mRNA_C-linearis_contig101.754.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Match: A0A6H5KGZ7_9PHAE (MULE domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGZ7_9PHAE) HSP 1 Score: 114 bits (284), Expect = 1.630e-27 Identity = 57/81 (70.37%), Postives = 64/81 (79.01%), Query Frame = 2 Query: 62 NRLGDGRAEEECTALSYHMVSIQDNTFNTNQYKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLFRTFRELIGGAQPQ 304 NR+ E++ AL YH + IQDNTFNTNQYKY LAL V VDKEN+T IAMQALL+NERTEDF FLFR FRELI GAQP+ Sbjct: 18 NRIAWALDEQKTNALRYHSLIIQDNTFNTNQYKYHLALKVAVDKENYTHIAMQALLANERTEDFEFLFREFRELIEGAQPE 98
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Match: A0A6H5KJW1_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW1_9PHAE) HSP 1 Score: 110 bits (276), Expect = 3.210e-27 Identity = 54/73 (73.97%), Postives = 61/73 (83.56%), Query Frame = 2 Query: 86 EEECTALSYHMVSIQDNTFNTNQYKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLFRTFRELIGGAQPQ 304 E++ AL Y + IQDNTFNTN+YKY LALIVVVDKEN+TQIAMQALL+NERTEDF FLFR FREL G QP+ Sbjct: 124 EQQGNALRYSSIIIQDNTFNTNEYKYHLALIVVVDKENYTQIAMQALLANERTEDFKFLFRVFRELCEGVQPE 196
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Match: A0A6H5KQ14_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ14_9PHAE) HSP 1 Score: 111 bits (278), Expect = 1.350e-26 Identity = 54/74 (72.97%), Postives = 61/74 (82.43%), Query Frame = 2 Query: 86 EEECTALSYHMVSIQDNTFNTNQYKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLFRTFRELIGGAQPQV 307 E+E A YH V +QDNTFNTN YK+FLALIVVVD EN+TQIAMQALLSNER+EDF+FL TF+EL GG PQV Sbjct: 20 EQEQNARRYHRVILQDNTFNTNVYKFFLALIVVVDMENYTQIAMQALLSNERSEDFIFLMETFKELCGGLMPQV 93
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Match: A0A6H5JYV9_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYV9_9PHAE) HSP 1 Score: 110 bits (275), Expect = 4.800e-26 Identity = 54/74 (72.97%), Postives = 61/74 (82.43%), Query Frame = 2 Query: 86 EEECTALSYHMVSIQDNTFNTNQYKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLFRTFRELIGGAQPQV 307 E++ AL Y + IQDNTFNTN+YKY LALIVVVD EN+TQIAMQALL+NERTEDF FLFR FREL G QP+V Sbjct: 124 EQQGNALRYSSIIIQDNTFNTNEYKYHLALIVVVDNENYTQIAMQALLANERTEDFKFLFRVFRELCEGVQPEV 197
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Match: A0A6H5K030_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K030_9PHAE) HSP 1 Score: 105 bits (262), Expect = 2.590e-24 Identity = 54/76 (71.05%), Postives = 62/76 (81.58%), Query Frame = 2 Query: 86 EEECTALSYHMVSIQDNTFNTNQ--YKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLFRTFRELIGGAQPQV 307 E++ AL Y + IQDNTFNTN+ YKY LALIVVVDKEN+TQIAMQALL+NERTED+ FLFR FREL G QP+V Sbjct: 53 EQKRNALRYSRIIIQDNTFNTNERVYKYHLALIVVVDKENYTQIAMQALLANERTEDYKFLFRVFRELCQGMQPEV 128
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Match: A0A6H5JXK5_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK5_9PHAE) HSP 1 Score: 104 bits (259), Expect = 7.000e-24 Identity = 49/74 (66.22%), Postives = 60/74 (81.08%), Query Frame = 2 Query: 86 EEECTALSYHMVSIQDNTFNTNQYKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLFRTFRELIGGAQPQV 307 +++ A+ YH + IQDNTFNTN YK+FLALIVVVDKEN TQIAMQALL+NER+E F F+F +F+EL GG P V Sbjct: 333 DQKVLAMRYHKIIIQDNTFNTNVYKFFLALIVVVDKENHTQIAMQALLANERSESFEFIFESFKELCGGGSPGV 406
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Match: A0A6H5KFX3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX3_9PHAE) HSP 1 Score: 103 bits (256), Expect = 1.750e-23 Identity = 51/73 (69.86%), Postives = 58/73 (79.45%), Query Frame = 2 Query: 86 EEECTALSYHMVSIQDNTFNTNQYKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLFRTFRELIGGAQPQ 304 E++ AL Y + IQDNTFNTN+YKY LALIVVVD EN+TQIAMQALL+NERTEDF FLFR F L G QP+ Sbjct: 28 EQQRNALRYSSIIIQDNTFNTNEYKYHLALIVVVDNENYTQIAMQALLANERTEDFKFLFRVFGGLCEGLQPE 100
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Match: A0A6H5JG50_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG50_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 4.340e-22 Identity = 56/104 (53.85%), Postives = 64/104 (61.54%), Query Frame = 2 Query: 86 EEECTALSYHMVSIQDNTFNTN------------------------------QYKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLFRTFRELIGGAQPQV 307 E++ AL Y+ + IQDNTF TN +YKY+LALIVVVDKEN+TQIAMQALLSNERTEDF FLFR FREL GAQP+V Sbjct: 130 EQKKNALRYYPIIIQDNTFGTNAPLVYSGKLLIPRVSDCVSDLNSACSWYSTRYKYWLALIVVVDKENYTQIAMQALLSNERTEDFRFLFRVFRELCEGAQPEV 233
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Match: D7G8C7_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C7_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 1.180e-20 Identity = 45/74 (60.81%), Postives = 59/74 (79.73%), Query Frame = 2 Query: 86 EEECTALSYHMVSIQDNTFNTNQYKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLFRTFRELIGGAQPQV 307 +++ A+ YH V +QDNTFNTN YK+ LALIVVVDKEN +QIAMQALLS+ER+E F F+F +F++L G P+V Sbjct: 57 QQKYNAVRYHSVIVQDNTFNTNIYKFHLALIVVVDKENHSQIAMQALLSDERSESFEFVFESFKQLCEGGTPEV 130
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Match: A0A6H5K2E4_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2E4_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 2.790e-20 Identity = 42/73 (57.53%), Postives = 58/73 (79.45%), Query Frame = 2 Query: 86 EEECTALSYHMVSIQDNTFNTNQYKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLFRTFRELIGGAQPQ 304 +++ A+ YH V +QDNTFNTN YK+ LAL+VV+DKEN +QIAMQALLS+ER+E F F+F +F++L G P+ Sbjct: 111 QQKYNAVRYHFVIVQDNTFNTNIYKFHLALMVVLDKENHSQIAMQALLSDERSESFEFVFESFKQLCEGGTPE 183 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig101.754.1 >prot_C-linearis_contig101.754.1 ID=prot_C-linearis_contig101.754.1|Name=mRNA_C-linearis_contig101.754.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=64bp MVSIQDNTFNTNQYKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLFback to top mRNA from alignment at C-linearis_contig101:502627..503101- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig101.754.1 ID=mRNA_C-linearis_contig101.754.1|Name=mRNA_C-linearis_contig101.754.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=475bp|location=Sequence derived from alignment at C-linearis_contig101:502627..503101- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig101:502627..503101- >mRNA_C-linearis_contig101.754.1 ID=mRNA_C-linearis_contig101.754.1|Name=mRNA_C-linearis_contig101.754.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at C-linearis_contig101:502627..503101- (Chordaria linearis ClinC8C monoicous)back to top |