mRNA_C-linearis_contig101.736.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig101.736.1 vs. uniprot
Match: D7FJI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJI0_ECTSI) HSP 1 Score: 368 bits (945), Expect = 3.170e-119 Identity = 203/249 (81.53%), Postives = 218/249 (87.55%), Query Frame = 1 Query: 1333 MRHLPRTVA--EGKDGAKASFASEGGPFSLASAQEQ-ESSSSQKKALARLSSSQDLFTSMEEARLRDAAAGALARSRKVAKQTWADIGHGGIGNDAGTDESSSFYADPSERFTTTNSERYAPLIKMKKIEKGQRSAGFCRQRPGDSATEASLRQQKSEDRSSKVRAHMERVSLSIKTEEVAARLKGERRVRGKARTRLRYNRWVNSMDNWLSDEVPKLADYDKRQFSVQNLRLRGGQQVHEALGGPRAM 2070
MRHLPRT A GKDGA SF SEGGPF+ A QEQ E S S K +LA LSS DLF+S+EE RL+DA AGALAR+RKVAKQTWADIGHGGIGNDAGTDESSSFYA PSERFTTTNSERYAPLIKMKKIEKGQRSAGFCRQR GDSATEAS R QKSEDRS K++ HMER+SLS+KTEEVAARLK ERRVRGKARTRLRY+RWVNSMDNWL DEVPKLADYDKRQF VQ+ R+RGGQQ+HEALGGP A+
Sbjct: 1 MRHLPRTSAMRRGKDGASTSFGSEGGPFAEAPLQEQGEGSLSPKTSLASLSSCHDLFSSLEEGRLQDATAGALARARKVAKQTWADIGHGGIGNDAGTDESSSFYACPSERFTTTNSERYAPLIKMKKIEKGQRSAGFCRQRLGDSATEASRRMQKSEDRSIKLKEHMERISLSVKTEEVAARLKEERRVRGKARTRLRYSRWVNSMDNWLGDEVPKLADYDKRQFPVQSSRIRGGQQMHEALGGPMAI 249
BLAST of mRNA_C-linearis_contig101.736.1 vs. uniprot
Match: D7FJI1_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJI1_ECTSI) HSP 1 Score: 303 bits (777), Expect = 7.350e-94 Identity = 182/330 (55.15%), Postives = 213/330 (64.55%), Query Frame = 1 Query: 145 LALAAGEMETERSAASDSYMTSTQMAYISGLHPPPTKVPVMDPYRHRQLLHDRWINRASQRLGDIATLKYGSI---REFFRLYDSNCDGVLDFDEFSEGITMCQLDHLFPRSLQRTLFDKIDTDKSGTIELDEFTRFLGRSEEKAVPPEELSVWQKQEKQRQADDAEAQSVTLQPIQDHRAQRIKNKLSHCLNKAVPNASAGLADNRTMFLKKQFAFLNEEAASRGTSLDDLVRALGPQGMDLGVKDEDLRLLVKEMDTNGDGNVNLKEFAAFINLDDHEPLYQPLFDGRRRN-----SMVEAAPPAESPEEYFFKARADELHSVAVPSK 1110
+A A E + E S SDSY+TSTQMAY S + + + D TL S R FF C + T+C + KSG IELDEF FLG+SE K + S QK++ Q+QADD EA+SVTLQPIQDH+AQRIKNKL+HC+ +AVPNAS GLADNRTMFLKKQFAFL+E+AASRG SL++LV+ALGP+GM+LGV DEDLRLLVKEMDTN DGN+ +KEFAAF+NLDDH+PLYQPLFDGRRRN +MVE APP ESPEE FFKARAD LHSVAVPSK
Sbjct: 1 MAAAVDETQMESSGVSDSYITSTQMAYTS--------------------------DGFNVQARDSVTLPPSSTAASRSFF-----GCT--------TPTATVCST--------------STSSAKSGGIELDEFADFLGQSETKGASSGDPSALQKEKTQQQADDVEARSVTLQPIQDHKAQRIKNKLAHCVQQAVPNASTGLADNRTMFLKKQFAFLSEDAASRGISLENLVQALGPRGMNLGVNDEDLRLLVKEMDTNCDGNITVKEFAAFLNLDDHDPLYQPLFDGRRRNVNILQAMVEQAPPVESPEEEFFKARADHLHSVAVPSK 277
BLAST of mRNA_C-linearis_contig101.736.1 vs. uniprot
Match: A0A7R9YBQ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBQ5_9STRA) HSP 1 Score: 124 bits (311), Expect = 1.770e-26 Identity = 73/235 (31.06%), Postives = 130/235 (55.32%), Query Frame = 1 Query: 307 INRASQRLGDIATLKYGSIREFFRLYDSNCDGVLDFDEFSEGITMCQLDHLFPRSLQRTLFDKIDTDKSGTIELDEFTRFLGRSEEKAVPPEELSVWQKQEKQRQADDAEAQSVTLQPIQDHRAQRIKNKLSHCLNKAVP-NASAGLADNRTMFLKKQFAFLNEEAASRGTSLDDLVRALGPQGMDLGVKDEDLRLLVKEMDTNGDGNVNLKEFAAFINLDDHEPLYQPLFDGRR 1008
++RA RL + LKYGS+R+FF +D N +G + +EFS L+ L PR QR +F+++D D+SG+++L+EF L R + P + R ++A + V L+ + RA+ +++ L + + + + + + +T +L F ++++ S D+ ALGP G+++ K++DLR++ + MD N D ++ EF F+N+DD +P Y P +DGRR
Sbjct: 164 LDRAIGRLQQLLVLKYGSVRDFFHTFDENHNGKITLEEFSRTFKRRNLERLIPRREQRLIFERLDADQSGSLDLEEFKSALTRETAFSQPLD-----------RMREEAREKGVKLRRT-NPRAELVRDALLQKVTQRLRMSKESDSVERKTAYLLNIFKQIDKDMTGL-LSADEFAAALGPGGLNVCAKEDDLRMVFEAMDVNEDERISYSEFIDFLNVDDIDPEYNPFYDGRR 385
BLAST of mRNA_C-linearis_contig101.736.1 vs. uniprot
Match: A0A7S2DS74_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DS74_9STRA) HSP 1 Score: 102 bits (253), Expect = 1.360e-18 Identity = 73/242 (30.17%), Postives = 122/242 (50.41%), Query Frame = 1 Query: 307 INRASQRLGDIATLKYGSIREFFRLYDSNCDGVLDFDEFSEGITMCQLDHLFPRSLQRTLFDKIDTDKSGTIELDEFTRFL----GRSEE---KAVPPEELSVWQKQEKQRQADDAEAQSVTLQPIQDHRAQRIKNKLSHCLNKAVPNASAGLADNRTMFLKKQFAFLNEEAASRGTSLD--DLVRALGPQGMDLGVKDEDLRLLVKEMDTNGDGNVNLKEFAAFINLDDHEPLYQPLFDGR 1005
I +L +A KYGS+ E FR +D N DG L +EFS+ ++ L+ LFPR+ QR +F ID D S ++ LDEF F+ G + + K +PP V + S +L +D I + N + G + T+ + F +++ + SLD +++RALGP+ ++L + D+++ LV+ MD N D +V+ +EF F+++ D +P Y +F+ R
Sbjct: 154 IAHVRDKLAALAVEKYGSVTEMFREFDDNKDGELSLEEFSQALSKRHLEKLFPRTDQRIIFKHIDADFSDSVALDEFQGFMDSAVGENYDLFTKTLPPNTEPV-------------KKLSASLTATKDKIVAGIFER-----NNQMKLPDGGDSAKETVI--RAFKHFDKDMSG---SLDRQEIIRALGPEHLNLKISDQEVLNLVEAMDENSDNSVSYREFTEFLDIHDIDPAYNLMFESR 372
BLAST of mRNA_C-linearis_contig101.736.1 vs. uniprot
Match: A0A7S3ZVU3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZVU3_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 7.120e-18 Identity = 126/474 (26.58%), Postives = 192/474 (40.51%), Query Frame = 1 Query: 295 HDRWINRASQRLGDIATLKYGSIREFFRLYDSNCDGVLDFDEFSEGITMCQLDHLFPRSLQRTLFDKIDTDKSGTIELDEFTRFLGRSEEKAVPPEELSVWQKQEKQ-RQADDAEAQSVTLQPIQDHRAQRIKNKLSHCLNKAVPNASAGLADNRTMFLKKQFAFLNEEAASRGT-SLDDLVRALGPQGMDLGVKDEDLRLLVKEMDTNGDGNVNLKEFAAFINLDDHEPLYQPLFDGRRRNSM----VEAAP-PAESPEEYFFKARADELHSVAVPSKILDTEVRMERDRIAQEVKAKLSRGRFARPRSPAWTVGEDVVTVSTPSGRTVVDIWDLPLPTRHLSSVKRSLTSSMRHLPRTVAEGKDGAKASFASEGGPFSLASAQEQESSSSQKKALARLSSSQDLFTSMEEARLRDAAAGALARSRKVAKQTWADIGHGGIGNDAGTDESSSFYADPSERFTTTNSERYAPLI 1695
++R N+A +RL +A KYG +R+ F D N D L DEFS + L+ LFPR QR ++D ID D S ++E++E +L + P + + EK R +D +TL P RI +++ + +A L + + Q + + GT S ++V ALGP+ ++LGV D ++R LV +D +K+F + + DH P + P FD R R + AAP E+ +E K++ + +S + K T A + GR R T+G +V D + PL T RSL + R AE S++ K+AL S+ +F M R + A G R W G GG G S Y DP++RF TT + Y P+I
Sbjct: 170 NERVTNKARERLAQLALHKYGGVRQMFDCLDRNNDKELSLDEFSHALKRRNLEKLFPRDQQRLVYDAIDKDFSESVEVEEMVDWLEKD------PRAAAARRANEKLLRSQEDRNIGEITLPPHLREVKDRIADEV-YKRTRATKTEEGNLRQDEYLINGLQNWDVQNRSKGDGTLSPREIVDALGPKYLNLGVPDAEVRELVDYLDLGE--QCKIKQFVKKLEIGDHAPDFNPFFDARDRELVSLKRTIAAPWQWEATDELLAKSKELQGYSTSPIKKRAQT--------------ASPTYGRRRR------TLGPEV------------DRYVRPLCT------SRSLERHHEIMSRDRAE------------------------HSTAVAKEALTPCDDSEGVFDDMRRTRTQQMA-GICPRFVPQEPTDWTRTGLGGDG----MSPKSGVYLDPTQRFGTTTNRYYTPII 567 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig101.736.1 >prot_C-linearis_contig101.736.1 ID=prot_C-linearis_contig101.736.1|Name=mRNA_C-linearis_contig101.736.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=684bp MPSVGTSTYSQRLDSISRSGWEKENRRKSTGGIEYSPDNLALAAGEMETEback to top mRNA from alignment at C-linearis_contig101:243430..252323- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig101.736.1 ID=mRNA_C-linearis_contig101.736.1|Name=mRNA_C-linearis_contig101.736.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=8894bp|location=Sequence derived from alignment at C-linearis_contig101:243430..252323- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig101:243430..252323- >mRNA_C-linearis_contig101.736.1 ID=mRNA_C-linearis_contig101.736.1|Name=mRNA_C-linearis_contig101.736.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4104bp|location=Sequence derived from alignment at C-linearis_contig101:243430..252323- (Chordaria linearis ClinC8C monoicous)back to top |