mRNA_C-linearis_contig101.723.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	302.4
Seed ortholog evalue	1.7e-79
Seed eggNOG ortholog	2880.D7G071
Hectar predicted targeting category	signal peptide
EggNOG OGs	2F1MW@1,2T2MF@2759
Ec32 ortholog description	Beta-grasp domain
Ec32 ortholog	Ec-05_004050.1
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	5
Model size	2385
Cds size	630
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927361.4767904-UTR-C-linearis_contig101:130879..131906	1622927361.4767904-UTR-C-linearis_contig101:130879..131906	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig101 130880..131906 -
1690879652.8486953-UTR-C-linearis_contig101:130879..131906	1690879652.8486953-UTR-C-linearis_contig101:130879..131906	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig101 130880..131906 -
1622927361.546959-UTR-C-linearis_contig101:134836..135564	1622927361.546959-UTR-C-linearis_contig101:134836..135564	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig101 134837..135564 -
1690879652.9258761-UTR-C-linearis_contig101:134836..135564	1690879652.9258761-UTR-C-linearis_contig101:134836..135564	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig101 134837..135564 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927361.4866025-CDS-C-linearis_contig101:131906..131967	1622927361.4866025-CDS-C-linearis_contig101:131906..131967	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig101 131907..131967 -
1690879652.8687744-CDS-C-linearis_contig101:131906..131967	1690879652.8687744-CDS-C-linearis_contig101:131906..131967	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig101 131907..131967 -
1622927361.4975317-CDS-C-linearis_contig101:132396..132560	1622927361.4975317-CDS-C-linearis_contig101:132396..132560	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig101 132397..132560 -
1690879652.8837507-CDS-C-linearis_contig101:132396..132560	1690879652.8837507-CDS-C-linearis_contig101:132396..132560	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig101 132397..132560 -
1622927361.510962-CDS-C-linearis_contig101:132885..133014	1622927361.510962-CDS-C-linearis_contig101:132885..133014	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig101 132886..133014 -
1690879652.894676-CDS-C-linearis_contig101:132885..133014	1690879652.894676-CDS-C-linearis_contig101:132885..133014	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig101 132886..133014 -
1622927361.5243247-CDS-C-linearis_contig101:133665..133765	1622927361.5243247-CDS-C-linearis_contig101:133665..133765	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig101 133666..133765 -
1690879652.9045932-CDS-C-linearis_contig101:133665..133765	1690879652.9045932-CDS-C-linearis_contig101:133665..133765	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig101 133666..133765 -
1622927361.534637-CDS-C-linearis_contig101:134660..134836	1622927361.534637-CDS-C-linearis_contig101:134660..134836	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig101 134661..134836 -
1690879652.9153543-CDS-C-linearis_contig101:134660..134836	1690879652.9153543-CDS-C-linearis_contig101:134660..134836	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig101 134661..134836 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig101.723.1	prot_C-linearis_contig101.723.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig101 131907..134836 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig101:130880..135564-
coding sequence from alignment at C-linearis_contig101:130880..135564-

protein sequence of mRNA_C-linearis_contig101.723.1

>prot_C-linearis_contig101.723.1 ID=prot_C-linearis_contig101.723.1|Name=mRNA_C-linearis_contig101.723.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=210bp
MRSSRAIAAGAVAVLAVLLCHHRGQAFFVGNPAAGLLDRAGYSRNQVQAH
RSAGVIRSRLTATMTMTPETTEDTVSVLNDDGTRKTGEQIREEFFMAALT
GQERGLPPGSYLNDTVDEGPDVAQVSVVWQPYEDKVSAPAGSNLLRSALG
CGAMVLDNTFCLTGQCEACMAEVDGNVVLSCMVPVPNDGRTDVEALVCDS
DAAWDDMMV*

mRNA from alignment at C-linearis_contig101:130880..135564-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig101.723.1 ID=mRNA_C-linearis_contig101.723.1|Name=mRNA_C-linearis_contig101.723.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4685bp|location=Sequence derived from alignment at C-linearis_contig101:130880..135564- (Chordaria linearis ClinC8C monoicous)
AGGTGACCTCACCCCCCTTCTCTTAGTGTGAGAGCATGGACCCAGCGCTC
GAGTCTGTGCGTGTGCACTCGCCCTTGACTTGAGGCAACATGCGTACACA
GCAGTAGGCACTAATGGCGTGCTTTGTGTGTCCGAAAAGCGCGCTGCGTG
CACCTAAAATATATAAGCTCTCGCTGTAGGGCATAGATCTACATAGTCTA
CACCTCGACATCATGTTGTTCGCGGAAGAGTCGAAGTTTCCTCGTCGATG
TGCCTCTCTCTCTCTCACTCTCGTGAGCTGCTGCTATTGCCTTTCTGCTG
GGCGGTTGGCGGCTTCCGTGGAGCGCTATTGCATAGCTTGTGGTTGGAGA
GCGTAGAACTGCTGTTGTCAAGTGTAGATTTGAACGTCTTTTGTATGAAG
GAAAAACTCGGTCGATCAGCGCATATTTAATTTTTAATTCCCCCGCTCCT
CTCTGTCGATCTTCTCTCGTGCTTGTTTACCTGCACGCCGCCGTCTGCTT
TTCAGCGAAAGACAGCAGTGCGCACCGTCTCCGAGCACCTCCTTTATGAC
ACAACCTTTTGTAGTTGCGTCATTGGCGGCTTAAAATCAGGAATAGACTG
TAGACTACGTCTCCTTTCCTTGGCGTCGTGCACAGTTCGCGACTGCTGTA
CTTAGGTACTCCTGCTGCACCTCTCCCAGTTCTGTTCCCATCACTAGACG
TCAGTTGCTGCAGCGGCACAAGCTTTAAATGAGGTCTTCCAGGGCAATCG
CGGCGGGTGCCGTGGCGGTGTTGGCGGTGCTCTTGTGCCACCACCGTGGG
CAGGCGTTCTTCGTTGGGAACCCGGCCGCTGGGCTGCTGGATCGAGCAGG
CTACTCGAGGAATCAAGTGCAGGCGCATCGATCAGCAGGCGTTATCCGCT
CCAGGTGGGTACTTGTACAAGCTGCCTGTGACAATCATCGTATCTCTCAC
TGCGATCTCGATCGGTTACCATGTATGATACGCGCATATTTATGGACCAA
GAACAGCCCCTACAGCAGTACTGTGGTTCGACACGTGTATCATATTTTCT
TGTTCCCTTTTGACCGCCACTTCAATGTTTGGTTCGTGAGCACCTTGACT
CGCAAGCTGGACAGTCCTCCGCTGCTGTGTAGGCTGGCCCTTCACGCGAT
ATTGGTCCGCGCCTCATTGCTGGCGTGCAGCGCTAAGAACTTTCGTGTTG
TACCTACTGGGGTTTTGATTGTTGACCATGCATGCGGGTTGTGTGGGTGC
ACGCATATTGTCAGCGCTTACAAACGTATGCAGGAGGTTCTTTGTCAACC
GGCTGTCTTGTCAACCAAAAGGGCCATACAATTGACCAGCCTTGTACCGT
TAGCAAAACTGTCTTCGAAGAGGGTGCCGTCGTTAGCACACCCTCTCCGC
TCGGTAAGAAAAATGTCAAGCATGCTGATGTTCGTGACCCTGCCCTGGAC
CACGATAGGGTTTCCTCGCTTCAACAGCGGCGTCCGGGGTTGTGGCCCGA
CATATTGTGCTCGCAATAACCTTGCATCTTCGTTTGATGAGCAGCAGTGA
AGCATGCTATCACGTCCACACATATGCTACTACAGTCAACGACCCCGCTC
ACATTAAAAGGAGATAATTTGGACTGGCTGGGAAGAATACTGCTGTGCAT
CTGTTTGGGTGAACTGCTGGACGAAAGATGCTTGTTCTTGTCAAAAGGGA
CGTATGTATCCGGCCTGAAGTCCATGAGCCTCGCCCAATTTGTTCGCATC
CGCCCCACACCTTCACGTGGTGGTTAATGATTGTGGTTGCGTGTTCCAGA
TTGACGGCTACGATGACGATGACGCCAGAAACAACGGAAGATACAGTGAG
CGTGCTGAACGATGACGGCACCAGGAAGACAGGGGAGCAGATCCGAGAGG
TGAGGAACATACCTTGTTCCATACTTCTTTGTGGAATACTCACAGCAGCC
GCAGTAGACACGCAGCAGAAGCAGTGGCCGTAGCGTGTAGCGTATGTCGT
CGTTAGCGTGTTGTCGTCACGAAGAACTCCTGCACAAAGCGGAGGGTAGG
TCTATTGGATGCGATGCCACGATTTACACAACCATAAAATTCAATTGTGT
TAACGTTGTCGTGCGCTGCTTGTTACAAAAGGTTGTCAACAAACGTATTT
TTAATAGTTGCGCAGGACTTTGTTGTGGTTGGGCTTGTAAATGCTCTGCA
ATATACACTGGTATGGAGTACATCGTTCGTCGAGAACGACTGAGCCTTTC
TCCCCTTCAACCCGGAAGCAATAGCCCGCAGCATGGGTGGCAGAGAGACC
TCGAGGTAGTGTGAGGATGTTTTCTGAGTATGAAGACGAATCCCACCTGT
AAGGCCAAACTACCCTCGCCATAGAGGGTGAGAGAAAGAAAAACTGAAAC
TTAAAACTTGTTTAGACTAGGGCCAGCTGCGCGAAAACGAAGGGGGGTAA
ACGGGATGTGTAACTAGAAAAAAATGGAGTTTCATTTCAATGTCAATGTG
CCAACACGCCGTCAACGTTGTGGCTCTGCTGCAAACACCCATTACGGCAG
GAGTTTTTCATGGCAGCGCTGACGGGCCAAGAGCGAGGGTTGCCGCCGGG
GTCTTATCTCAACGACACTGTCGACGAAGGGCCCGATGTGGCTCAAGTTT
CCGTCGTATGGCAGCCTTACGAGGACAAGGTGAGCGGGCCGGGCCCGCTG
GCTTCACGTTCACAACTGTGAACGTTCCTATGAAAAACGTTCGGGCGAAG
TTGTACCCACCCGTGTGTTGTGTTCCGTTGATTCTCGGTGCACTGCCTGC
CTTGCTGTATCGGTTTTGTCGCTTGCTTGCCTGTTTTAGTCTATCGTAAA
TTTAGCTATTGCTTCCCTCAGGCGCTGTACCCCAGCCGGAAGTCAACGTA
GCTTTCTGTGTTTTTTTCTTTCAAAGCACAATTTTTTTTGTACTGACGAC
ACGACAGCGTTTTTCTCGCTAGGAGCAACCTTAACACCCCCCCCCCCAAA
GTAGGTATCTGCCCCGGCAGGGTCTAACTTGCTTAGGAGCGCACTCGGCT
GCGGAGCGATGGTGTTAGACAACACCTTCTGTTTGACGGGCCAGTGCGAG
GCATGCATGGCTGAGGTGGACGGAAATGTGGTACTGTCCTGCATGGTGCC
TGTGCCCAATGATGGAAGGTGTGAAAAAAATAAGCGACGATGACGTTGCT
GTGAAACAATTTGATCGTCCCGCCCTCTCCCCCTAGAACGACCTGGACTG
TTAGCTGAAATTGGTGAGGTCTGGAATGACAAGCCCGTGCAATGGTCGCC
CGGCACCTGGCGACACAAACATCTCAACACATCTCAGGGTCCATGTCACA
TCCTACGTGACAATTCGTCGTAGCGATGGTGAATGGTGGGTTTGACACCT
GTGGCCATGCCAGTGCCAATCAGTGCTCGTGGTGAGGATGGTTGGGAAAT
GGTCTACCGGGTACACGGTCGTGCACACATACGTCTGGCAAACCAAGCTG
CCTCCCGGTTTTTGTCTCGCCACCAGAATTCTCTTCAGCCTGTTCTGTTT
TTGCAATGTCTTCTCCGTTCTTTATCTCTCAATCTTGTGTATTTCAGGAC
CGATGTGGAGGCCCTGGTGTGCGATTCCGACGCCGCTTGGGACGACATGA
TGGTGTAAGCGCGTTGACCTTCTTTTGGCGGCGTTACCGGATGCCAGGGG
AATCCTGTACGAAGCAAGCGGTTGGGTTGAAGGAGATCTACAGTAGCGGT
TGGGTTGAAGAGACGCATGTGTGGGATCTGCGTCTTTTCCATGTGATTCA
GAGAACTGAGACGTGCTAACCTCCGAATAGTCAAGTCGATAGTGCAATGT
TGCGTAACACTCAAGACCCCCCTTTAGACACTGGCGCGGATGCGTCGATA
CAGATTTTCCACGTTTTGTTTAGGCGAAGGTTGTCCTGCTCTTGAAAACG
TATCTACTGCTGTGCAGAGGAAATCGCCTCTTTGTTCTGTCTTGCGGTGT
TGTATTTTGGCCTCTGTTTTTGCGTTTTTCTGGGACCTCATTTCAGATTG
TACGGTTATGTCCATGGGGTGCTACATACTCAGAGAGACGACGCTGCCCT
GATTTTGTCTAATTGGGCATAGGCGGGCGTCGCATTTGTTTTGTTTGTCC
TGTACTTCTCCGTTTGCCCGGCGTCTGTTGCTGTTTTGCCGTTGGTCGGC
TATTTCGTTGTTCTTTGGGTGCTGTTTTCTGTTTTGTGCGAGAGCACGGT
ACAGCAGAAGTCATGATGAGAGCAGCCGCTGGTACAGCAGTAGTCACACG
ATGGCATGCACGGCAGGAATATCTGCGCCTAATTGTTACTTGGCTGGAGT
TTCAGCTGTTGCCCGCCTATTTCGTGAGGGGGTCCCAACGTGCAAATGTG
TTTCATGTTGGCGTTTCCATCAACAAATCTCAACCGCTTGTAAATCAAAT
TCAAATCTTGATCTTTTCACGAGCATGATGACTACTGCTGTAGATGCGCG
GTACCATGTAGGTTTTGTCTTGGTCTCGTGCAACTGGTCGTTGTGGACTA
CCAATGGCGGTTGGAGTTTCAGCTGTTGCCCGCCTTTTTCGTGAGGGGGT
TCTTACGTGCAAATGTGTTTCATGTTCGCGTTTCCATCAACAAATCTCAA
CCGCTTGTCAATCAAATTCAAATCTTAATCTTTTC

Coding sequence (CDS) from alignment at C-linearis_contig101:130880..135564-

>mRNA_C-linearis_contig101.723.1 ID=mRNA_C-linearis_contig101.723.1|Name=mRNA_C-linearis_contig101.723.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1260bp|location=Sequence derived from alignment at C-linearis_contig101:130880..135564- (Chordaria linearis ClinC8C monoicous)
ATGAGGTCTTCCAGGGCAATCGCGGCGGGTGCCGTGGCGGTGTTGGCGGT
GCTCTTGTGCCACCACCGTGGGCAGGCGTTCTTCGTTGGGAACCCGGCCG
CTGGGCTGCTGGATCGAGCAGGCTACTCGAGGAATCAAGTGCAGGCGCAT
CGATCAGCAGGCGTTATCCGCTCCAGATGAGGTCTTCCAGGGCAATCGCG
GCGGGTGCCGTGGCGGTGTTGGCGGTGCTCTTGTGCCACCACCGTGGGCA
GGCGTTCTTCGTTGGGAACCCGGCCGCTGGGCTGCTGGATCGAGCAGGCT
ACTCGAGGAATCAAGTGCAGGCGCATCGATCAGCAGGCGTTATCCGCTCC
AGATTGACGGCTACGATGACGATGACGCCAGAAACAACGGAAGATACAGT
GAGCGTGCTGAACGATGACGGCACCAGGAAGACAGGGGAGCAGATCCGAG
AGATTGACGGCTACGATGACGATGACGCCAGAAACAACGGAAGATACAGT
GAGCGTGCTGAACGATGACGGCACCAGGAAGACAGGGGAGCAGATCCGAG
AGGAGTTTTTCATGGCAGCGCTGACGGGCCAAGAGCGAGGGTTGCCGCCG
GGGTCTTATCTCAACGACACTGTCGACGAAGGGCCCGATGTGGCTCAAGT
TTCCGTCGTATGGCAGCCTTACGAGGACAAGGAGTTTTTCATGGCAGCGC
TGACGGGCCAAGAGCGAGGGTTGCCGCCGGGGTCTTATCTCAACGACACT
GTCGACGAAGGGCCCGATGTGGCTCAAGTTTCCGTCGTATGGCAGCCTTA
CGAGGACAAGGTATCTGCCCCGGCAGGGTCTAACTTGCTTAGGAGCGCAC
TCGGCTGCGGAGCGATGGTGTTAGACAACACCTTCTGTTTGACGGGCCAG
TGCGAGGCATGCATGGCTGAGGTGGACGGAAATGTGGTACTGTCCTGCAT
GGTGCCTGTGCCCAATGATGGAAGGTATCTGCCCCGGCAGGGTCTAACTT
GCTTAGGAGCGCACTCGGCTGCGGAGCGATGGTGTTAGACAACACCTTCT
GTTTGACGGGCCAGTGCGAGGCATGCATGGCTGAGGTGGACGGAAATGTG
GTACTGTCCTGCATGGTGCCTGTGCCCAATGATGGAAGGACCGATGTGGA
GGCCCTGGTGTGCGATTCCGACGCCGCTTGGGACGACATGATGGTGTAAG
ACCGATGTGGAGGCCCTGGTGTGCGATTCCGACGCCGCTTGGGACGACAT
GATGGTGTAA

mRNA_C-linearis_contig101.723.1 (mRNA) Chordaria linearis ClinC8C monoicous

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