Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 1536 |
| Cds size | 804 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927359.1391933-UTR-C-linearis_contig101:109514..109559 | 1622927359.1391933-UTR-C-linearis_contig101:109514..109559 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig101 109515..109559 + |
| 1690879651.2650938-UTR-C-linearis_contig101:109514..109559 | 1690879651.2650938-UTR-C-linearis_contig101:109514..109559 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig101 109515..109559 + |
| 1622927359.1635225-UTR-C-linearis_contig101:110363..111050 | 1622927359.1635225-UTR-C-linearis_contig101:110363..111050 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig101 110364..111050 + |
| 1690879651.2822866-UTR-C-linearis_contig101:110363..111050 | 1690879651.2822866-UTR-C-linearis_contig101:110363..111050 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig101 110364..111050 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927359.1517348-CDS-C-linearis_contig101:109559..110363 | 1622927359.1517348-CDS-C-linearis_contig101:109559..110363 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig101 109560..110363 + |
| 1690879651.2741418-CDS-C-linearis_contig101:109559..110363 | 1690879651.2741418-CDS-C-linearis_contig101:109559..110363 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig101 109560..110363 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig101.719.1 >prot_C-linearis_contig101.719.1 ID=prot_C-linearis_contig101.719.1|Name=mRNA_C-linearis_contig101.719.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=268bp
MDPREGQLLGGAGAGAEGGAEAECREDMPARRRRPGGESDEGLELRVGEE
RVAAARLLESLGGGAYWEGGPRTHSSLENGTEGLESGERLPENSERRGDG
GAPEPVAAAAAERGARKGAVDPPPPTPSPDPGFSDRGRLRDELVVGSVAC
KTAAAAGSGRDEEAKTAAGQGEGEDEDEGESEGGDNTIGTPAASAEMDGG
VVGGAGGAGGTSSGGGSGCDRPGSGSVPSPAASADDTDGAPGEAGVAAPP
EKAGASTSPPQPPPPAY* back to topmRNA from alignment at C-linearis_contig101:109515..111050+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig101.719.1 ID=mRNA_C-linearis_contig101.719.1|Name=mRNA_C-linearis_contig101.719.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1536bp|location=Sequence derived from alignment at C-linearis_contig101:109515..111050+ (Chordaria linearis ClinC8C monoicous)
AGAAGCTCGGCCTCGGGGGACGAGGGGCGATTGACCTTCGATTCGATGGA
CCCAAGAGAGGGGCAACTCCTCGGAGGGGCAGGGGCAGGGGCAGAGGGCG
GGGCTGAAGCCGAGTGTCGAGAGGATATGCCGGCACGCCGCCGCCGACCC
GGGGGAGAGAGCGACGAGGGGCTTGAGCTTCGAGTCGGAGAAGAAAGGGT
CGCCGCCGCACGGCTTCTAGAAAGCCTCGGCGGGGGGGCTTACTGGGAAG
GCGGGCCCCGTACCCATAGCAGCCTTGAAAACGGGACCGAGGGTCTCGAA
AGCGGGGAGAGACTACCGGAAAACTCCGAGAGACGCGGTGACGGAGGCGC
TCCCGAGCCCGTGGCGGCGGCGGCCGCGGAGCGAGGGGCGAGGAAGGGCG
CCGTAGACCCGCCGCCACCGACACCATCGCCAGATCCCGGCTTCTCGGAC
CGAGGGCGGCTGCGGGACGAGTTGGTGGTGGGTAGCGTGGCGTGCAAGAC
TGCTGCCGCGGCAGGGAGCGGCCGCGACGAGGAGGCTAAGACTGCTGCAG
GCCAAGGCGAAGGCGAAGACGAAGACGAAGGCGAAAGCGAAGGGGGCGAC
AACACGATTGGAACACCCGCAGCCTCAGCTGAAATGGACGGCGGCGTTGT
CGGCGGCGCTGGCGGTGCCGGTGGCACGAGTAGTGGGGGCGGTAGCGGCT
GTGATCGGCCAGGGTCGGGCTCTGTTCCCAGTCCCGCTGCGAGCGCTGAT
GACACAGACGGAGCGCCCGGTGAGGCGGGTGTGGCTGCTCCCCCAGAAAA
GGCCGGGGCAAGTACTTCGCCGCCGCAGCCACCACCCCCGGCGTATTAAG
GTGTATCATACGTATGCCGGCGGTCTGTCTGGTCGACGTCACCGGCGTTT
TATTGTTTGTATTTTTGTATGTATGTACATGTTTTTGCGCACGGGTTGGT
TCGTTCAGCGGACCGGCTTGACGGGGCCGTCGAAGAATAAAAGAACGTGC
TTCTTTAGTTGTAGTTTTCCTCTTTACTGTCGCACCGCCTGCTGCTGTGA
CTGCGTTTTTTATTTTTATAAATTATGTGTTTGAGCTGCCGCCGACTTTC
TGACACCGAACGTTGACACGAGTCCGCGGCCGTTGTGCTCGTAGCGTTAC
CTTTGTCATGTCCTGCTTGACACTCACGATTGCTGTGGCCTCATGATGCG
TTCCAAACCGCCGCGCCGGGTCGCGATCAAGTGACCAGGAAAAATCGGCA
ACGCTGGGCTCGATTGGTATTCGCTTGAGTCTCTGAAAAACTGTCGAGCT
TGTTTGTGGAAGCAAGGTCGGAGGGAGCCTTGGGAAGAGGAGGTTTCTGT
GTGATCCCGGGCTCTCTCAGGTACTGGGTAGAGTAAAAAGTAAGAAGAAC
GAATGCTACACACGAGGGGATGGGATGTGGCACAGTTAGTTCACACAGAT
CCCACAGCGACCTCTCTCTTGAATAGTCTAGTCCATCACCCACGCAAAAC
ATGACGCGAGAGATCGTCTGCAGTAAAGAAAAAGAG back to topCoding sequence (CDS) from alignment at C-linearis_contig101:109515..111050+ >mRNA_C-linearis_contig101.719.1 ID=mRNA_C-linearis_contig101.719.1|Name=mRNA_C-linearis_contig101.719.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1608bp|location=Sequence derived from alignment at C-linearis_contig101:109515..111050+ (Chordaria linearis ClinC8C monoicous)
ATGGACCCAAGAGAGGGGCAACTCCTCGGAGGGGCAGGGGCAGGGGCAGA
GGGCGGGGCTGAAGCCGAGTGTCGAGAGGATATGCCGGCACGCCGCCGCC
GACCCGGGGGAGAGAGCGACGAGGGGCTTGAGCTTCGAGTCGGAGAAGAA
AGGGTCGCCGCCGCACGGCTTCTAGAAAGCCTCGGCGGGGGGGCTTACTG
GGAAGGCGGGCCCCGTACCCATAGCAGCCTTGAAAACGGGACCGAGGGTC
TCGAAAGCGGGGAGAGACTACCGGAAAACTCCGAGAGACGCGGTGACGGA
GGCGCTCCCGAGCCCGTGGCGGCGGCGGCCGCGGAGCGAGGGGCGAGGAA
GGGCGCCGTAGACCCGCCGCCACCGACACCATCGCCAGATCCCGGCTTCT
CGGACCGAGGGCGGCTGCGGGACGAGTTGGTGGTGGGTAGCGTGGCGTGC
AAGACTGCTGCCGCGGCAGGGAGCGGCCGCGACGAGGAGGCTAAGACTGC
TGCAGGCCAAGGCGAAGGCGAAGACGAAGACGAAGGCGAAAGCGAAGGGG
GCGACAACACGATTGGAACACCCGCAGCCTCAGCTGAAATGGACGGCGGC
GTTGTCGGCGGCGCTGGCGGTGCCGGTGGCACGAGTAGTGGGGGCGGTAG
CGGCTGTGATCGGCCAGGGTCGGGCTCTGTTCCCAGTCCCGCTGCGAGCG
CTGATGACACAGACGGAGCGCCCGGTGAGGCGGGTGTGGCTGCTCCCCCA
GAAAAGGCCGGGGCAAGTACTTCGCCGCCGCAGCCACCACCCCCGGCGTA
TTAAATGGACCCAAGAGAGGGGCAACTCCTCGGAGGGGCAGGGGCAGGGG
CAGAGGGCGGGGCTGAAGCCGAGTGTCGAGAGGATATGCCGGCACGCCGC
CGCCGACCCGGGGGAGAGAGCGACGAGGGGCTTGAGCTTCGAGTCGGAGA
AGAAAGGGTCGCCGCCGCACGGCTTCTAGAAAGCCTCGGCGGGGGGGCTT
ACTGGGAAGGCGGGCCCCGTACCCATAGCAGCCTTGAAAACGGGACCGAG
GGTCTCGAAAGCGGGGAGAGACTACCGGAAAACTCCGAGAGACGCGGTGA
CGGAGGCGCTCCCGAGCCCGTGGCGGCGGCGGCCGCGGAGCGAGGGGCGA
GGAAGGGCGCCGTAGACCCGCCGCCACCGACACCATCGCCAGATCCCGGC
TTCTCGGACCGAGGGCGGCTGCGGGACGAGTTGGTGGTGGGTAGCGTGGC
GTGCAAGACTGCTGCCGCGGCAGGGAGCGGCCGCGACGAGGAGGCTAAGA
CTGCTGCAGGCCAAGGCGAAGGCGAAGACGAAGACGAAGGCGAAAGCGAA
GGGGGCGACAACACGATTGGAACACCCGCAGCCTCAGCTGAAATGGACGG
CGGCGTTGTCGGCGGCGCTGGCGGTGCCGGTGGCACGAGTAGTGGGGGCG
GTAGCGGCTGTGATCGGCCAGGGTCGGGCTCTGTTCCCAGTCCCGCTGCG
AGCGCTGATGACACAGACGGAGCGCCCGGTGAGGCGGGTGTGGCTGCTCC
CCCAGAAAAGGCCGGGGCAAGTACTTCGCCGCCGCAGCCACCACCCCCGG
CGTATTAA back to top
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