mRNA_C-linearis_contig100.700.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_C-linearis_contig100.700.1 vs. uniprot
Match: D7FRV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV9_ECTSI) HSP 1 Score: 238 bits (608), Expect = 5.530e-65 Identity = 117/259 (45.17%), Postives = 159/259 (61.39%), Query Frame = 3 Query: 1779 FQQEGCPYSISEQEAADIFNSTSEPGNVISVEKFGVGRTGNRFESLSLVLSMGYCCRSRLVYLPQEDDVLP-TESGDVFQAGQRLFSFIHATLPSDGYTQLRDDPDACSPTLELSPDDAFYLSGYPQTLLDCMNEVYVRGCERAFLGPGLDKDNICPKQDPATQTGVGNLVVHIRSGDIMTYRGGADHYGDNPADN---RGPFGQPPLQYYLNAISEKKWDTITVLTWAWEDALLNPTYTVIEMMAKTRILGENIRLFK 2543
FQ GCP ++S +A + + N I++ FG GR+GN F +S L+MG+CCRSRL+ LP+ D +P + G F+AG+R F F T P G+ QL D+P+ C P +E D+AF LL CMN VY+RGCE+A+LG +D + CPKQ+P + G G+LVVHIRSGDI NP + R FGQPPLQYYL+ + EK WD +T LT AW +NPT++++E+MAK LG+N+RL K
Sbjct: 84 FQSAGCPQALSRSQAEAALDGGNSTSNTITLLSFGSGRSGNHFLMISSYLAMGFCCRSRLLTLPEVDTAMPGDDEGGGFKAGERWFDFSRVTPPWPGFEQLGDNPEVCRPQMEDGADNAFGYEHIHSRLLRCMNRVYLRGCEKAYLGKMVDLEGFCPKQEPGKRKGAGSLVVHIRSGDIF-----------NPNEEGRRRTEFGQPPLQYYLHVLGEKDWDNVTFLTAAWNQKAINPTFSILEVMAKAGTLGDNVRLLK 331
BLAST of mRNA_C-linearis_contig100.700.1 vs. uniprot
Match: D7FRV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV8_ECTSI) HSP 1 Score: 193 bits (491), Expect = 7.770e-51 Identity = 96/203 (47.29%), Postives = 122/203 (60.10%), Query Frame = 3 Query: 1932 MGYCCRSRLVYLPQEDDVLPTESGDVFQAGQRLFSFIHATLPSDGYTQLRDDPDACSPTLELSPDDAFYLSGYPQTLLDCMNEVYVRGCERAFLGPGLDKDNICPKQDPATQTGVGNLVVHIRSGDIMTYRGGADHYGDNPADNRGPFGQPPLQYYLNAISEKKWDTITVLTWAWEDALLNPTYTVIEMMAKTRILGENIRLF 2540
MG+CCRSRL+ LP DD LP E D F + +R F F + T+P Y ++ DD + C P + AF LL+CMN VY+RGCE+A+LG +D + CPKQ+P + G G+LV HIRSGDI D R FGQPPLQYYL ++ K WD +T LT AWED LNPT+ +EMMA +LGEN+ LF
Sbjct: 1 MGFCCRSRLLTLPATDDKLPDEL-DNFTSARRWFDFSNVTVPWPEYQEMGDDQEVCRPETKDGGRKAFGYEDVHPKLLECMNRVYLRGCEKAYLGKLVDVGSFCPKQEPGKRKGAGSLVAHIRSGDIFN--------PDGEGHRRQGFGQPPLQYYLRVLAAKDWDNVTFLTAAWEDRALNPTFLTLEMMADAGVLGENVHLF 194
BLAST of mRNA_C-linearis_contig100.700.1 vs. uniprot
Match: A0A6H5L0Z0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z0_9PHAE) HSP 1 Score: 144 bits (363), Expect = 4.790e-33 Identity = 109/368 (29.62%), Postives = 168/368 (45.65%), Query Frame = 3 Query: 1773 LFFQQEGCPYSISEQEAADIFNSTSEPGNVISVEKF-GVGRTGNRFESLSLVLSMGYCCRSRLVYLPQEDDVLPTESGDVFQAGQRLFSF--IHATLPSD--GYTQLRDDPDACSPTLELSPDDA--FYLSGYPQTLLDCMNEVYVRGCERAFLGPGLDKDN-ICPKQDPATQT------------------------GVG-NLVVHIRSGDIMTYRGGADHYGDNPADNRGPFGQPPLQYYLNAISEKKWDTITVLTWAWEDALLNPTYTVIEMMAKTRILGENIRLFKVMD*PIFWRGGTRELANCYNIIDGNGTGTI*MLDWYLQPQSFSRVAGETCCPFVP*PVHVGR*GIELY--ECLTALQQ 2771
L FQ + CP +IS++EAA + S PG ++SV +GR+GN +E ++ V SM +CC+ ++V +P++D VLPTE+GD + +SF A L ++ GY + DP+ C P LS F G + LL CM V + GC FL + D+ C +D + G G +LVVH+RSGDI + D P +GQPPLQ+YL I + W I+VLT A NPT+ V++ + K +LG + D R++ N++ + T ++ + F + PF + + R +E+Y E T L +
Sbjct: 36 LVFQSDACPQAISKEEAAALEADESLPGGILSVGSLDAIGRSGNHYEVVTRVFSMSFCCQYKVVRMPEQDTVLPTENGDTLELRHNTYSFSSADAALRTEHLGYGDIATDPEICPPIKHLSGQKTKEFTREGVHERLLQCMLRVEMIGCVAHFLHDVVGADDAFCRWKDEGKEERRSLLRATSAVEGEDKRHAGSSPQGKGQSLVVHMRSGDIFS-----PELSDIPW-----YGQPPLQFYLKVIGSRPWSNISVLTNARIQREFNPTFGVLQELDKQGLLGAPANFYADRD----LYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARGGPFFVDRICLYRPDVEVYGIEWKTTLNE 389
BLAST of mRNA_C-linearis_contig100.700.1 vs. uniprot
Match: A0A6H5K7B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B3_9PHAE) HSP 1 Score: 120 bits (302), Expect = 1.700e-24 Identity = 95/315 (30.16%), Postives = 133/315 (42.22%), Query Frame = 3 Query: 1794 CPYSI-SEQEAADIFNSTSEPGNVISVEKFGVGRTGNRFESLSLVLSMGYCCRSRLVYLPQEDDVLPTESGDVFQAGQRLFSFIHATLPSDGYTQLRDDPDACSPTLELSPDDAFYLSG--------YPQTLLDCMNEV-YVRGCERAFLGPGLDKDNICPKQDPATQT-----------------------------------------------------GVGNLVVHIRSGDIMTYRGGADHYGDNPADNRGPFGQPPLQYYLNAISEKKWDTITVLTWAWEDAL--LNPTYTVIEMMAKTRILGENIRLFK 2543
CPY+I SE+EA + +TS PGNV+ V F R GNRF S+S LS+GYCC+SRL+ LP +D+ L + G R F F A +G+ D +C P + +AF+L G Y L +C+ E+ + GCE A+ P ++CP + A + GNLVVH+RSGDI P + +GQPPLQYY+ AI +++WD + V+T D +NP +E L NI K
Sbjct: 147 CPYAIPSEEEARERSGNTSAPGNVVVVTDFNYCRLGNRFTSMSRSLSLGYCCKSRLLSLPPKDEQLAPGRFNEGIPGPRNFDFSSAP-DVEGF-----DYSSCPPEITWGGTNAFHLQGLRDEGHPYYTPELFECIKELPRIAGCEAAYFFPKDMAVDMCPLDETAERDHNNSNVRDVSEKPRDDAPGVRLDWGERGQGREATXXXXXXXXXXXXXXXXXEGSAGNLVVHVRSGDIFV----------RPHPD---YGQPPLQYYVRAIQDQEWDRVDVVTDGIVDETHAINPVVPALEAKVAEGELAGNIHFHK 442
BLAST of mRNA_C-linearis_contig100.700.1 vs. uniprot
Match: D7G610_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G610_ECTSI) HSP 1 Score: 105 bits (262), Expect = 4.090e-20 Identity = 86/273 (31.50%), Postives = 124/273 (45.42%), Query Frame = 3 Query: 1773 LFFQQEGCPYSISEQEAA--DIFNSTSEPGNVISVEKFGVGRTGNRFESLSLVLSMGYCCRSRLVYLPQEDDVLPTESGDVFQAGQRLFSFIHATLPSDGYTQLRDDPDACSPTLELSPDDAFYLSG--------YPQTLLDCMNEV-YVRGCERAFLGPGLDKDNICPKQ--------DPATQTGVGNLVVHIRSGDIMTYRGGADHYGDNPADNRGPF-GQPPLQYYLNAISEKKWDTITVLTWAWEDALLNPTYTVIEMMAKTRILGENI 2531
+ F + C Y+I + A +ST E GNV+ V GRTGNRF ++ L++GYCC+++ V+LP +DDVL + G R F F A DG D C + A ++G Y + DCM + + GCE A+ P +CP++ D G GNLV+H+RSGDI D P+ GQPPLQ+YL + ++ WD I V+T +NP + M T L +N+
Sbjct: 52 IAFNKHDCTYAIPNAKVARKQRHDSTIE-GNVVKVTHLQFGRTGNRFMAVYRNLALGYCCKAKQVWLPPKDDVLAPGIFNEGTPGPRWFDFSSAP-DVDGV-----DLGRCPIDIIWENRGAMQMAGLDNPERNKYLPHIRDCMAKAPRLLGCEAAYYFP--QDIAVCPRKKKPFLALGDRNPPGGAGNLVLHVRSGDIFF-------------DRVVPYKGQPPLQFYLLLMQDQPWDRIDVVTNGQNWDNVNPVVPALMAMRATGALPDNV 302
BLAST of mRNA_C-linearis_contig100.700.1 vs. uniprot
Match: D7G1L4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L4_ECTSI) HSP 1 Score: 100 bits (249), Expect = 6.030e-18 Identity = 92/314 (29.30%), Postives = 131/314 (41.72%), Query Frame = 3 Query: 1794 CPYSI-SEQEAADIFN------STSEPGNVISVEKFGVGRTGNRFESLSLVLSMGYCCRSRLVYLPQEDDVLPTESGDVFQAGQRLFSFIHATLPSDGYTQLRDDPDACSPTLELSPDDAFYLSG--------YPQTLLDCMNEV-YVRGCERAFLGPGLDKDNICPKQDPAT-------------------------QTG---------------------VGNLVVHIRSGDIMTYRGGADHYGDNPADNRGPFGQPPLQYYLNAISEKKWDTITVLTWAWEDA--LLNPTYTVIEMMAKTRILGENIRLFK 2543
CPY+I +E+E + + +TS PGNV+ V F R GNRF S+ LS+GYCC+SRLV LP +DD L + G R F F A +G+ D +C P ++ AF+L G Y L C+ E+ ++ GCE A+ P +CP + A ++G GNLV+H+RSGDI +PA +GQ YY+ AI +++WD + V+T ED +NP +E L NI K
Sbjct: 146 CPYAILAEEEGHERSDRGGDGGNTSAPGNVVVVTDFNYCRLGNRFLSMGRSLSLGYCCKSRLVSLPPKDDQLAPGRFNDGTPGPRNFDFSSAP-DVEGF-----DSSSCPPEIKWGGTQAFHLEGLRDEGHPYYTPGLFTCIKELPWIIGCEAAYFFPTDMAVPMCPLDETAEGGNKNVRDISEKPKDDAPGIQLDWEESGHGREATEQXXXXXXXXXXXGSAGNLVMHVRSGDIFV----------SPA--HPGYGQ----YYVQAIQDQQWDRVDVVTNGIEDKNHAINPIVPALEAKVAKGQLPGNIHFHK 437
BLAST of mRNA_C-linearis_contig100.700.1 vs. uniprot
Match: A0A6H5K2F3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2F3_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 6.050e-10 Identity = 46/118 (38.98%), Postives = 62/118 (52.54%), Query Frame = 3 Query: 1791 GCPYSI-SEQEAADIFNSTSEPGNVISVEKFGVGRTGNRFESLSLVLSMGYCCRSRLVYLPQEDDVLPTESGDVFQAGQRLFSFIHATLPSDGYTQLRDDPDACSPTLELSPDDAFYL 2141
GCPY I + +EA S PGNV+ VE RTGN F S L++GYCC+S++V+LP +DDVL + G R F F A DG+ D ACS + + AF++
Sbjct: 93 GCPYVIDTAEEAISRIKDKSLPGNVVKVEHLTFCRTGNHFSSFFRNLALGYCCKSKVVWLPPKDDVLAPGVFNQGTPGPRWFDFSSAP-DVDGF-----DSSACSADITWAGQRAFHM 204
BLAST of mRNA_C-linearis_contig100.700.1 vs. uniprot
Match: D8LSV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSV8_ECTSI) HSP 1 Score: 64.7 bits (156), Expect = 3.680e-8 Identity = 37/108 (34.26%), Postives = 55/108 (50.93%), Query Frame = 3 Query: 1932 MGYCCRSRLVYLPQEDDVLPTESGDVFQAGQRLFSF--IHATLPSD--GYTQLRDDPDACSPTLELSPDDA--FYLSGYPQTLLDCMNEVYVRGCERAFLGPGLDKDN 2237
M +CC+ ++V +P++D VLPTE+GD + +SF A L ++ GY + DP+ C P LS F G + LL CM V + GC FL + D+
Sbjct: 1 MSFCCQYKVVTMPEQDTVLPTENGDTLELRHNTYSFSSADAALRTEHLGYGDISTDPEICPPIKHLSGQKTKEFTREGVHERLLQCMLRVEMIGCVAHFLHDVVGADD 108 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig100.700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig100.700.1 >prot_C-linearis_contig100.700.1 ID=prot_C-linearis_contig100.700.1|Name=mRNA_C-linearis_contig100.700.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=394bp MQYHRKYLLRSSINVSHPVRPSDANRAASTKYTDWRSALVPSPTVSPFFDback to top mRNA from alignment at C-linearis_contig100:366018..373528+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig100.700.1 ID=mRNA_C-linearis_contig100.700.1|Name=mRNA_C-linearis_contig100.700.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7511bp|location=Sequence derived from alignment at C-linearis_contig100:366018..373528+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig100:366018..373528+ >mRNA_C-linearis_contig100.700.1 ID=mRNA_C-linearis_contig100.700.1|Name=mRNA_C-linearis_contig100.700.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2364bp|location=Sequence derived from alignment at C-linearis_contig100:366018..373528+ (Chordaria linearis ClinC8C monoicous)back to top |