mRNA_C-linearis_contig101.727.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig101.727.1 vs. uniprot
Match: D8LN84_ECTSI (Ribosomal protein rpl30 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN84_ECTSI) HSP 1 Score: 217 bits (552), Expect = 1.620e-67 Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1 Query: 1 MAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILRQGAEA 333
MAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILRQGAEA
Sbjct: 1 MAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILRQGAEA 111
BLAST of mRNA_C-linearis_contig101.727.1 vs. uniprot
Match: A0A835YXX2_9STRA (Ribosomal protein rpl30 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXX2_9STRA) HSP 1 Score: 180 bits (457), Expect = 3.200e-53 Identity = 87/106 (82.08%), Postives = 100/106 (94.34%), Query Frame = 1 Query: 1 MAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILR 318
MAP KK+KK IES+N RLQLVM+SGKASLGYK T+K MR+++AKM++ISNNCPPLRKSEIEY+A+LAKC VHHY+GSNTDLGTACGKYFRVSVL+ITDAGDSDILR
Sbjct: 1 MAPIKKAKKTIESINTRLQLVMRSGKASLGYKQTLKCMRTSKAKMIIISNNCPPLRKSEIEYYALLAKCNVHHYSGSNTDLGTACGKYFRVSVLAITDAGDSDILR 106
BLAST of mRNA_C-linearis_contig101.727.1 vs. uniprot
Match: A0A812PA55_SYMMI (RPL30 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812PA55_SYMMI) HSP 1 Score: 173 bits (438), Expect = 2.330e-50 Identity = 82/108 (75.93%), Postives = 102/108 (94.44%), Query Frame = 1 Query: 1 MAP--GKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILR 318
MAP GKK+KK +ES+N+RLQLVM+SGKASLGYK+TIK++R+T+AK+V+IS+NCPPLRKSEIEY+AMLAKC VHHY G+N+DLGTACGK++RVS+LS+TD GDSDILR
Sbjct: 1 MAPAAGKKTKKTVESINSRLQLVMRSGKASLGYKTTIKTLRNTKAKLVIISSNCPPLRKSEIEYYAMLAKCTVHHYAGTNSDLGTACGKFYRVSMLSVTDGGDSDILR 108
BLAST of mRNA_C-linearis_contig101.727.1 vs. uniprot
Match: A0A7S3HF33_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HF33_9STRA) HSP 1 Score: 165 bits (418), Expect = 2.430e-47 Identity = 76/104 (73.08%), Postives = 99/104 (95.19%), Query Frame = 1 Query: 10 GKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILRQ 321
GKK+KKA+ES+N+++QLVMKSGK +LGYK+TIK++R+ +AKMVLI++N PPLRKSE+EY+AMLAKC VHHY G+N++LGTACGK++RVS++SITDAGDSDILRQ
Sbjct: 9 GKKTKKAVESINSKVQLVMKSGKTALGYKTTIKALRANKAKMVLIASNTPPLRKSEVEYYAMLAKCVVHHYAGNNSELGTACGKFYRVSMVSITDAGDSDILRQ 112
BLAST of mRNA_C-linearis_contig101.727.1 vs. uniprot
Match: A0A261XVZ6_9FUNG (60S ribosomal protein L30-1 n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XVZ6_9FUNG) HSP 1 Score: 164 bits (416), Expect = 4.140e-47 Identity = 80/105 (76.19%), Postives = 96/105 (91.43%), Query Frame = 1 Query: 1 MAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDIL 315
MAP KKSKK++ES+N+RLQLVMKSGK +LGYKST+KS+R+ +AK++LI+ NCPPLRKSEIEY+AML+K VHHYTG+N +LGTACGK FR SVLSITDAGDSDIL
Sbjct: 1 MAPVKKSKKSVESINSRLQLVMKSGKYNLGYKSTLKSVRAGKAKLILIAGNCPPLRKSEIEYYAMLSKTGVHHYTGNNIELGTACGKLFRCSVLSITDAGDSDIL 105
BLAST of mRNA_C-linearis_contig101.727.1 vs. uniprot
Match: A0A1Y1Z8Q1_9FUNG (60S ribosomal protein n=4 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Z8Q1_9FUNG) HSP 1 Score: 164 bits (415), Expect = 6.220e-47 Identity = 77/106 (72.64%), Postives = 98/106 (92.45%), Query Frame = 1 Query: 1 MAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILR 318
MAP KKSKK++ES+N+RL LVMKSGK++LGYKST+KS+R+ +AK++++S NCPPLRKSEIEY+AML+K +VHHY G+N +LGTACGKYFRV VL+ITDAGDSDIL+
Sbjct: 1 MAPIKKSKKSVESINSRLALVMKSGKSNLGYKSTLKSIRNGKAKLIILSGNCPPLRKSEIEYYAMLSKTSVHHYNGNNIELGTACGKYFRVGVLAITDAGDSDILK 106
BLAST of mRNA_C-linearis_contig101.727.1 vs. uniprot
Match: A0A7S2USR9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USR9_9STRA) HSP 1 Score: 165 bits (417), Expect = 1.070e-46 Identity = 81/113 (71.68%), Postives = 99/113 (87.61%), Query Frame = 1 Query: 1 MAPGKK--SKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILRQGAEA 333
MAP KK SKK +E+MN++LQLVMKSGKASLGYKS+IK++R+ +AK+VL+S NCPPLR+SEIEY+AMLAK VHHY G+NTDLGTACGKYFRV VL +T+AGDS+ILR E+
Sbjct: 38 MAPSKKVSSKKTVENMNSQLQLVMKSGKASLGYKSSIKALRNNKAKLVLVSKNCPPLRRSEIEYYAMLAKVGVHHYAGNNTDLGTACGKYFRVGVLCVTNAGDSEILRSIPES 150
BLAST of mRNA_C-linearis_contig101.727.1 vs. uniprot
Match: A0A7S1BKT7_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKT7_9STRA) HSP 1 Score: 162 bits (410), Expect = 3.370e-46 Identity = 78/110 (70.91%), Postives = 100/110 (90.91%), Query Frame = 1 Query: 1 MAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILRQGAE 330
MAP KK+KK ESMN+RL+LVMKSGKA+LGYK+TI+S+RS++AK++L+++NCPPLRKSE+EY+AMLAK VHHY+G+NT+LGTACGK+F SVL++ DAGDSDIL GAE
Sbjct: 1 MAP-KKAKKTTESMNSRLKLVMKSGKATLGYKATIRSLRSSKAKLILVASNCPPLRKSELEYYAMLAKTHVHHYSGNNTELGTACGKFFNCSVLTVLDAGDSDILTVGAE 109
BLAST of mRNA_C-linearis_contig101.727.1 vs. uniprot
Match: L8GX53_ACACA (60S ribosomal protein, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GX53_ACACA) HSP 1 Score: 162 bits (410), Expect = 3.580e-46 Identity = 80/107 (74.77%), Postives = 92/107 (85.98%), Query Frame = 1 Query: 1 MAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILRQ 321
M KK KKA ES+N+RL LVMKSGK +LGYKST+KS+R +AK+++IS NCPPLRKSEIEY+AMLAK VHHYTG+N DLGTACGKYFRVS LSITD GDSDI+RQ
Sbjct: 1 MVSTKKQKKAQESINSRLALVMKSGKYTLGYKSTLKSLRQGKAKLIIISTNCPPLRKSEIEYYAMLAKTGVHHYTGNNIDLGTACGKYFRVSSLSITDPGDSDIIRQ 107
BLAST of mRNA_C-linearis_contig101.727.1 vs. uniprot
Match: A0A7S2AKD1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AKD1_9STRA) HSP 1 Score: 163 bits (412), Expect = 3.600e-46 Identity = 78/105 (74.29%), Postives = 95/105 (90.48%), Query Frame = 1 Query: 1 MAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDIL 315
MAPGKKSK+A+ES+N+RLQLVMKSGKA LGYKST+KS+RS + KMV++SNN PPL+KSEIEY++MLAK V HY+G+N+DLGTACGKYFRV +SI DAGDSDI+
Sbjct: 23 MAPGKKSKRAVESINSRLQLVMKSGKAELGYKSTLKSLRSGKCKMVILSNNTPPLKKSEIEYYSMLAKVTVTHYSGTNSDLGTACGKYFRVGTVSIIDAGDSDII 127 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig101.727.1 >prot_C-linearis_contig101.727.1 ID=prot_C-linearis_contig101.727.1|Name=mRNA_C-linearis_contig101.727.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=112bp MAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNback to top mRNA from alignment at C-linearis_contig101:173923..176503+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig101.727.1 ID=mRNA_C-linearis_contig101.727.1|Name=mRNA_C-linearis_contig101.727.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2581bp|location=Sequence derived from alignment at C-linearis_contig101:173923..176503+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig101:173923..176503+ >mRNA_C-linearis_contig101.727.1 ID=mRNA_C-linearis_contig101.727.1|Name=mRNA_C-linearis_contig101.727.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at C-linearis_contig101:173923..176503+ (Chordaria linearis ClinC8C monoicous)back to top |