Homology
BLAST of mRNA_C-linearis_contig101.750.1 vs. uniprot
Match:
D8LE30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE30_ECTSI)
HSP 1 Score: 85.5 bits (210), Expect = 1.560e-14
Identity = 124/436 (28.44%), Postives = 174/436 (39.91%), Query Frame = 3
Query: 3 REDEPNSRDAR-----KAMEADCWWVRSQENDLLKRGSRPNAAQHR-------------SCIKPGDERIHPPWLHPHRG------------EVQSSGSEHGGAALNQ-----------SSPLARPPRDISPRQLPVGQLAALELMND---TSQKEHQNLLVP------GAGHDAESSRQDEPFRSKYEGESDENAYLDARAHTLLEHCRQLLAPSSTPS-DQV-----STPASTG------------LEERARTLLTDCKHS---------------SGRPCIPEAQSKVAKASIGEDSKVSC---------GGC----FGERENTHRFQQEQG-------NVRHAANVSLVRETEKYSALMTSLLHDVHRAGDRSKHDRSLFRSVLVRNGAEERA------------DWLRDDPALSALLRRFGKIEAEIEKRHS 965
R+ EP R+ R +A E D WW RSQE K G A + R +KP PP+L +G + +S E+ L+Q +SP RP D P QL A EL+ND T++ E + V G DAES QD+ + G DE LD RA TLLE CRQ+LAPSST + DQV S S G LE+RA LL +C+ S +P + Q + + +GED + GG FGERE + QE+G +V + +V++ + + S S ++R+ + L +G +ER DW R DP LSALLRR ++E E+++R +
Sbjct: 17 RQSEPLPREERXXXXXEATEGDFWWTRSQE----KFGEATEAVRSRCNDIEDLPSTHVAEIVKP------PPYLESGKGKSPQPSIGSPSKQSESDDCENKRRMLDQLAVLEGSQTPLNSPPGRPAHDELPTQLSTSGSEAPELVNDRLATAEVEAADTNVDETGVHVSIGLDAESLVQDKSINACDRG-GDELETLDVRARTLLEECRQVLAPSSTITLDQVRSFTSSASQSNGPIIAALDNLPEELEKRAWMLLNNCEEPPLLPTYNEEVLAVPCSSKPPALDTQGDLVR--LGEDDGKTAKVLLRRNPPGGVVARPFGEREGAYHLDQERGWQPTCSSDVGNLGDVNVDSIGRVFPTITDSRY---------SNNERTWYSPALDSSGVQERMSSMTLATTPGEEDWFRRDPVLSALLRRHDEVETELKRRRA 430
BLAST of mRNA_C-linearis_contig101.750.1 vs. uniprot
Match:
A0A6H5J9P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9P1_9PHAE)
HSP 1 Score: 80.9 bits (198), Expect = 5.390e-13
Identity = 120/424 (28.30%), Postives = 179/424 (42.22%), Query Frame = 3
Query: 3 REDEPNSRDARK-----AMEADCWWVRSQEN-----DLLKRGSRPNAAQHRSCIKPGDERIHPPWLHPHRG------------EVQSSGSEHGGAALNQ-----------SSPLARPPRDISPRQLPVGQLAALELMND---TSQKEHQNLLVPGAG-HD-------AESSRQDEPFRSKYEGESDENAYLDARAHTLLEHCRQLLAPSSTPS-DQV-----STPASTG------------LEERARTLLTDCKHS---------------SGRPCIPEAQSKVAKASI--GEDSKVSC-----GGC----FGERENTHRFQQEQG-NVRHAANVSLVRET--EKYSALMTSLLHDVHRAGDRSKHDRSLFRSVLVRNGAEERA------------DWLRDDPALSALLRRFGKIEAEIEKRHS 965
R+ EP R+ R+ A E D WW RSQEN + ++ SR N + RS + P+L G + +S E+ L+Q +SP R D P QL A EL+ND T++ E + V G HD AE+ ++ ++ +G DE LDARA TLL+ CRQ+LAPSST + D+V S S G LE+RA LL C+ S +P +AQ + + G+ +KV GG GERE + Q +G R +++V +R+ + + +++ H S +R+ + L +G +ER DW R DP LSALLRR ++EAE+++R +
Sbjct: 17 RQSEPLPREERRRXRQEAKEGDFWWTRSQENFGEATEAVR--SRCNDIEDRSSTHVAENAKPLPFLESGEGKSPQPSIGSPPKQSESDDCENERPTLDQIAVLEGSQPPLNSPPGRRAHDELPTQLSKRGSEAPELVNDRLATAEAEAADTNVHETGVHDMVPVGLHAENLVLNKSINAR-DGGGDELQTLDARARTLLQECRQVLAPSSTITLDEVASFTYSASQSNGPIIAALDDLPEELEKRAWMLLNHCEEPPLLPAYNEEVLAVPCSSKPPAIDAQGDLVRLGKYDGKTAKVLLRRNPPGGAVARPLGEREGAYHLDQGRGCQSRCSSDVRNLRDVNIDSIGRVCSTIAESRH-----SNRERTWYSPALDSSGVQERMSSMTVATTPGEEDWFRQDPVLSALLRRHDEVEAELKRRRA 432
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.750.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.56e-14 / Id = 28.44 Expect = 5.39e-13 / Id = 28.30 Sequence D8LE30_ECTSI A0A6H5J9P1_9PHAE
Match Name E-value Identity Description
D8LE30_ECTSI 1.560e-14 28.44 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] A0A6H5J9P1_9PHAE 5.390e-13 28.30 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 3 Model size 1176 Cds size 969 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927365.2196527-UTR-C-linearis_contig101:480273..480314 1622927365.2196527-UTR-C-linearis_contig101:480273..480314 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig101 480274..480314 + 1690879655.4282982-UTR-C-linearis_contig101:480273..480314 1690879655.4282982-UTR-C-linearis_contig101:480273..480314 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig101 480274..480314 + 1622927365.2632654-UTR-C-linearis_contig101:484518..484684 1622927365.2632654-UTR-C-linearis_contig101:484518..484684 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig101 484519..484684 + 1690879655.4627688-UTR-C-linearis_contig101:484518..484684 1690879655.4627688-UTR-C-linearis_contig101:484518..484684 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig101 484519..484684 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927365.231615-CDS-C-linearis_contig101:480314..480331 1622927365.231615-CDS-C-linearis_contig101:480314..480331 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 480315..480331 + 1690879655.4375193-CDS-C-linearis_contig101:480314..480331 1690879655.4375193-CDS-C-linearis_contig101:480314..480331 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 480315..480331 + 1622927365.2434206-CDS-C-linearis_contig101:483196..483653 1622927365.2434206-CDS-C-linearis_contig101:483196..483653 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 483197..483653 + 1690879655.4460218-CDS-C-linearis_contig101:483196..483653 1690879655.4460218-CDS-C-linearis_contig101:483196..483653 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 483197..483653 + 1622927365.252184-CDS-C-linearis_contig101:484023..484518 1622927365.252184-CDS-C-linearis_contig101:484023..484518 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 484024..484518 + 1690879655.4543908-CDS-C-linearis_contig101:484023..484518 1690879655.4543908-CDS-C-linearis_contig101:484023..484518 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 484024..484518 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig101.750.1
>prot_C-linearis_contig101.750.1 ID=prot_C-linearis_contig101.750.1|Name=mRNA_C-linearis_contig101.750.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=323bp
MEADCWWVRSQENDLLKRGSRPNAAQHRSCIKPGDERIHPPWLHPHRGEV back to top mRNA from alignment at C-linearis_contig101:480274..484684+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig101.750.1 ID=mRNA_C-linearis_contig101.750.1|Name=mRNA_C-linearis_contig101.750.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4411bp|location=Sequence derived from alignment at C-linearis_contig101:480274..484684+ (Chordaria linearis ClinC8C monoicous)TCCGTGAGGACGAGCCGAACTCCCGTGATGCACGTAAAGCC ATGGAAGCA
GATTGTTG GTAAGCGTGTCGGACACTTGTTTAATCATCTCTTTACACACC
GCAGGAGGTAGGTGGAGACATCCCCTCTTGTGTGACCCCGGATGATAGGC
TAGCTAGTTGTAGTGAAGAAGAGGAGGCAGGCTACGAAAAAACATTAATG
GGCGATAAAAAAAATAAAAAAATAGGTGCTTCGCAAGTAAATTACGACCC
GCAGCGGATGACCGTTGAGTTGCCGTGAATATCGCCCCTACACACCTCCT
TGGCAGTAACCTCTCATCTGGTAACCAAGCCGTCTGTTCATCATATAAAA
TGATCAAATCGGCTATGATAGCATGTCTATACTGCTGTGGCCAACTGCCA
GATGATTTGGCAACTATTTCATATGTACCTGGTAGTCTACATGACAACGT
GTTTAGTAGCGATTGATCGCCGCTTCTTCGGCTCAACATCGAACCACGAT
GTTAATCTACTGCTGTAGTCTCCTCTTGAGCTGATTTGTGGCAAAGGCGT
GATCTATACGATGAGCAGCTGACCAATCGTGTCGGGGGATGCGGAGGGGC
TCAGGAAATCACGATGGCAGGACATATCGTGTGTGATGTGTAATGCGTGT
AAACGTGTATCCATTGGAACGGGTGTACCATCGCCATTTTGTTCTTTGTG
GGGATGGTACGTAAGCATCAACTTAGCTATGTAGATCTCTCCAACAGACA
TCGGTTCGGTGTTTGCATTTCCTGCCACAGCAGTGCATACTCACTTGCTC
TGGCGCTCTTCTCTCTGACGAGTGTCTGCCCTTTGCGATGGCTATGTACT
GAAAGCGCCCCAGACCCTTAGCTACGCTGGGTATTGAGTTTTGAGAGTCT
CAACCTCTGGTATCCGCAGGTTTTCGTACCGGCTCTCCGTCACACGCACA
AATCTACCGAGCTGAACTGCTACATAACTACTCCGAGCTTTGAGGCCTTT
TTGCATAGATAGCAAATTCTTGCGCACCCGGCCGGCGTTTTGGGAAGTCC
AGAAACAGGTACACGCGTCATATTAAAGTAGTAGGACGGTTCAGACTCGG
AATACTTCAAGCGAGTTTGCTGGGGTCAAGCTGGGGAAGGGAGAACCCGG
AACTAACCGTGTCAGCCCAGTTTCTTCTATAGGCAGAGGAACGTATGAAG
ACAAAGAAGATCGCGAAGTGTGTACTGCTAAAATTCCTGATTGTCAGTTT
GCTCGGGTTAGGATGAGGCGCGAAAACAGTCTTGTTGCACGTAACATCGA
GAGCGACGACATAGTGCCGCGCTTCTCATCATGTGCTACTCGTAGATCTC
TTTCTTTTCAGCATGTTGGCGATTTCGCGTATTTTATAGCAAGATGAGTG
CATGTCAGTCCAACCCCAGCACGATCGAATTGGTGCCTGCGTCGAATCTA
CGGAAGCATGTAGACAAGGCACGGCGGCGGTGGATGTGTATACTTCGAAG
TATACATTGTTCCCTCATACGCTTTGATATTCCGCACACTGGGCGTGGTA
AGACTCAAGAAGGCCCAGGCACTTGCTTCGGCATGTGTCACTGCGATAGC
CATGCGACGCTTGTGTCATTCAAGCTGATGACCTTTCAGCTTGCGATCCA
CTTGCTGCGCAGAATGAGTAAGATATAGGACAATGCAGGAGCAGAGAACA
CCCTCGTTTCTGTTGCGAAAAATGTACTGCGTACAAGACCGGGCGTAGCT
GCCCGCCCTCAATAAATGTGCGGAAATGTAGTTGCGGGATGTCACCGACT
TACTCACAAAAGGAATACGTTACGGTTATGGAGTGTACCAAGAGGTTGAG
ACGTTCTGCACGATATGCCTCTACGGCTTTAACAACACACGTGAGAACAG
CAGTCCGGTCACCAATATATCAGTGCTACTGCTGTAGCCGGCAGAAAACA
AATATTTGCTGCGCTCATAGATGTGGAGTCTGCGATACACAGCGATGCGT
CTCCCCATCACACTCATCAACGTGCGTGCTGCCTTTCCTGATGTGCATAA
GCCGTCTCCGCACATGATGGGTGTGGGGTGTGTCTCCGCGTCGGAGGGGT
GCTTGGGAGAAAAGAGCAAGAAAATGCTGTTCGTTTCTTCCAACCAAAAA
GGAACCACTATTCATCCGTAGCCGGGCACAACTCTCGGGGAGCTGGAACT
CTAGTGCACCACGAATCCAGTGTCCATGAAAAGTGTGCTCAGAAGGGAAG
CATCGCACCACTTCTTCAAGCTTTCCAAAATACCCCGAAAGAAGAAAAAT
CCCAGCGCCGTGACGCAGTGACACAGAAGGGAGTTACTGCGGATGGGCAA
GGTTCTGCTCGTGCGCTATCGAAACAGCCAGAACCAAAAATTTGATCAGT
ACATAACTGCTAGCTGGGCACAACTGGACACCGATAGCTCTGCTCAAACG
CCGAATCTCGTGTCCGTGGAAGGTGTGCGATGATGAAAAATTATTGCTCT
GCCTCGTCAATCTTTCCTAAATGTAAAATGGCGTAAGGTGACGCGTTACT
GAAGGGTTTCGTGAAGTGTACTGTTTTGAGAGTAGGGCGAATTGTCCCGC
TTCCATGAGAGCGTTTACACGTAACTCTAGTCATCCATATGGGACACAGG
TTCACGAAAGGAGATGGTAGCATCTTTCTCGGCTCGTGCAGACCCACGGC
CTGCCTGATTGCAAAGCAGTTCTATTCAAGATGGACCTGGAAACTTGAGA
AGAAGAGCTCTCCGAGTCCCTTTTCTCCCTAGACTTGTATCACCGCTCGG
ATATTTTGTCGGCACAATGTGTCTCCGTTGTAACGGAGAGTTTGAGCGTC
ATGTCGGGGAGAGTTTGAACCCCTGTCCGAATTCGTCAATTATTTTTTGT
GTTGTTTAAATTCATGCTCGTAGGTGGGTGAGATCTCAGGAGAACGATTT
GTTGAAAAGGGGTTCAAGGCCAAACGCCGCCCAGCACCGATCATGCATCA
AACCCGGAGACGAGAGGATACACCCTCCTTGGCTGCATCCACATCGAGGC
GAGGTTCAATCTAGTGGCTCGGAGCACGGAGGCGCGGCGTTGAATCAGAG
TTCGCCTTTAGCGCGTCCTCCGCGTGATATATCGCCTCGACAACTACCTG
TCGGCCAACTAGCGGCGCTCGAGCTCATGAACGACACGTCCCAAAAGGAA
CATCAGAATCTGCTCGTTCCAGGAGCTGGTCATGATGCTGAAAGCTCCAG
GCAGGATGAACCATTCCGTTCAAAGTATGAGGGAGAAAGCGACGAAAACG
CGTACCTGGATGCTCGCGCCCACACGTTACTCGAACACTGTAGACAGCTG
CTTGCGCCATCATCTACTCCATCAGATCAG GTCCGTCGGGTTGTTATTAA
TTTTTAGCTCACATTGAGTGCAACATCGCACGCCTCGAGGCCATCGTCTG
ATGTAACCGTTGCTTCTCCAGGCCTCAGAAAGTTCGAATTTTTTCACTCA
AACTCCAAGTTTTCACCAAAAGCTATGTGGGATCGAAGCATGATCGACTA
CTATTATAGGAATCCCTGTTGAGCAGCTGCAGATTATTTAGAGTGCCGTA
TCTCATGCGAGGCACCGCCGTATCGCGTTGTCACAAAGATAAGGGTGCCA
ATCGCCTGGAGGACCTTTGCTTTCAATATTTTGGTTGCCTTCGGTCATTT
TTCGAGCACAGGACCAAAACTGACCGGGTACGTGGCGCTGCTGCATGCAG
GTGTCGACGCCTGCTTCTACTGGTTTAGAGGAGCGTGCGCGGACGCTGTT
GACCGACTGCAAGCATTCTAGTGGCCGACCTTGCATTCCAGAAGCACAGA
GCAAGGTTGCCAAGGCCTCTATTGGGGAAGATTCCAAAGTTTCTTGTGGT
GGGTGTTTCGGTGAGAGGGAGAACACGCACCGTTTCCAGCAAGAACAGGG
GAATGTTCGACATGCTGCCAACGTGAGCCTCGTTCGTGAAACGGAGAAGT
ATTCAGCACTCATGACTTCTCTCCTCCACGATGTCCATCGAGCCGGCGAC
AGGAGCAAGCATGACCGCTCGTTGTTCAGGTCAGTATTGGTCCGTAATGG
TGCTGAAGAGCGGGCGGACTGGCTACGTGACGACCCCGCACTCTCGGCAT
TGCTCCGCCGTTTTGGCAAGATCGAGGCGGAGATTGAGAAGCGGCACTCT
GCGAAATTGAAATGGCGCAGACCGGGCGTTGATCTACAGAAGTGA CGACA
CGCACGAACACACGATTGACAGACGGGCACCTCTTTCCCGCGAAATCTGG
AAGCCAGCACAGGCCTGACTAGTGGTTTTCTCGGTCTTCTGTGATCGCTT
CTAACTGTGTCTGCTTTGTGTATAGTAGCTCGCAAAAATGAAGAATCTGA
AAACCAACAAA back to top Coding sequence (CDS) from alignment at C-linearis_contig101:480274..484684+
>mRNA_C-linearis_contig101.750.1 ID=mRNA_C-linearis_contig101.750.1|Name=mRNA_C-linearis_contig101.750.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1938bp|location=Sequence derived from alignment at C-linearis_contig101:480274..484684+ (Chordaria linearis ClinC8C monoicous) back to top