Homology
BLAST of mRNA_C-linearis_contig101.737.1 vs. uniprot
Match:
D7FJI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJI2_ECTSI)
HSP 1 Score: 557 bits (1435), Expect = 5.400e-191
Identity = 381/583 (65.35%), Postives = 400/583 (68.61%), Query Frame = 1
Query: 37 MSSKRGAPAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLADIKAKIEHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIADMDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAALKIRDEEEGSTARSSLAVVAEETKAKPA--MTIAAGQDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESQVXXXXTGATAAA------------APAVETGLDNGSAGESSAPKMDSAAAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--MTYASLAKSWATVAADSGVAVGAPASASPSGTGNGVAASNGNSSGGWGGAPD--------AAAVGGAGLTIEQPAGQPGSGM-GHGSRPSSA-GKGQKGSGAYIPHHASPAVAASAXXXXEAAAAGNGEIMPATSLFVRKVDMTIDREEMIAHFSAYGDVTGISMNPTRGYAFIDYRNNECVQTALSTKEHYVNRKLLVVEERHSPMLQRNSRGEHGGXXXXXXXXXXXXXXXXXXXX-DRRSAGXXXXXDRPDGSKDGGGSGYKSRGRAE 1704
MS+KRGAPAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGL DIKAKI+HLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIA+ DPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAALK RDEE+GSTARS+L E +K + T+AA ESQV APA GLDNGSA ++ A K+ + A+ XXXXXXXXXXXXXXXXX MTYASLAKSWATVAADSG A GGA LTIEQP GQPG G+ HGSRPSSA GKGQKG GAYIPHHASPAVAASAXXXXEAAAAGNGEIMPATSLFVRKVDMTIDR+EMIAHFSAYG+VTGISMNPTRGYAFIDYR NECVQ ALSTKEHYVNRKLLVVEERHSPM+QRNSRGEHGG XXXXXX X DRR G DRPDG KDGG Y++RGRAE
Sbjct: 1 MSTKRGAPAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLEDIKAKIKHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIANTDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAALKARDEEDGSTARSALPPAEESSKPESVGEETVAAAVTQVHVQDTPVPQQTTASPVATAAVPESSPPAMAAGAAPPSESQVAASTDAXXXXXXXXXXXXXXXXXAPAAVAGLDNGSADKTPAAKVPPSPVGASTPAESTETAAAEXXXXXXXXXXXXXXXXXXXMTYASLAKSWATVAADSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAVAGGAVLTIEQPVGQPGPGVVQHGSRPSSATGKGQKGPGAYIPHHASPAVAASAXXXXEAAAAGNGEIMPATSLFVRKVDMTIDRDEMIAHFSAYGEVTGISMNPTRGYAFIDYRTNECVQIALSTKEHYVNRKLLVVEERHSPMVQRNSRGEHGGGRGGXXXXXXRVSSXRDGRDGDRRPTGRGGR-DRPDGPKDGG---YRARGRAE 579
BLAST of mRNA_C-linearis_contig101.737.1 vs. uniprot
Match:
A0A6H5L110_9PHAE (NTF2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L110_9PHAE)
HSP 1 Score: 316 bits (809), Expect = 1.710e-99
Identity = 212/334 (63.47%), Postives = 224/334 (67.07%), Query Frame = 1
Query: 37 MSSKRGAPAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLADIKAKIEHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIADMDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAALKIRDEEEGSTARSSLAVVAEETKAKPA--MTIAAGQDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESQVXXXXTG-------------ATAAAAPAVETGLDNGSAGESSAPKMDSAAAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----MTYASLAKSWATVAADSG 978
MS++RGAPAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGL DIKAKI+HLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIA+ DPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAALK RDEE+GS S+LA E K + T+AA XX ESQV PA GLDNGSA + A K+ + AA+ XXXXXXXXXXXXXXXXX MTYASLAKSWATVAADSG
Sbjct: 1 MSTRRGAPAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLEDIKAKIKHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIANTDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAALKARDEEDGS---SALAPAEESLKPESVGEETVAAAVTQVHVRDTSAPQQTTASPVATAAXXESSPPSMAAGAAPPSESQVAVPADADXXXXXXXXXXXXXXXXXXPAALAGLDNGSADRTPAAKVPPSPVAASTPVESTEKAAAEXXXXXXXXXXXXXXXXXXXXXXMTYASLAKSWATVAADSG 331
BLAST of mRNA_C-linearis_contig101.737.1 vs. uniprot
Match:
A0A835Z9L7_9STRA (NTF2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9L7_9STRA)
HSP 1 Score: 188 bits (478), Expect = 1.520e-51
Identity = 91/142 (64.08%), Postives = 109/142 (76.76%), Query Frame = 1
Query: 58 PAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLADIKAKIEHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIADMDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAAL 483
P+ AVVG HF+KQYYG+VL KP EL RFY ++STFCHA G+ +E+PV+GL +IKAKI LGL ATVDL CGSVDAQPS G++LMVTGSI + RQF QTFFLA Q Q N RHNY V NDIFR LD +P+V++AA+
Sbjct: 10 PSAAVVGGHFIKQYYGQVLPNKPTELFRFYHEKSTFCHADGSSQEDPVTGLENIKAKILSLGLADATVDLDCGSVDAQPSVDDGIILMVTGSIKLQGQRLRQFAQTFFLALQLQKNGRHNYVVMNDIFRLLDTIPDVLKAAV 151
BLAST of mRNA_C-linearis_contig101.737.1 vs. uniprot
Match:
A0A835YRG6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRG6_9STRA)
HSP 1 Score: 187 bits (475), Expect = 2.510e-48
Identity = 87/138 (63.04%), Postives = 106/138 (76.81%), Query Frame = 1
Query: 70 VVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLADIKAKIEHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIADMDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAAL 483
VVG HF+K +YGEVL +KP+ELHRFY ++STFCHA G K+E+PV GL +IK KI LGL ATVDL CGSVD Q S+ G +LLMVTG+IT+ PRQF QTF LA Q + RHN+FV ND+FR LD +PEV++AAL
Sbjct: 11 VVGHHFIKSFYGEVLPRKPLELHRFYSEQSTFCHAEGNKQEQPVMGLENIKEKIRGLGLADATVDLDCGSVDIQASQNGSILLMVTGAITLRGQAPRQFAQTFLLATHRQMDGRHNFFVLNDVFRLLDTIPEVLEAAL 148
BLAST of mRNA_C-linearis_contig101.737.1 vs. uniprot
Match:
A0A7S2GVT4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GVT4_9STRA)
HSP 1 Score: 137 bits (344), Expect = 4.090e-31
Identity = 78/178 (43.82%), Postives = 109/178 (61.24%), Query Frame = 1
Query: 28 EDRMSSKRGAPAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLADIKAKIEHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIADMDPRQFCQTFFLARQHQDNDRHN--YFVRNDIFRFLDVLPEVVQAALKIRDEEEGS-TARSSLAVVAEETK 552
+D +++RG P+PAVVG F+K+YY ++L+ P ++RFY+D+S GT E+PV G+ IKAKI G A +L GS+DAQPS+ GGVLLMVTG+IT + PRQF Q+FFLA Q + YFV ND FR + P V+ + + ++ S TA S+A A T+
Sbjct: 3 DDVEATRRGRPSPAVVGKQFIKRYY-DLLTTDPSLMYRFYQDQSAMVCGEGTHSEDPVMGMEQIKAKIAERGCLNAIFNLEHGSIDAQPSKDGGVLLMVTGTITKKNAPPRQFVQSFFLAEQQNSIKTYPPAYFVLNDTFRIVTPPPNVINSYMSVKQSTNYSATAAKSVAPAASATE 179
BLAST of mRNA_C-linearis_contig101.737.1 vs. uniprot
Match:
A0A7S2DLV2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DLV2_9STRA)
HSP 1 Score: 132 bits (331), Expect = 1.920e-29
Identity = 71/154 (46.10%), Postives = 101/154 (65.58%), Query Frame = 1
Query: 37 MSSKRGAPAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLADIKAKI----EHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIA-DMDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAAL 483
M K+G P+P V FVKQYY ++ K+P +L RFYK+ES F H++G +E + ++G+ +IKA I G VDL CGSVDAQPS+ GGV+L+VTG++T D R F Q F+LA Q + ++ +YFV ND FR+LD+ P ++ AA+
Sbjct: 1 MPPKKGHPSPRQVAQSFVKQYY-DMYMKQPKDLFRFYKEESHFLHSAGNQERKSITGIEEIKAAIASGYSSNVAGQVQVDLECGSVDAQPSKDGGVILIVTGAMTSKEDKHSRMFVQNFYLAPQ--ETEQASYFVLNDAFRYLDISPSIMDAAM 151
BLAST of mRNA_C-linearis_contig101.737.1 vs. uniprot
Match:
A0A0W8CRK0_PHYNI (NTF2 domain-containing protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CRK0_PHYNI)
HSP 1 Score: 127 bits (320), Expect = 5.550e-29
Identity = 76/168 (45.24%), Postives = 107/168 (63.69%), Query Frame = 1
Query: 58 PAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLADIKAKIEHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITI-ADMDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEV--VQAALKIRDEEEGSTARSSLAVVAEETK 552
P+P+ VG+ F++QYY L+K+P LHRFYK ES +CH G+ EEP++G I +I G GA VDL GS+D Q S GGGVL++VTG +T+ + P+ F QTFFLA Q + YFV ND RFL+ LP V+ A +++++E G T + ++ V EET+
Sbjct: 50 PSPSTVGNTFMRQYY-HFLAKEPQSLHRFYKAESRWCHGLGSHMEEPIAGQRAINDQILKRGYAGARVDLDAGSIDCQNSHGGGVLVLVTGVMTLRSSPTPKPFVQTFFLAVQPK-----GYFVLNDCLRFLE-LPGAAPVEVAPEVKEKENGKT-ETPMSPVKEETR 209
BLAST of mRNA_C-linearis_contig101.737.1 vs. uniprot
Match:
A0A485LI37_9STRA (Aste57867_20882 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LI37_9STRA)
HSP 1 Score: 130 bits (328), Expect = 6.560e-29
Identity = 70/134 (52.24%), Postives = 88/134 (65.67%), Query Frame = 1
Query: 55 APAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLADIKAKIEHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIADMDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDV 456
AP P VG+ FVKQYY +L++ P +LHRFYKDESTF H SG++ EE VSG A I + I GA V L GS+D Q S+ GGV+++VTG IT+ + P F QTFFLA QH + YFV ND+ RFL +
Sbjct: 8 APHPTTVGNTFVKQYYS-LLTESPDKLHRFYKDESTFSHGSGSQLEESVSGQASINSTILKKNYYGAVVQLDHGSIDCQASQAGGVVVLVTGVITLQNSAPAHFVQTFFLAVQH-----NGYFVLNDVLRFLHI 135
BLAST of mRNA_C-linearis_contig101.737.1 vs. uniprot
Match:
A0A6G0XNH0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XNH0_9STRA)
HSP 1 Score: 127 bits (320), Expect = 5.970e-28
Identity = 68/134 (50.75%), Postives = 87/134 (64.93%), Query Frame = 1
Query: 55 APAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLADIKAKIEHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIADMDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDV 456
AP P VG+ FVKQYY +L++ P LHRFYKDESTF H SG++ EE VSG A I + I GA V L GS+D Q S+ GGV+++VTG IT+ + P F QTFFLA Q + +FV ND+ RFL++
Sbjct: 8 APHPTTVGNAFVKQYYS-LLTESPETLHRFYKDESTFSHGSGSQPEESVSGQASINSTILKKRYSGAVVQLDHGSIDCQASQAGGVVVLVTGVITLQNSAPTHFVQTFFLAVQEK-----GFFVLNDVLRFLNI 135
BLAST of mRNA_C-linearis_contig101.737.1 vs. uniprot
Match:
A0A7S3Y115_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y115_HETAK)
HSP 1 Score: 117 bits (292), Expect = 4.470e-27
Identity = 69/139 (49.64%), Postives = 89/139 (64.03%), Query Frame = 1
Query: 55 APAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLADIKAKIEHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIAD-MDPRQ-FCQTFFLA-----RQHQDNDRHNYFVRNDIFRFL 450
+P P+ V + FV YY VLSKKP EL RFYK+ES+F + + EPV+G+ IK KI LGL GA V++G GSVDAQ S GGV+++VTG+I +A P Q F QTFFLA +Q + +YFV ND RF+
Sbjct: 5 SPPPSTVATSFVAHYY-RVLSKKPAELFRFYKEESSFTFGAPGEAAEPVTGIEAIKTKITGLGLEGAKVEVGQGSVDAQASRDGGVVMLVTGTIALATGQQPAQAFAQTFFLAPQVVVQQGRTAPVPSYFVLNDTLRFV 142
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.737.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 5.40e-191 / Id = 65.35 Expect = 1.71e-99 / Id = 63.47 Expect = 1.52e-51 / Id = 64.08 Expect = 2.51e-48 / Id = 63.04 Expect = 4.09e-31 / Id = 43.82 Expect = 1.92e-29 / Id = 46.10 Expect = 5.55e-29 / Id = 45.24 Expect = 6.56e-29 / Id = 52.24 Expect = 5.97e-28 / Id = 50.75 Expect = 4.47e-27 / Id = 49.64 Sequence D7FJI2_ECTSI A0A6H5L110_9PHAE A0A835Z9L7_9STRA A0A835YRG6_9STRA A0A7S2GVT4_9STRA A0A7S2DLV2_9STRA A0A0W8CRK0_PHYNI A0A485LI37_9STRA A0A6G0XNH0_9STRA A0A7S3Y115_HETAK Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 562.8 Seed ortholog evalue 1.8e-157 Seed eggNOG ortholog 2880.D7FJI2 Preferred name G3BP2 KEGG ko ko:K14050,ko:K14328,ko:K17265,ko:K19718 KEGG Pathway ko03013,ko03015,ko04139,map03013,map03015,map04139 KEGG Module M00430 Hectar predicted targeting category other localisation GOs GO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0000932,GO:0001654,GO:0001736,GO:0001738,GO:0001745,GO:0001751,GO:0001752,GO:0001754,GO:0002009,GO:0002064,GO:0002065,GO:0002066,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003678,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006396,GO:0006397,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006914,GO:0006996,GO:0007154,GO:0007163,GO:0007164,GO:0007165,GO:0007253,GO:0007264,GO:0007265,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007389,GO:0007399,GO:0007423,GO:0008026,GO:0008069,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009056,GO:0009653,GO:0009798,GO:0009887,GO:0009888,GO:0009889,GO:0009893,GO:0009950,GO:0009953,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010604,GO:0010628,GO:0010646,GO:0010648,GO:0016043,GO:0016070,GO:0016071,GO:0016236,GO:0016318,GO:0016333,GO:0016334,GO:0016462,GO:0016579,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023057,GO:0030111,GO:0030154,GO:0030159,GO:0030178,GO:0030182,GO:0030707,GO:0030855,GO:0031323,GO:0031326,GO:0032088,GO:0032386,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032508,GO:0032879,GO:0032947,GO:0032991,GO:0033036,GO:0034063,GO:0034517,GO:0034622,GO:0034641,GO:0035556,GO:0035770,GO:0035973,GO:0036211,GO:0036464,GO:0040008,GO:0042067,GO:0042623,GO:0042706,GO:0042994,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043433,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0044877,GO:0045165,GO:0045185,GO:0045570,GO:0045571,GO:0045926,GO:0046483,GO:0046530,GO:0046552,GO:0046620,GO:0046621,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048592,GO:0048609,GO:0048638,GO:0048640,GO:0048663,GO:0048699,GO:0048729,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051090,GO:0051093,GO:0051171,GO:0051179,GO:0051220,GO:0051235,GO:0051239,GO:0051241,GO:0051252,GO:0051276,GO:0051704,GO:0051716,GO:0060255,GO:0060341,GO:0060429,GO:0060627,GO:0060628,GO:0060828,GO:0061912,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070035,GO:0070646,GO:0070647,GO:0070925,GO:0071103,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090090,GO:0090304,GO:0090596,GO:0097159,GO:0140097,GO:0140098,GO:1901360,GO:1901363,GO:1901564,GO:1903506,GO:1905538,GO:1990861,GO:1990904,GO:2000026,GO:2000112,GO:2000156,GO:2001141 EggNOG free text desc. ras GTPase-activating protein-binding protein EggNOG OGs KOG0116@1,KOG0116@2759 Ec32 ortholog description Nuclear transport factor 2 Ec32 ortholog Ec-04_006210.1 EC 2.5.1.60,3.6.4.12,3.6.4.13 COG Functional cat. O Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko00002,ko01000,ko01006,ko03019,ko04131,ko04147 Exons 12 Model size 1713 Cds size 1677 Stop 1 Start 1
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927363.2450938-UTR-C-linearis_contig101:256949..256985 1622927363.2450938-UTR-C-linearis_contig101:256949..256985 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig101 256950..256985 + 1690879654.0153515-UTR-C-linearis_contig101:256949..256985 1690879654.0153515-UTR-C-linearis_contig101:256949..256985 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig101 256950..256985 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927363.254698-CDS-C-linearis_contig101:256985..257045 1622927363.254698-CDS-C-linearis_contig101:256985..257045 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 256986..257045 + 1690879654.0292866-CDS-C-linearis_contig101:256985..257045 1690879654.0292866-CDS-C-linearis_contig101:256985..257045 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 256986..257045 + 1622927363.2638218-CDS-C-linearis_contig101:258100..258196 1622927363.2638218-CDS-C-linearis_contig101:258100..258196 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 258101..258196 + 1690879654.037082-CDS-C-linearis_contig101:258100..258196 1690879654.037082-CDS-C-linearis_contig101:258100..258196 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 258101..258196 + 1622927363.2744899-CDS-C-linearis_contig101:258449..258561 1622927363.2744899-CDS-C-linearis_contig101:258449..258561 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 258450..258561 + 1690879654.0450406-CDS-C-linearis_contig101:258449..258561 1690879654.0450406-CDS-C-linearis_contig101:258449..258561 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 258450..258561 + 1622927363.2842226-CDS-C-linearis_contig101:258897..259067 1622927363.2842226-CDS-C-linearis_contig101:258897..259067 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 258898..259067 + 1690879654.0551023-CDS-C-linearis_contig101:258897..259067 1690879654.0551023-CDS-C-linearis_contig101:258897..259067 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 258898..259067 + 1622927363.29323-CDS-C-linearis_contig101:259376..259505 1622927363.29323-CDS-C-linearis_contig101:259376..259505 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 259377..259505 + 1690879654.0693889-CDS-C-linearis_contig101:259376..259505 1690879654.0693889-CDS-C-linearis_contig101:259376..259505 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 259377..259505 + 1622927363.3061664-CDS-C-linearis_contig101:260146..260353 1622927363.3061664-CDS-C-linearis_contig101:260146..260353 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 260147..260353 + 1690879654.0819957-CDS-C-linearis_contig101:260146..260353 1690879654.0819957-CDS-C-linearis_contig101:260146..260353 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 260147..260353 + 1622927363.55314-CDS-C-linearis_contig101:260569..260938 1622927363.55314-CDS-C-linearis_contig101:260569..260938 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 260570..260938 + 1690879654.0920777-CDS-C-linearis_contig101:260569..260938 1690879654.0920777-CDS-C-linearis_contig101:260569..260938 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 260570..260938 + 1622927363.5661087-CDS-C-linearis_contig101:261470..261605 1622927363.5661087-CDS-C-linearis_contig101:261470..261605 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 261471..261605 + 1690879654.1021442-CDS-C-linearis_contig101:261470..261605 1690879654.1021442-CDS-C-linearis_contig101:261470..261605 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 261471..261605 + 1622927363.5759895-CDS-C-linearis_contig101:261955..262095 1622927363.5759895-CDS-C-linearis_contig101:261955..262095 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 261956..262095 + 1690879654.1112046-CDS-C-linearis_contig101:261955..262095 1690879654.1112046-CDS-C-linearis_contig101:261955..262095 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 261956..262095 + 1622927363.5854185-CDS-C-linearis_contig101:262503..262586 1622927363.5854185-CDS-C-linearis_contig101:262503..262586 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 262504..262586 + 1690879654.1209433-CDS-C-linearis_contig101:262503..262586 1690879654.1209433-CDS-C-linearis_contig101:262503..262586 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 262504..262586 + 1622927363.5961199-CDS-C-linearis_contig101:262897..262958 1622927363.5961199-CDS-C-linearis_contig101:262897..262958 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 262898..262958 + 1690879654.1289485-CDS-C-linearis_contig101:262897..262958 1690879654.1289485-CDS-C-linearis_contig101:262897..262958 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 262898..262958 + 1622927363.6084263-CDS-C-linearis_contig101:263244..263359 1622927363.6084263-CDS-C-linearis_contig101:263244..263359 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 263245..263359 + 1690879654.1369424-CDS-C-linearis_contig101:263244..263359 1690879654.1369424-CDS-C-linearis_contig101:263244..263359 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig101 263245..263359 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig101.737.1
>prot_C-linearis_contig101.737.1 ID=prot_C-linearis_contig101.737.1|Name=mRNA_C-linearis_contig101.737.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=559bp
MSSKRGAPAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTK back to top mRNA from alignment at C-linearis_contig101:256950..263359+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig101.737.1 ID=mRNA_C-linearis_contig101.737.1|Name=mRNA_C-linearis_contig101.737.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6410bp|location=Sequence derived from alignment at C-linearis_contig101:256950..263359+ (Chordaria linearis ClinC8C monoicous)GGTAGGAACTGTAGTGTTAAGTGTTAGGAGGACAGG ATGTCCAGCAAGCG
GGGGGCGCCGGCGCCGGCAGTGGTCGGGAGCCACTTCGTCAAGCAG GTAA
GGAAAACACCCGACGTCAAGGGCATTCTGTATTCGTTTAACTACAATTCT
CGTCGAGAAAAAATGCGCAACCTTTGGTTCTAACAAGACCGAAGGATTTC
ATAGTTCGAGCCCGGCAAGAGAGCCTGGAACTGGCATGCAAAGGGGAACC
GTACGGGGGGGAATACGGGTTATCTAGACTGCTTCGTTGGCACGCAGCGT
ACATGAACATTTCGAAGACATCAACAAAGGGGGTGTTGTTCGAATATATG
CAAGATCCATAGCAGTGTTTTTCACTGGGTGCGTTGATACATGAATGTGA
TGGAACGCCCAATTGTCGTGTAGAAGTCGATCAGTTAGCCTGACCCAGAC
CTTCGGTGTCAACCTCTCGCTTTGAACCCTCACTTTCCTTCGATTCTCGA
AGTAGAGTAGCCGCCACTGAAAATCAAACACTGGGAGGGTACGTGCAACG
GTGTAACCAACCAGACGTTTTTTGTTTTCAACGACTGCAGCTTGCGCCAA
CAAGTTGCGTCTAGCAGCAAAGGACGTTTTTCATTTTTTCATGTCGACTT
TTTTGCAGGCAAGGGTCTCTTCGAGAGCTGTGACGAACAATATCCGATAA
TCAGGAAGTGCCGTATGACAGACCAAAAAGGTCAACCGTGCTTAGACAAG
GATCACCTCCGAGCTCTCGAGAGGAGGACAACAGGAGTAGCAGCGTACTT
GTATGATTTATCCGGTGCGGTCTGTTTCAACCCAAGCTCACCTATTTGTT
CACCGCCATGACGTGCCATCAATAGTGAGATTGCCGGTGGGATCATGTGT
GCACTTTTTCTGCCTGCTGCGACACTCGAAACTACGCTGCAGTATATTCG
GCTCACAGTTTTCCCCTTTGGAAACTGGTGTAAGCCGTCAGTAGATATCC
CATGTAGAAGGCATGGCTGGGATCCGGTTCCTCAATACAGGGTGCAGGGT
GAATCTCAGGTTGATTTTATCTTCTCGGCCCAGGTTTAGACGTGTTTTGT
TTTTTTTTTGCGTCACGCTCTCTTTGGCGTGTCGTTCTGTCGGGTCTGCA
GTACTATGGCGAGGTTTTGTCCAAGAAGCCGGTGGAGCTGCACCGCTTTT
ACAAGGACGAGAGTACGTTCTGCCACGCCTCTGGCACCAAGGAAGAG GTA
GGTCATGAGTCATGAGTCATGAGAGTGCCACCTTTCGATGCCAGCACTTT
CTGCATGTACATACAGTAGCCCGTGAGGACACTGGAGCGGCTCGCAGCCC
AGCCTCATATCTACAGACGACCACCACTACTCTGAAAAACCCAAGCCGGA
GCAGGCATTGCTCATGTCTGATGAGCTAGAATTGGCCTCGTGGCATGCTT
CTATTGCGCCCGTTTATCGATCGGTTGTTTGTGTTTTGTTGCGCACATAG
GAGCCCGTGTCTGGCCTAGCCGACATCAAGGCCAAGATCGAACACCTTGG
CCTGGGCGGCGCCACGGTCGACCTCGGCTGCGGTTCCGTCGACGCTCAGC
CCTCGGAAGGAG GTGAGAGAGAGCCATGAAAGAGTGAACCGCGATGGATT
CGACAGCACTCTAACTGGAGAGTTATTGATACAAGTCTTTACTGATAGTG
CGTAGTCAACCACCCTTGCTTTCTGCGAGAAGCTGTGCGGAAGCTCCTGT
TGTGTTTTTATTGGGACGTTGTAGGGCCCATTCAAGTCAATCCATGGTCA
TTTCTACCTTTTTGATGGCGATCGTTGGTTATGATATTACCACAGCAGTG
TGGCTGTGCCCTCTTGGCTTCCGGTGAGTTACCTATTCGTTCTAGGTCGT
TAGTTTGAATGAACCCTTGGCGTCGAATGGTGTACATCTACCCGGCAGGC
GGAGTGCTCCTCATGGTGACGGGTTCCATCACCATCGCGGACATGGACCC
GCGGCAGTTCTGCCAGACATTTTTCCTGGCTAGACAGCACCAGGACAACG
ACCGCCACAACTACTTCGTGCGCAACGATATCTTCCGTTTCCTGGATGTC
CTTCCCGAGGTGGTTCAG GTGCGTTATCTTATGTTGAATACGCACATCTG
TGCATGTAAGGGTGTACGTGATGTCACGTCGATCTGGTTACATCCAATTT
GAACTATTGGACAAACTTAGGTGCAATTTGATCCGCTGTCAGAGGTGGCG
GAGGCCCAGATTGCGCGATGGCGATACATCCCGGCTCGCCTTGCCTAGAC
GCACGCAGAGCTGCCGATGCAAGACTTATTTTTCGAGAGCAGGGCTTCGT
TTTTGGTTGCCTGTTGTCGCTGGTCTGAATCGATTCGATGTCGTTTTGCT
TCTACATACCACCCGTGGTACTGGTAGGCTGCCCTGAAGATCCGCGATGA
GGAAGAAGGCTCCACCGCTCGCTCTAGCCTTGCTGTCGTTGCCGAGGAAA
CCAAGGCGAAGCCGGCGATGACGATAGCGGCCGGGCAGGACGCGGCGGCC
CCTCAG GTACAGTACTTACCTTGCGCGCAATCCGCACCCAGCCGTGCTAG
GGAAGGGTACCGGACGCTTGCGCTTGACACGCCGCTGATGATGGGACGTA
TGTAGGCCACACACCCATGCTTGCAAGTATGGCCTTCGCGGTTGTGAAAT
TGAGCATTTTGAGCGTGCTACACATGGTACGGTATGGGTTGGGGTGTCCT
ATTGTTTTGGTCGCTCATGTGCTATCATGTGCTACATTTTTGTTTTTCGT
CCCATCAATGGCCTAGTCTGCCTTCTCCTCTTCGGTGCACACTACTCGTT
GCGGTGTAGGTGCACATATACGTTTCGGTGTACTGTCCCTACAACTAGCT
AGACGTACCATCCGGGGTCACACAGGAGGGGGTACCCGCGCCGTTTTTTT
TTTCTTCTTTTTCTTTTTCTTTTGTCCCCACCTACATACCTCCTGCGGTG
CATGTATCGGGCGGAACTGCCCATGCAGTCGGGCCACGTTTTTTTTTTTT
GCGTTCCAGCGGCGCCATAAGTTCGCAGATTACATGTTCTTGGTTCGCAT
TCCTCAGACTATTTATTCCTTTCTACTGGCCCTCTTCTCGTTCTCACTGT
ACCCCTCTACTCTTCTCCCCTCTCTGTATCGTGCTCCGATCCCTCAGAAG
GCTGCTGCTGCTGCTGCTGTCGGGGCTTCCCCGGTGGCGGCGGCGGCAGT
GCCCGAGTCTACGCCGCCTTCCATGGCGATGGGCGCTGCCCCCCCTTCCG
AGTCTCAGGTTGCGGCTTCGACTACTGGTGCTACTGCCGCCGCCGCTCCT
GCCGTGGAGACCGGTTTGGACAACGGCTCGGCTGGCGAGTCTTCGGCGCC
GAAG GTCGGTAACCTGTCGGTAACCTGTCGGTAACCTATCATATATGATA
CTATTCTTTGAATCCGAATTGGCTAAACAGGCTGTTGATTGGACCAGGCG
GGTCGACCACCCTCTATACGCTATACCGGTACACCTTTGTGTTGCACTAC
TCGTGCTGTTTGCTGACATACCTTTGACCACCTCTCTCGAAAAAACCTCT
TGTCTCCACCGCGTACCCAGATGGACTCTGCCGCCGCCGCCGCAACCGCC
ACCGCGCAGTCCTCCGAGCCGGCAGCTGCCGCCCCGCCCGCGTCTCCCCT
GCCACCCGCTGCGCCGACCGGCCCCCCGGCCCCCATGACCTACGCGTCTC
TCGCCAAGTCTTGGGCCACAGTTGCGGCAGACAGCGGAGTGGCGGTGGGT
GCTCCGGCTTCGGCGTCGCCCAGCGGTACCGGCAACGGGGTCGCCGCCAG
CAATGGCAATAGCAGCGGCGGCTGGGGCGGTGCTCCGGACGCGGCAGCGG
TGGGCGGGGCCGGGCTGACGATCGAACAGCCCGCCGGCCAGCCTGGCTCC
GGCATGGGGCATGGGTCCCGCCCGTCTTCTGCCGGCAAG GTGAGTGCGTG
CTACTGGTTAGGTAGGCGGGGACTGTGTGTGATTTCCTCGGGTTTGCCGA
GGACTGCTGTGCTGCGCCTGGTGTTCGCTTAGGGAGGGAAATAAGAAGTA
TGGGGTTTGACTAGAATATGTAGGCGGTGAGGTCAGTCGATCGAAAAGTT
GCTCGTTCATGCTGGGTTCCGGCGAAGAGCCTCACTACGTCGTTGCAAGC
ACAGCAGTGTCTATCTAAGCAACGTGATATCACGATTCTACATACGAAAT
CCCTTTTCTTCTCGCTTCAATCCACTCCACGGGGTCAGTTTTCGTCATTC
CAAACGTTTCGTGTTTTTTGGAGTGTTTGGTAGTCGAATGGACACTCATA
TGTTGTTAGGCCATCGTACTCATTCTGCCTCGCCAAATGTATCCAGCATG
ACAGCTTACCCGCACAGCAGTGTAGTGCCTCTATTCTCTCTCTACATACC
TACACGTTTGCTGTTTTCCATGAGTTCGTTGGTTCATCATTTCCCGCTCG
ACGTGTGACGTGTTTTGTCAGGGCCAGAAGGGGTCTGGAGCTTACATCCC
CCACCACGCGTCCCCCGCGGTGGCCGCCTCTGCTGCCGCTGCCCGTGAGG
CTGCTGCCGCCGGGAACGGGGAGATCATGCCCGCCACGTCGCTCTTCGTC
CGCAAG GTATGCAAGGACGTAATACGCGAGTTTGGAGTAGGCGATGTGAT
GTTTTGCCCTTTCTTTGGGGCTCTGATGCAGCAGAAAAAAGAAAGACTTT
TCTCTTGCCGCTGGCTTTCCGTGCAGTGTTGGGGTGCATGATTGAAGGAT
GAAGGATGCGCTCGACTACGTTTCTCTTGTCTTGTGGTGACTTGTGGTGA
TGGGCCTTGGCGACCGCACGGAGTTGCCAATAATGAAAGCACCAGTAGAA
ATGTTCCTGTCACCGAGCTTGCTTAGGTTTGACGATCCATCTTTGGCGTG
CCGTCGACTGATGCTAATTTTGTTTGTTGTATGTCGTGATGCACGTGTTC
GCTTAGGTGGACATGACGATCGACAGGGAAGAAATGATCGCCCATTTCTC
GGCCTACGGGGACGTGACGGGCATCAGCATGAACCCCACCCGCGGATACG
CGTTCATCGACTACCGGAACAACGAATGCGTCCAGACTGCCCTTAG GTAT
GAAGAAACCCTGGCGTGTCGCTTTGCTTCTTGTCCTCCTCTTTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCGTACCCCACTTCTGCTGAGGCC
AATTTCGGCGTGTTTTCCGCTGTAAAATGAGTAGTGTATCTTGTGGCAAA
ATGGAGAGTAGTTGTGTGCGTTGTTTCCGCAAGCAAGGTGAAGGCTAAGG
TTATTACCCGAGAGGAGAGGGCGACGGGTTTTACTCGATGCGTGGCTTCT
TGACTGACGCCGGCAGACAAGGCCTCTCAGTCCCCTCACATACCGTGTAC
GCGGATTTCCCGGGCCCTGCTTACCCTCCCTCTCTCCCCGCGAGCTGATC
GTCCGCTGCTACCACCCTGTTGTGTCCTCATTGTTTGTACCTACCCTATT
GCAGCACCAAGGAGCACTACGTGAACCGCAAGCTGCTGGTTGTTGAGGAG
CGCCACTCGCCCATGCTTCAGCGCAACTCGAGGGGCG GTGAGAAAAGCGC
TTGCGACGAATTGCTGGCTCACTAACATTCAAGCAGGCCCCCTCTTGCCC
CGTTTTCGTTGTTTGAAGCCTGTGCGTGTATCGGGGACTCCTATGCTTGC
TGCCTTTTTTCGGGTTTCGGATATCTGCGTCCCACCTCTGGTTACGTACT
TCTTAATCCGTAGTTCCCGTTTCAAGAAAAAGCTCATGACCACGATAGCT
TTTTTTTTTTTCGTCCACGTTGGCTTAGCTCACTGCTGTGCTCTCTTATT
TGCGACGCGGTTGCTATTCGTTTCTCCCCTCCTCGCGTCCACCACCAGAA
CACGGCGGCAGGGGAGGCCGCAACGGGGGCCGCGGGCGTGGAACGGGCAG
GGATGGCAG GTAAGGAGGGCCGGAAATGCTTGGTGACGTTAATTTCCGAC
GGAGAGCGTCCAGGCCTCACAAAAGTGTGGCATACCTAAAGGACGGCTGG
AATAGATAGACACACGCGGCGTGATTCTGGTGCTGCTGCTGGATCAGGTG
CTTGTATTTCCCGGTGTACGGTGTACGGTGTGCGATTTGGTCTGTTTTGG
TTCCACGTCGGAACCCGTCTATCTTTTTCTTACCTCGGCCTCATCACCGA
CATACCACTACTCGGATTATTCCCACACCTGCTCGCGCGTTTCAGGGATG
GGGGAGACCGGCGTTCCGCGGGGGGAAGGGGGGGGCGCGATCGTCCTGAC
GGTTCCAAAGACGGGGGTGGAAGTGGCTACAAGTCCAGAGGACGGGCAGA
GCCGGCTTAA back to top Coding sequence (CDS) from alignment at C-linearis_contig101:256950..263359+
>mRNA_C-linearis_contig101.737.1 ID=mRNA_C-linearis_contig101.737.1|Name=mRNA_C-linearis_contig101.737.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3354bp|location=Sequence derived from alignment at C-linearis_contig101:256950..263359+ (Chordaria linearis ClinC8C monoicous) back to top