Homology
BLAST of mRNA_C-linearis_contig101.705.1 vs. uniprot
Match: D8LE05_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE05_ECTSI) HSP 1 Score: 94.7 bits (234), Expect = 2.570e-23 Identity = 58/82 (70.73%), Postives = 65/82 (79.27%), Query Frame = 1 Query: 1 FNFVEYPPESKKLPSGTDIVKMMEERNAKRRAAAARAGVDAHLAAAGGA---PTSRTSDTTLDATAKVAPPATDSLREGDQT 237
F FVEYPPESKKLPSG +IV+MMEER AKRR AA R+G+DAHLAAAG PTSR +DTTLDATA V PP D+ RE DQ+
Sbjct: 33 FKFVEYPPESKKLPSGKEIVEMMEEREAKRRTAATRSGMDAHLAAAGAVTRTPTSRRTDTTLDATATV-PPTPDASREVDQS 113
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.705.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| D8LE05_ECTSI | 2.570e-23 | 70.73 | Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 237 |
| Cds size | 237 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927359.249756-CDS-C-linearis_contig101:11498..11591 | 1622927359.249756-CDS-C-linearis_contig101:11498..11591 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig101 11499..11591 - |
| 1690879651.2992804-CDS-C-linearis_contig101:11498..11591 | 1690879651.2992804-CDS-C-linearis_contig101:11498..11591 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig101 11499..11591 - |
| 1622927359.2606528-CDS-C-linearis_contig101:11850..11994 | 1622927359.2606528-CDS-C-linearis_contig101:11850..11994 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig101 11851..11994 - |
| 1690879651.307846-CDS-C-linearis_contig101:11850..11994 | 1690879651.307846-CDS-C-linearis_contig101:11850..11994 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig101 11851..11994 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig101.705.1 >prot_C-linearis_contig101.705.1 ID=prot_C-linearis_contig101.705.1|Name=mRNA_C-linearis_contig101.705.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=79bp
FNFVEYPPESKKLPSGTDIVKMMEERNAKRRAAAARAGVDAHLAAAGGAP
TSRTSDTTLDATAKVAPPATDSLREGDQT back to topmRNA from alignment at C-linearis_contig101:11499..11994- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig101.705.1 ID=mRNA_C-linearis_contig101.705.1|Name=mRNA_C-linearis_contig101.705.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=496bp|location=Sequence derived from alignment at C-linearis_contig101:11499..11994- (Chordaria linearis ClinC8C monoicous)
TTCAATTTTGTCGAGTACCCGCCAGAGTCGAAGAAGCTGCCGTCGGGAAC
GGATATCGTGAAGATGATGGAGGAGAGAAATGCCAAGAGGCGAGCCGCGG
CGGCGAGAGCCGGGGTTGACGCGCATCTCGCGGCCGCGGGGGGCGTTGAA
GAGGGTAAGAAGAGGGAGAAGCGGACGAGCGGACGTGTAAACGCGGGGAA
AATCCTGGCGGCTGCATGCCTCACGCAGCAACTCATCGGCTATGTAGATA
TGTTTCCATCACACGCGCTACTTTATTTTCAAGTGCAACCAACTTGGTGT
AACCAACGCCTCCTTTATTCTGTTTGTCTTTGTTCTGGTTGCTTTCGGTT
TCGGCCCACCCCGCCGCCTCCCTTCTAACGGCGCCCCATCCCACGTTTGC
CAGGCGCCAACATCGCGAACATCCGACACCACGCTGGACGCCACTGCGAA
AGTAGCTCCTCCGGCAACAGACTCGTTGCGCGAAGGGGATCAAACC back to topCoding sequence (CDS) from alignment at C-linearis_contig101:11499..11994- >mRNA_C-linearis_contig101.705.1 ID=mRNA_C-linearis_contig101.705.1|Name=mRNA_C-linearis_contig101.705.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at C-linearis_contig101:11499..11994- (Chordaria linearis ClinC8C monoicous)
TTCAATTTTGTCGAGTACCCGCCAGAGTCGAAGAAGCTGCCGTCGGGAAC
GGATATCGTGAAGATGATGGAGGAGAGAAATGCCAAGAGGCGAGCCGCGG
CGGCGAGAGCCGGGGTTGACGCGCATCTCGCGGCCGCGGGGGGCTTCAAT
TTTGTCGAGTACCCGCCAGAGTCGAAGAAGCTGCCGTCGGGAACGGATAT
CGTGAAGATGATGGAGGAGAGAAATGCCAAGAGGCGAGCCGCGGCGGCGA
GAGCCGGGGTTGACGCGCATCTCGCGGCCGCGGGGGGCGCGCCAACATCG
CGAACATCCGACACCACGCTGGACGCCACTGCGAAAGTAGCTCCTCCGGC
AACAGACTCGTTGCGCGAAGGGGATCAAACCGCGCCAACATCGCGAACAT
CCGACACCACGCTGGACGCCACTGCGAAAGTAGCTCCTCCGGCAACAGAC
TCGTTGCGCGAAGGGGATCAAACC back to top
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