Homology
BLAST of mRNA_C-linearis_contig101.751.1 vs. uniprot
Match:
D7G6P8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6P8_ECTSI)
HSP 1 Score: 108 bits (271), Expect = 3.970e-29
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1
Query: 136 MLKALGIENQVISMTTDTAANMKNGVIVHMAPQIQWLGCGCHKTELTVQKF 288
MLKALGIENQVISMTTDTAANMKNGVIVHMAPQIQWLGCGCHKTELTVQKF
Sbjct: 1 MLKALGIENQVISMTTDTAANMKNGVIVHMAPQIQWLGCGCHKTELTVQKF 51
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.751.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 3.97e-29 / Id = 100.00 Sequence D7G6P8_ECTSI
Match Name E-value Identity Description
D7G6P8_ECTSI 3.970e-29 100.00 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 1 Model size 289 Cds size 288 Stop 0 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927365.2973015-CDS-C-linearis_contig101:487186..487474 1622927365.2973015-CDS-C-linearis_contig101:487186..487474 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 487187..487474 + 1690879655.4715307-CDS-C-linearis_contig101:487186..487474 1690879655.4715307-CDS-C-linearis_contig101:487186..487474 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 487187..487474 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig101.751.1
>prot_C-linearis_contig101.751.1 ID=prot_C-linearis_contig101.751.1|Name=mRNA_C-linearis_contig101.751.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=96bp
VSFISLTLHWIETSRSEWTVKCGTAGCEIFEGSHTGVRIGAKLTSMLKAL back to top mRNA from alignment at C-linearis_contig101:487187..487475+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig101.751.1 ID=mRNA_C-linearis_contig101.751.1|Name=mRNA_C-linearis_contig101.751.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=289bp|location=Sequence derived from alignment at C-linearis_contig101:487187..487475+ (Chordaria linearis ClinC8C monoicous)GTGTCCTTCATCTCTCTGACTCTTCACTGGATAGAGACGTCCCGCAGCGA
GTGGACCGTCAAGTGCGGCACCGCAGGCTGCGAGATCTTCGAAGGATCCC
ACACCGGTGTGCGCATCGGGGCGAAGCTCACGAGTATGCTGAAGGCTCTT
GGGATCGAGAACCAAGTGATCAGCATGACGACCGACACGGCTGCGAATAT
GAAGAACGGCGTCATTGTCCACATGGCGCCGCAGATTCAGTGGCTTGGAT
GTGGATGCCACAAGACTGAGCTCACGGTGCAGAAGTTC back to top Coding sequence (CDS) from alignment at C-linearis_contig101:487187..487475+
>mRNA_C-linearis_contig101.751.1 ID=mRNA_C-linearis_contig101.751.1|Name=mRNA_C-linearis_contig101.751.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at C-linearis_contig101:487187..487475+ (Chordaria linearis ClinC8C monoicous) back to top