Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 519 |
| Cds size | 342 |
| Stop | 1 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927353.212176-CDS-C-linearis_contig100:326412..326754 | 1622927353.212176-CDS-C-linearis_contig100:326412..326754 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig100 326413..326754 + |
| 1690879647.1183712-CDS-C-linearis_contig100:326412..326754 | 1690879647.1183712-CDS-C-linearis_contig100:326412..326754 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig100 326413..326754 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927353.2246776-UTR-C-linearis_contig100:326754..326929 | 1622927353.2246776-UTR-C-linearis_contig100:326754..326929 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig100 326755..326929 + |
| 1690879647.1287513-UTR-C-linearis_contig100:326754..326929 | 1690879647.1287513-UTR-C-linearis_contig100:326754..326929 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig100 326755..326929 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig100.694.1 >prot_C-linearis_contig100.694.1 ID=prot_C-linearis_contig100.694.1|Name=mRNA_C-linearis_contig100.694.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=114bp
RLVITQKRIQIDALQSRFWSDISVNLQNFDKNKKRPGNCETRSNKSVPGR
VFLYRQRAHPWKKNSRYSGFVSIKSRGKKKKTVGHSMRLETGRLPVLSDV
GTTTCLSVCREKL* back to topmRNA from alignment at C-linearis_contig100:326413..326929+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig100.694.1 ID=mRNA_C-linearis_contig100.694.1|Name=mRNA_C-linearis_contig100.694.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=517bp|location=Sequence derived from alignment at C-linearis_contig100:326413..326929+ (Chordaria linearis ClinC8C monoicous)
CGGTTAGTTATCACCCAAAAAAGAATTCAAATTGATGCTCTACAGAGTCG
GTTTTGGAGCGATATCTCCGTCAATTTACAAAATTTCGATAAAAACAAAA
AACGACCTGGCAATTGCGAGACGCGTTCAAATAAATCCGTACCTGGTAGA
GTTTTTTTATATCGGCAAAGAGCACACCCCTGGAAAAAGAATTCAAGATA
TTCCGGTTTTGTGTCGATAAAAAGTAGAGGAAAAAAAAAAAAAACTGTCG
GTCACTCCATGCGCCTGGAAACAGGGCGTTTGCCGGTACTTTCAGATGTC
GGAACAACCACCTGTCTGTCTGTGTGCAGAGAAAAGTTGTAATTTGTGCT
GGGATTTTTTTGTATTTTCTGTTGTGCATGGACTATAGTGCCCAACAAGA
TAAATCACACCGAAATGACGATTTTGCCGAAGCAAGCTTCGCGTGAACGA
CCCGGAGGGCGCCCCAAAAAGCAGCCCCAAAAGAACTCCGCTGGCGAACT
CACAGTTTTTGTGATCG back to topCoding sequence (CDS) from alignment at C-linearis_contig100:326413..326929+ >mRNA_C-linearis_contig100.694.1 ID=mRNA_C-linearis_contig100.694.1|Name=mRNA_C-linearis_contig100.694.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at C-linearis_contig100:326413..326929+ (Chordaria linearis ClinC8C monoicous)
CGGTTAGTTATCACCCAAAAAAGAATTCAAATTGATGCTCTACAGAGTCG
GTTTTGGAGCGATATCTCCGTCAATTTACAAAATTTCGATAAAAACAAAA
AACGACCTGGCAATTGCGAGACGCGTTCAAATAAATCCGTACCTGGTAGA
GTTTTTTTATATCGGCAAAGAGCACACCCCTGGAAAAAGAATTCAAGATA
TTCCGGTTTTGTGTCGATAAAAAGTAGAGGAAAAAAAAAAAAAACTGTCG
GTCACTCCATGCGCCTGGAAACAGGGCGTTTGCCGGTACTTTCAGATGTC
GGAACAACCACCTGTCTGTCTGTGTGCAGAGAAAAGTTGTAACGGTTAGT
TATCACCCAAAAAAGAATTCAAATTGATGCTCTACAGAGTCGGTTTTGGA
GCGATATCTCCGTCAATTTACAAAATTTCGATAAAAACAAAAAACGACCT
GGCAATTGCGAGACGCGTTCAAATAAATCCGTACCTGGTAGAGTTTTTTT
ATATCGGCAAAGAGCACACCCCTGGAAAAAGAATTCAAGATATTCCGGTT
TTGTGTCGATAAAAAGTAGAGGAAAAAAAAAAAAAACTGTCGGTCACTCC
ATGCGCCTGGAAACAGGGCGTTTGCCGGTACTTTCAGATGTCGGAACAAC
CACCTGTCTGTCTGTGTGCAGAGAAAAGTTGTAA back to top
|