Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 352 |
| Cds size | 300 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927352.7899144-UTR-C-linearis_contig100:21428..21480 | 1622927352.7899144-UTR-C-linearis_contig100:21428..21480 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig100 21429..21480 - |
| 1690879646.8138828-UTR-C-linearis_contig100:21428..21480 | 1690879646.8138828-UTR-C-linearis_contig100:21428..21480 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig100 21429..21480 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927352.8056376-CDS-C-linearis_contig100:21480..21665 | 1622927352.8056376-CDS-C-linearis_contig100:21480..21665 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig100 21481..21665 - |
| 1690879646.8940756-CDS-C-linearis_contig100:21480..21665 | 1690879646.8940756-CDS-C-linearis_contig100:21480..21665 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig100 21481..21665 - |
| 1622927352.816146-CDS-C-linearis_contig100:21946..22061 | 1622927352.816146-CDS-C-linearis_contig100:21946..22061 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig100 21947..22061 - |
| 1690879646.9122734-CDS-C-linearis_contig100:21946..22061 | 1690879646.9122734-CDS-C-linearis_contig100:21946..22061 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig100 21947..22061 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig100.679.1 >prot_C-linearis_contig100.679.1 ID=prot_C-linearis_contig100.679.1|Name=mRNA_C-linearis_contig100.679.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=100bp
ITFWVCVREISTEGNRRVLTEATTGAEAGTTSEDGSHAGSNDKLSSSGVA
SHGQSRVASLFSPSNVWSSRSRQHQVVAIETSTTACTMIGRRRTMCGAK* back to topmRNA from alignment at C-linearis_contig100:21429..22061- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig100.679.1 ID=mRNA_C-linearis_contig100.679.1|Name=mRNA_C-linearis_contig100.679.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=633bp|location=Sequence derived from alignment at C-linearis_contig100:21429..22061- (Chordaria linearis ClinC8C monoicous)
ATAACGTTCTGGGTGTGTGTGCGGGAGATTTCTACGGAGGGGAATCGACG
GGTCCTTACAGAAGCAACAACAGGAGCAGAAGCAGGAACAACTTCAGAAG
ATGGGAGTCACGCTGGTACGTAGTACGTCCTTAAGAGCCAGCCAGAACAC
CCAGAAAAACACTCATTGCAAAACCAAAACAACAGCGGCGGAGACGCGAT
GCTGCTGGCGGCGATAACGAAAAAAGTGAAGACGATTCTCATCTTTGCCG
TGGCCGTTCTAGAACAAGTCGACTGCATGCATGCTTGTCTTTGCGATGGC
GAGCCGGTACGGGCTCGAGACACCGTTATGCTTTTCGTCAGCCCGATGAC
CCTTGTCCCCCCCATCTGGAACATCGTCAACGTCATGATACACCAGGGTC
GAACGATAAGTTGTCCTCCAGCGGCGTTGCCAGCCATGGGCAATCCAGGG
TGGCATCACTTTTTTCTCCGTCGAACGTTTGGAGTTCTCGCAGTCGGCAG
CACCAGGTGGTTGCGATCGAGACGTCTACGACTGCATGCACCATGATTGG
ACGGCGACGGACGATGTGTGGGGCAAAATAGAATGTTGCTGCTCTTGCTC
CGCACTGCGCCAGTTTCGGAAAAGCACCCCCAC back to topCoding sequence (CDS) from alignment at C-linearis_contig100:21429..22061- >mRNA_C-linearis_contig100.679.1 ID=mRNA_C-linearis_contig100.679.1|Name=mRNA_C-linearis_contig100.679.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at C-linearis_contig100:21429..22061- (Chordaria linearis ClinC8C monoicous)
ATAACGTTCTGGGTGTGTGTGCGGGAGATTTCTACGGAGGGGAATCGACG
GGTCCTTACAGAAGCAACAACAGGAGCAGAAGCAGGAACAACTTCAGAAG
ATGGGAGTCACGCTGATAACGTTCTGGGTGTGTGTGCGGGAGATTTCTAC
GGAGGGGAATCGACGGGTCCTTACAGAAGCAACAACAGGAGCAGAAGCAG
GAACAACTTCAGAAGATGGGAGTCACGCTGGGTCGAACGATAAGTTGTCC
TCCAGCGGCGTTGCCAGCCATGGGCAATCCAGGGTGGCATCACTTTTTTC
TCCGTCGAACGTTTGGAGTTCTCGCAGTCGGCAGCACCAGGTGGTTGCGA
TCGAGACGTCTACGACTGCATGCACCATGATTGGACGGCGACGGACGATG
TGTGGGGCAAAATAGGGTCGAACGATAAGTTGTCCTCCAGCGGCGTTGCC
AGCCATGGGCAATCCAGGGTGGCATCACTTTTTTCTCCGTCGAACGTTTG
GAGTTCTCGCAGTCGGCAGCACCAGGTGGTTGCGATCGAGACGTCTACGA
CTGCATGCACCATGATTGGACGGCGACGGACGATGTGTGGGGCAAAATAG back to top
|