mRNA_C-linearis_contig100.687.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig100.687.1 vs. uniprot
Match: A0A6H5JNE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE6_9PHAE) HSP 1 Score: 478 bits (1229), Expect = 1.770e-161 Identity = 277/436 (63.53%), Postives = 320/436 (73.39%), Query Frame = 1 Query: 22 MSWCLMIAVLLSGPAVTPCGGT--VYGGSARPSYGMRSPGEDSGSGAIRRDSAAPGAFAIASGDHGGGAEALRRFASTRAMKTGTTIAGVVFEGGVVLGADTRATQGKTVCDRNCDKIHILAANIACCGAGTTADAVRITEGARLALLRMAGEMQACLPSSRFPLTRNQASNGDSGSEGDSNSSDVPLATRDSVLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGEHLYQ---IHEGGSFAEVDFTAMGSGSLAALSVLERGHRENLSEEEAKELVLQAIAAGIDNDLGSGSNIDVCVITHKRGLEHHRGAWRDPGVGDDAGAGRQLAQVLGTTGMGCAQHAATFPRKMEAAHQRQQQQQEGQRFDANVDVVEVVEVGGEDGSRAWVGDVRRRTREKSVMKVDHRDGGALRSFRSSALDDKVELL 1314
MSWCL+I +LL P + PCGG+ V+ A P+ + A G + GGAEALRRFASTRAMKTGTTIAGVVFEGGVVLGADTRAT GKTVCDRNCDKIHILA+NIACCGAGT+ADAVRITEGARLALLRMA EMQACLPSSR PL ++Q S ++G+ PLA+ DS LD VQR++LRV AAA LL+RHLFRYQGTVSAALVLGGVD IGEH+YQ IHEGGS AEV+FTAMGSGSLAALSVLERG+REN++E+EAKELVL+ IAAGIDNDLGSGSNID+CVIT +RGLEHHRGAW DPG+ DD A R+L + + + P +++A+ + DV+ VGGE GS AWVG+VRRR REKSVMKVDH D GALR +R SALDDK+E+L
Sbjct: 1 MSWCLLIVLLLGAPFLPPCGGSLHVFYSGATPTGSA--------------EGATAGLLGASDRSMEGGAEALRRFASTRAMKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITEGARLALLRMAREMQACLPSSRSPLLQSQ-----SRADGER-----PLASCDSGLDEVQRKHLRVGAAALLLERHLFRYQGTVSAALVLGGVDVIGEHIYQAPLIHEGGSLAEVEFTAMGSGSLAALSVLERGYRENMTEQEAKELVLEGIAAGIDNDLGSGSNIDLCVITAERGLEHHRGAWTDPGLDDDGIAARELPEGI----------ESWQPNQLDASDDTES---------GGFDVI----VGGEGGSGAWVGNVRRRNREKSVMKVDHDDDGALRRYRCSALDDKIEVL 389
BLAST of mRNA_C-linearis_contig100.687.1 vs. uniprot
Match: D7FTB7_ECTSI (Proteasome subunit beta 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTB7_ECTSI) HSP 1 Score: 380 bits (975), Expect = 3.310e-124 Identity = 211/280 (75.36%), Postives = 230/280 (82.14%), Query Frame = 1 Query: 256 MKTGTTIAGVVFEGGVVLGADTRATQGKTVCDRNCDKIHILAANIACCGAGTTADAVRITEGARLALLRMAGEMQACLPSSRFPLTRNQASNGDSGSEGDSNSSDVPLATRDSVLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGEHLYQIHEGGSFAEVDFTAMGSGSLAALSVLERGHRENLSEEEAKELVLQAIAAGIDNDLGSGSNIDVCVITHKRGLEHHRGAWRDPGVGDDAGAGRQLAQVLGTTG------MGCAQHAATFP 1077
MKTGTTIAGVVFEGGVVLGADTRAT GKTVCDRNCDKIHILA+NIACCGAGT+ADAVRITEGARLALLRMA EMQACLPSSR PL + Q S D + LA+ DS LD VQR++LRV AAA LLKRHLFRYQGTVSAALVLGGVD IGEH+YQIHEGGS AEV+FTAMGSGSLAALSVLERG+RENL+E+EAKELVL+ IAAGIDNDLGSGSNID+CVIT +RGLEHHRGAW DPG+ DD A R+L + G+ G MG QH P
Sbjct: 1 MKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITEGARLALLRMAREMQACLPSSRSPLLQCQ-------SRADE---ERALASCDSGLDEVQRKHLRVGAAALLLKRHLFRYQGTVSAALVLGGVDVIGEHIYQIHEGGSLAEVEFTAMGSGSLAALSVLERGYRENLTEQEAKELVLEGIAAGIDNDLGSGSNIDLCVITAERGLEHHRGAWTDPGLDDDDIAARELPE--GSRGSENDNKMGQVQHTDARP 268
BLAST of mRNA_C-linearis_contig100.687.1 vs. uniprot
Match: A0A6H5L5A8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5A8_9PHAE) HSP 1 Score: 236 bits (602), Expect = 2.280e-69 Identity = 134/213 (62.91%), Postives = 156/213 (73.24%), Query Frame = 1 Query: 574 PLATRDSVLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGEHLYQ---IHEGGSFAEVDFTAMGSGSLAALSVLERGHRENLSEEEAKELVLQAIAAGIDNDLGSGSNIDVCVITHKRGLEHHRGAWRDPGVGDDAGAGRQLAQVLGTTGMGCAQHAATFPRKMEAAHQRQQQQQEGQRFDANVDVVEVVEVGGEDGSRAWVG 1203
PLA+ DS LD VQR++LRV AAA LLKRHLF+YQGTVSAA VLGGVD IGEH+YQ IHEGGS AEV+FTAMGSGSLAALSVLERG+RENL+E+E KELVL+ IAAGIDNDLGSGSNID+CVIT + GLEHHRGAW DPG+ DD A R+L + + P +++A+ D+ D +VV VGGE GS AWVG
Sbjct: 76 PLASCDSGLDEVQRKHLRVGAAALLLKRHLFQYQGTVSAAFVLGGVDVIGEHIYQAPLIHEGGSLAEVEFTAMGSGSLAALSVLERGYRENLTEQETKELVLEGIAAGIDNDLGSGSNIDLCVITAEGGLEHHRGAWTDPGLDDDGIAARELPEGI----------ERLEPNQLDASG------------DSERDGFDVV-VGGEGGSGAWVG 265
BLAST of mRNA_C-linearis_contig100.687.1 vs. uniprot
Match: A0A836CF21_9STRA (Nucleophile aminohydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF21_9STRA) HSP 1 Score: 197 bits (502), Expect = 3.780e-54 Identity = 120/246 (48.78%), Postives = 151/246 (61.38%), Query Frame = 1 Query: 229 LRRFASTRAMKTGTTIAGVVFEGGVVLGADTRATQGKTVCDRNCDKIHILAANIACCGAGTTADAVRITEGARLALLRMAGEMQACLPSSRFPLTRNQASNGDSGSEGDSNSSDVPLATRDSVLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGEHLYQIHEGGSFAEVDFTAMGSGSLAALSVLERGHRENLSEEEAKELVLQAIAAGIDNDLGSGSNIDVCVITHKRGLEHHR 966
L F + R KTGTTI GVV + +VLGADTRAT +TV D+NC+KIH +AANI CCGAGT+AD R+T ARL ++ MQ+ P+ L+ D VQRQ+ RVAAA LK + VSAA VLGGVD G HLY I + GS ++ F A+GSGS+AALSVLE +++ +SE+ A +LV AIAAGIDNDLGSGSNID+C+I K +E+HR
Sbjct: 39 LDDFIAARVRKTGTTIVGVVCDDCLVLGADTRATNDRTVADKNCEKIHKIAANIYCCGAGTSADCERLTLEARLRMMEFTRLMQSVHPAHSGELST----------------------------DDVQRQHCRVAAAHRFLKNATYHSVEDVSAAFVLGGVDTTGPHLYAIDQDGSSSKGPFAALGSGSMAALSVLESEYQDGISEQAAMDLVCLAIAAGIDNDLGSGSNIDLCII-RKHTVEYHR 255
BLAST of mRNA_C-linearis_contig100.687.1 vs. uniprot
Match: A0A812N4R2_9DINO (Proteasome subunit beta n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812N4R2_9DINO) HSP 1 Score: 193 bits (491), Expect = 2.890e-53 Identity = 117/247 (47.37%), Postives = 146/247 (59.11%), Query Frame = 1 Query: 250 RAMKTGTTIAGVVFEGGVVLGADTRATQGKTVCDRNCDKIHILAANIACCGAGTTADAVRITEGARLALLRMAGEMQACLPSSRFPLTRNQASNGDSGSEGDSNSSDVPLATRDSVLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGEHLYQIHEGGSFAEVDFTAMGSGSLAALSVLERGHRENLSEEEAKELVLQAIAAGIDNDLGSGSNIDVCVITHKRGLEHHRGAWRDPGV 990
+A+KTGTTI GVVF+GGVVLGADTRAT+G V D+NC+KIH LA NI CCGAGT AD IT+ L +S L R Q + T+ RV A LLKR LF+YQG +SAALVLGGVD G HLY ++ GS ++ F +MGSGSLAA+++LE G+++ L+E+EAK LV +AI AGI NDLGSGSN+D+ +I E R GV
Sbjct: 24 KALKTGTTICGVVFDGGVVLGADTRATEGTVVADKNCEKIHYLAPNIHCCGAGTAADTENITQ----------------LTASNLELLRRQ------------------MGTQS-----------RVVTAMTLLKRRLFQYQGHISAALVLGGVDCTGPHLYTVYPHGSTDKLPFVSMGSGSLAAMAMLESGYKDGLTEDEAKALVARAIRAGIFNDLGSGSNVDLTIIRTDGATEQLRSYESQNGV 225
BLAST of mRNA_C-linearis_contig100.687.1 vs. uniprot
Match: A9S713_PHYPA (Proteasome subunit beta n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A9S713_PHYPA) HSP 1 Score: 192 bits (487), Expect = 1.120e-52 Identity = 114/236 (48.31%), Postives = 143/236 (60.59%), Query Frame = 1 Query: 259 KTGTTIAGVVFEGGVVLGADTRATQGKTVCDRNCDKIHILAANIACCGAGTTADAVRITEGARLALLRMAGEMQACLPSSRFPLTRNQASNGDSGSEGDSNSSDVPLATRDSVLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGEHLYQIHEGGSFAEVDFTAMGSGSLAALSVLERGHRENLSEEEAKELVLQAIAAGIDNDLGSGSNIDVCVITHKRGLEHHR 966
KTGTTI G++F+ GV+LGADTRAT+G+ VCD+NC+KIH LA NI+CCGAGT AD +T+ + SS+ L R R+S RV A +LK HLFRYQG VSAALVLGGVD G HL+ ++ GS + F MGSGSLAA+SV E ++ENL++EE E+V AI AGI NDLGSGSN+D+C+IT K G E+ R
Sbjct: 38 KTGTTIVGLIFKDGVILGADTRATEGEIVCDKNCEKIHYLAPNISCCGAGTAADTENVTD----------------MVSSQLVLHRYATG-------------------RES----------RVVTALTMLKSHLFRYQGQVSAALVLGGVDVTGPHLHAVYPHGSTDTLPFATMGSGSLAAMSVFESRYKENLTKEEGMEIVSAAICAGIFNDLGSGSNVDLCIIT-KEGKEYLR 227
BLAST of mRNA_C-linearis_contig100.687.1 vs. uniprot
Match: B8LCN6_THAPS (Proteasome subunit beta (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LCN6_THAPS) HSP 1 Score: 192 bits (487), Expect = 2.050e-52 Identity = 116/228 (50.88%), Postives = 137/228 (60.09%), Query Frame = 1 Query: 253 AMKTGTTIAGVVFEGGVVLGADTRATQGKTVCDRNCDKIHILAANIACCGAGTTADAVRITEGARLALLRMAGEMQACLPSSRFPLTRNQASNGDSGSEGDSNSSDVPLATRDSVLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGEHLYQIHEGGSFAEVDFTAMGSGSLAALSVLERGHRENLSEEEAKELVLQAIAAGIDNDLGSGSNIDVCVI 936
A KTGTTI G+V+ GG+VLGADTR+T TV D+NC+KIH +A NI CCGAGT AD + TE L SS+ L R +G S RV A LLKR LFRYQG VSAALVLGG D G HLYQI+ GS ++ FT MGSGSLAA++V E +R++LSEEEA ELV ++I AGI NDLGSGSN+D CVI
Sbjct: 48 ATKTGTTIVGLVYPGGIVLGADTRSTNDTTVADKNCEKIHYIAPNIYCCGAGTAADTEKSTE----------------LISSQMELLRMNTGDGQS----------------------------RVVTACTLLKRMLFRYQGYVSAALVLGGCDVNGPHLYQIYPHGSTGKLPFTTMGSGSLAAMAVFEADYRDDLSEEEAVELVKRSILAGIFNDLGSGSNVDTCVI 231
BLAST of mRNA_C-linearis_contig100.687.1 vs. uniprot
Match: A0A1S2Y6H9_CICAR (Proteasome subunit beta n=8 Tax=NPAAA clade TaxID=2231382 RepID=A0A1S2Y6H9_CICAR) HSP 1 Score: 190 bits (483), Expect = 3.730e-52 Identity = 115/238 (48.32%), Postives = 142/238 (59.66%), Query Frame = 1 Query: 256 MKTGTTIAGVVFEGGVVLGADTRATQGKTVCDRNCDKIHILAANIACCGAGTTADAVRITEGARLALLRMAGEMQACLPSSRFPLTRNQASNGDSGSEGDSNSSDVPLATRDSVLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGEHLYQIHEGGSFAEVDFTAMGSGSLAALSVLERGHRENLSEEEAKELVLQAIAAGIDNDLGSGSNIDVCVIT--HKRGLEHH 963
+KTGTTI G+VF+ G++LGADTRAT+G V D+NC+KIH +A NI CCGAGT AD +T+ + SS+ L R R+S RV A LLKRHLF YQG VSAALVLGGVD G HL+ I+ GS + F MGSGSLAA+SV E ++E+LS +E +LV++AI AGI NDLGSGSN+DVCVIT HK L +H
Sbjct: 35 LKTGTTIVGLVFQDGIILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTD----------------MVSSQLQLHRYHTG-------------------RES----------RVVTALTLLKRHLFNYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFESKYKESLSRDEGVKLVVEAICAGIFNDLGSGSNVDVCVITKGHKEYLRNH 227
BLAST of mRNA_C-linearis_contig100.687.1 vs. uniprot
Match: A0A835ZKI2_9STRA (Proteasome endopeptidase complex n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKI2_9STRA) HSP 1 Score: 190 bits (483), Expect = 7.910e-52 Identity = 117/242 (48.35%), Postives = 143/242 (59.09%), Query Frame = 1 Query: 250 RAMKTGTTIAGVVFEGGVVLGADTRATQGKTVCDRNCDKIHILAANIACCGAGTTADAVRITE--GARLALLRMAGEMQACLPSSRFPLTRNQASNGDSGSEGDSNSSDVPLATRDSVLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGEHLYQIHEGGSFAEVDFTAMGSGSLAALSVLERGHRENLSEEEAKELVLQAIAAGIDNDLGSGSNIDVCVITHKRGLEHHRG 969
RA TGTTI G V++ G+VLGADTRAT G VCD+NC+KIH LA NI CCGAGT AD + TE ++L LLR++ Q+ RV A +LKR LFRYQG VSAALVLGGVDA G HLY I+ GS ++ + MGSGSLAA+SV E G++E+++EEEA +LV +AI AGI NDLGSGSN D+ VI K + HRG
Sbjct: 53 RAKLTGTTICGCVYKDGIVLGADTRATGGTEVCDKNCEKIHYLAPNIYCCGAGTAADTEKTTELISSQLDLLRLSTGTQS-----------------------------------------------RVVTACTMLKRMLFRYQGHVSAALVLGGVDATGPHLYNIYPHGSSDKLPYVTMGSGSLAAMSVFETGYKEDMTEEEATDLVKEAILAGIFNDLGSGSNCDITVI-RKGEVSRHRG 246
BLAST of mRNA_C-linearis_contig100.687.1 vs. uniprot
Match: C1EBX1_MICCC (Proteasome subunit beta n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EBX1_MICCC) HSP 1 Score: 190 bits (483), Expect = 8.140e-52 Identity = 110/229 (48.03%), Postives = 135/229 (58.95%), Query Frame = 1 Query: 253 AMKTGTTIAGVVFEGGVVLGADTRATQGKTVCDRNCDKIHILAANIACCGAGTTADAVRITEGARLALLRMAGEMQACLPSSRFPLTRNQASNGDSGSEGDSNSSDVPLATRDSVLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGEHLYQIHEGGSFAEVDFTAMGSGSLAALSVLERGHRENLSEEEAKELVLQAIAAGIDNDLGSGSNIDVCVIT 939
AMKTGTTI GV F+GGVVLGADTR+T G+TV D+NC+KIH +A NI CCGAGT AD +T G + + L R R RV A +LK HLF+YQG V AALVLGGVD G HL+ +H GS + F MGSGSLAA++V E +E+++EEEAKE+V ++I AGI NDLGSGSN+D+CVIT
Sbjct: 44 AMKTGTTITGVCFKGGVVLGADTRSTNGETVADKNCEKIHYIAPNIYCCGAGTAADTEAVT-----------GMIASALELHRLATKRKS----------------------------------RVVTALTMLKSHLFKYQGHVGAALVLGGVDINGPHLFSVHPHGSSDSLPFATMGSGSLAAMAVFEADFKEDMTEEEAKEIVARSIRAGIFNDLGSGSNVDLCVIT 227 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig100.687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig100.687.1 >prot_C-linearis_contig100.687.1 ID=prot_C-linearis_contig100.687.1|Name=mRNA_C-linearis_contig100.687.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=433bp MMSWCLMIAVLLSGPAVTPCGGTVYGGSARPSYGMRSPGEDSGSGAIRRDback to top mRNA from alignment at C-linearis_contig100:205472..209856+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig100.687.1 ID=mRNA_C-linearis_contig100.687.1|Name=mRNA_C-linearis_contig100.687.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4385bp|location=Sequence derived from alignment at C-linearis_contig100:205472..209856+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig100:205472..209856+ >mRNA_C-linearis_contig100.687.1 ID=mRNA_C-linearis_contig100.687.1|Name=mRNA_C-linearis_contig100.687.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2598bp|location=Sequence derived from alignment at C-linearis_contig100:205472..209856+ (Chordaria linearis ClinC8C monoicous)back to top |