mRNA from alignment at C-linearis_contig101:502627..503101-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig101.754.1 ID=mRNA_C-linearis_contig101.754.1|Name=mRNA_C-linearis_contig101.754.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=475bp|location=Sequence derived from alignment at C-linearis_contig101:502627..503101- (Chordaria linearis ClinC8C monoicous)AGCTTCAGCTGGAGGGTTGTTGGATGAGGTTCAAGTTGGACAAGGCCGGA
CGGGTTAAGCTAATCGCTTGGGCGACGGACGAGCAGAGGAAGAATGCACT
GCGCTATCATACCAC ATGGTCAGCATCCAGGACAACACGTTCAACACGAA
CCA GTGAGCGGAAATTTTTGCGTTCTGTGTCCCGGGACCTCTGTGTGACC
CGGTGTGATTTGAGCATTCCCGTACAAAATGATACTTTCGCTCGTCCTCC
GTTTTCCGAATGTCTTCTCATAACATGCGTGTCCGTTGTGTGCTCAACTT
GTTCGTGATCCTCCAACAAAGGTACAAGTACTTTCTGGCACTGATAGTCG
TTGTGGACAAGGAAAACTTCACCCAGATCGCGATGCAGGCCCTGCTTTCA
AACGAGCGGACGGAGGACTTTGTTTTCCTCTTTCGAACCTTTAGAGAACT
GATCGGGGGAGCGCAGCCGCAGGTG back to top Coding sequence (CDS) from alignment at C-linearis_contig101:502627..503101-
>mRNA_C-linearis_contig101.754.1 ID=mRNA_C-linearis_contig101.754.1|Name=mRNA_C-linearis_contig101.754.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at C-linearis_contig101:502627..503101- (Chordaria linearis ClinC8C monoicous) back to top