Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 823 |
| Cds size | 660 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927352.8546543-UTR-C-linearis_contig100:291361..291516 | 1622927352.8546543-UTR-C-linearis_contig100:291361..291516 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig100 291362..291516 + |
| 1690879646.9310544-UTR-C-linearis_contig100:291361..291516 | 1690879646.9310544-UTR-C-linearis_contig100:291361..291516 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig100 291362..291516 + |
| 1622927352.9154718-UTR-C-linearis_contig100:292258..292266 | 1622927352.9154718-UTR-C-linearis_contig100:292258..292266 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig100 292259..292266 + |
| 1690879646.9630697-UTR-C-linearis_contig100:292258..292266 | 1690879646.9630697-UTR-C-linearis_contig100:292258..292266 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig100 292259..292266 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927352.8644614-CDS-C-linearis_contig100:291516..292064 | 1622927352.8644614-CDS-C-linearis_contig100:291516..292064 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig100 291517..292064 + |
| 1690879646.9445577-CDS-C-linearis_contig100:291516..292064 | 1690879646.9445577-CDS-C-linearis_contig100:291516..292064 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig100 291517..292064 + |
| 1622927352.8748827-CDS-C-linearis_contig100:292146..292258 | 1622927352.8748827-CDS-C-linearis_contig100:292146..292258 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig100 292147..292258 + |
| 1690879646.953994-CDS-C-linearis_contig100:292146..292258 | 1690879646.953994-CDS-C-linearis_contig100:292146..292258 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig100 292147..292258 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig100.693.1 >prot_C-linearis_contig100.693.1 ID=prot_C-linearis_contig100.693.1|Name=mRNA_C-linearis_contig100.693.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=220bp
MSTFESDEIEGWDDLTPALQQLLKTQHDAIANQQGELELLRFQKQEQQQR
DTSEAAAQQRTDTPVRHGADTGASSSAPAAREEPRPTPGGQDEEEAQDVE
DQEATETQSRENPDETPEAITPLPPIISSLQPREKASLPSRETALAPALE
IYMEGGCDVRADNELDRMERGCAGCAVTPAAVQIRLSSNRRAGHNNINSS
VPHGRNWRLSRRRAGGLSM* back to topmRNA from alignment at C-linearis_contig100:291362..292266+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig100.693.1 ID=mRNA_C-linearis_contig100.693.1|Name=mRNA_C-linearis_contig100.693.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=905bp|location=Sequence derived from alignment at C-linearis_contig100:291362..292266+ (Chordaria linearis ClinC8C monoicous)
AATACCTGTACCGATCCCGGTCGACTGCCTTTACTCTGAGCGCCCCGACA
ATTGGGCCCCCACAGCACCATCTACGATTTATCTCTTACACTAGTAGTGT
TTATCCTAAATATCGTGGGTGAATGTGCTGATAGAGACCACGACCCGTGG
GTGGCATGTCGACTTTCGAGAGCGACGAAATCGAGGGTTGGGATGACCTC
ACTCCAGCGTTGCAGCAGCTGTTGAAGACACAGCACGATGCCATCGCCAA
CCAGCAAGGGGAACTGGAGCTTCTACGGTTCCAGAAACAAGAACAACAAC
AACGAGACACTTCGGAGGCAGCCGCGCAGCAGCGGACTGACACTCCAGTT
CGGCATGGGGCGGACACGGGAGCATCCTCATCGGCACCAGCTGCACGAGA
GGAGCCGCGGCCGACACCCGGAGGACAAGACGAAGAAGAAGCACAAGATG
TTGAAGACCAGGAAGCAACCGAGACTCAGAGCCGGGAGAACCCTGATGAG
ACACCAGAGGCAATAACTCCACTCCCCCCAATAATATCATCCCTCCAACC
ACGGGAGAAGGCATCCCTCCCGTCACGGGAGACGGCACTGGCGCCAGCGT
TAGAAATATATATGGAAGGTGGGTGTGACGTGCGGGCTGACAACGAGTTA
GACCGCATGGAGAGAGGATGTGCTGGGTGTGCGGTCACACCTGCTGCAGT
GCAGCGACTGCCAAGCGCTGGGGTAGAGTCGCCCTTAGCGGCGATACCGG
AGCTGGATCCACCATCGGAGGAGCAACAGCAACAGGATCCGGTTGTCTTC
AAACCGGAGAGCAGGTCACAACAACATCAACAGCAGTGTACCGCATGGGA
GGAACTGGCGGCTCAGCCGGAGGAGAGCTGGTGGGTTAAGCATGTGAAGG
ACGCC back to topCoding sequence (CDS) from alignment at C-linearis_contig100:291362..292266+ >mRNA_C-linearis_contig100.693.1 ID=mRNA_C-linearis_contig100.693.1|Name=mRNA_C-linearis_contig100.693.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1320bp|location=Sequence derived from alignment at C-linearis_contig100:291362..292266+ (Chordaria linearis ClinC8C monoicous)
ATGTCGACTTTCGAGAGCGACGAAATCGAGGGTTGGGATGACCTCACTCC
AGCGTTGCAGCAGCTGTTGAAGACACAGCACGATGCCATCGCCAACCAGC
AAGGGGAACTGGAGCTTCTACGGTTCCAGAAACAAGAACAACAACAACGA
GACACTTCGGAGGCAGCCGCGCAGCAGCGGACTGACACTCCAGTTCGGCA
TGGGGCGGACACGGGAGCATCCTCATCGGCACCAGCTGCACGAGAGGAGC
CGCGGCCGACACCCGGAGGACAAGACGAAGAAGAAGCACAAGATGTTGAA
GACCAGGAAGCAACCGAGACTCAGAGCCGGGAGAACCCTGATGAGACACC
AGAGGCAATAACTCCACTCCCCCCAATAATATCATCCCTCCAACCACGGG
AGAAGGCATCCCTCCCGTCACGGGAGACGGCACTGGCGCCAGCGTTAGAA
ATATATATGGAAGGTGGGTGTGACGTGCGGGCTGACAACGAGTTAGACCG
CATGGAGAGAGGATGTGCTGGGTGTGCGGTCACACCTGCTGCAGTGCAAT
GTCGACTTTCGAGAGCGACGAAATCGAGGGTTGGGATGACCTCACTCCAG
CGTTGCAGCAGCTGTTGAAGACACAGCACGATGCCATCGCCAACCAGCAA
GGGGAACTGGAGCTTCTACGGTTCCAGAAACAAGAACAACAACAACGAGA
CACTTCGGAGGCAGCCGCGCAGCAGCGGACTGACACTCCAGTTCGGCATG
GGGCGGACACGGGAGCATCCTCATCGGCACCAGCTGCACGAGAGGAGCCG
CGGCCGACACCCGGAGGACAAGACGAAGAAGAAGCACAAGATGTTGAAGA
CCAGGAAGCAACCGAGACTCAGAGCCGGGAGAACCCTGATGAGACACCAG
AGGCAATAACTCCACTCCCCCCAATAATATCATCCCTCCAACCACGGGAG
AAGGCATCCCTCCCGTCACGGGAGACGGCACTGGCGCCAGCGTTAGAAAT
ATATATGGAAGGTGGGTGTGACGTGCGGGCTGACAACGAGTTAGACCGCA
TGGAGAGAGGATGTGCTGGGTGTGCGGTCACACCTGCTGCAGTGCAGATC
CGGTTGTCTTCAAACCGGAGAGCAGGTCACAACAACATCAACAGCAGTGT
ACCGCATGGGAGGAACTGGCGGCTCAGCCGGAGGAGAGCTGGTGGGTTAA
GCATGTGAGATCCGGTTGTCTTCAAACCGGAGAGCAGGTCACAACAACAT
CAACAGCAGTGTACCGCATGGGAGGAACTGGCGGCTCAGCCGGAGGAGAG
CTGGTGGGTTAAGCATGTGA back to top
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