mRNA_C-linearis_contig10.678.1 (mRNA) Chordaria linearis ClinC8C monoicous
|
Overview
Homology
BLAST of mRNA_C-linearis_contig10.678.1 vs. uniprot
Match: A0A6H5JU73_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU73_9PHAE) HSP 1 Score: 515 bits (1327), Expect = 1.360e-173 Identity = 255/360 (70.83%), Postives = 288/360 (80.00%), Query Frame = 1
Query: 106 RSDSSCISWRRFQNLIEGVKGVTWVCKFIRPAETRWMVVWDAAALLEERWDAVRWLHMDWAASKLLGTPFMDYWYKSLCMLDDPLMRVHAKFSVALRKVVLSWAYNWIRGEGGYFVKGTGGVAERLPPGMRLAEAADFSLLLVKRLEELRAHPRKYFPELLAFAETTLKEAE----------------------LVHFMMNFGTGESGFFWEMIERWLKWMDMHQHLPYSMARLACSSFYESKWVGSEEAFEHAVGQEFARALLLVLWPELYEDAEWRSWEEEHTFLEVLEGDLLEATTTQAKDKLTLGMFSKLSASAGFREELEKYASSAHEKR-VVIDVLGENQTARVSGFEMIWNFP 1116
RSDSSCISW RFQNL+ G KGV W CKFIRPAETRWMVVWDAAALLE+RWD VRWLH++WAA+KLLGTPFMDYW+KSLCMLDDPL+RVHAKF VALRKVVLSWAYNWIRGEGGY ++G GGVAERLP GMRLA+ ADFSLLLV+RLEELR HP+KYFP+LLA+AE TL E E L HFM NF +SG F EMI RW KWMDMHQHLPYSMARLACSSF+E KW GSE+A EHAVGQE+ARA LL LWPEL E AEW W+EEH +LE+L DL EA TT+ KD+LT GMFSKL+ASA FR E+E+Y+ SA EK+ +V+D E+Q RVSGF+MIW+FP
Sbjct: 285 RSDSSCISWERFQNLVFGCKGVKWGCKFIRPAETRWMVVWDAAALLEDRWDEVRWLHLEWAAAKLLGTPFMDYWFKSLCMLDDPLIRVHAKFCVALRKVVLSWAYNWIRGEGGYLLEGRGGVAERLPAGMRLADIADFSLLLVERLEELRMHPKKYFPDLLAWAEKTLSEEEVSANAAQTLLLFDPVPYCPMLQLAHFMRNFQNEKSGLFREMIARWTKWMDMHQHLPYSMARLACSSFFEGKWAGSEKAIEHAVGQEYARASLLALWPELNEGAEWVGWDEEHEYLEILRDDLSEAETTEEKDELTFGMFSKLNASAEFRGEVERYSLSAREKKEIVVDDDAESQAPRVSGFDMIWSFP 644
BLAST of mRNA_C-linearis_contig10.678.1 vs. uniprot
Match: A0A6H5JN38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN38_9PHAE) HSP 1 Score: 409 bits (1052), Expect = 8.340e-137 Identity = 223/373 (59.79%), Postives = 243/373 (65.15%), Query Frame = 1
Query: 1 MECQFFMGPLGKGSWHEWEDHHLVALLGTLWYNTSRSDSSCISWRRFQNLIEGVKGVTWVCKFIRPAETRWMVVWDAAALLEERWDAVRWLHMDWAASKLLGTPFMDYWYKSLCMLDDPLMRVHAKFSVALRKVVLSWAYNWIRGEGGYFVKGTGGVAERLPPGMRLAEAADFSLLLVKRLEELRAHPRKYFPELLAFAETTLKEAELVHFMMNFGTGESGFFWEMIERWLKWMDMHQHLPYSMARLACSSFYESKWVGSEEAFEHAVGQEFARALLLVLWPELYEDAEWRSWEEEHTFLEVLEGDLLEATTTQAKDKLTLGMFSKLSASAGFREELEKYASSAHEKR-VVIDVLGENQTARVSGFEMIWNFP 1116
MEC+FFMGPLGKGSWHEWED+HLVALL TLWYN SRSDSSCISWRR +NL+ KGV W+CKFIRPAETRWMV+ DAAALLEERWD +S MLDDPL+RVHAKF VALRK VLSWAYNWIRGEGGYF++GTGGVAERLPPGMRLAEAADFSLLLVKRLE + SM RLACSSFYE KW GSEE FEHAVGQE ARALLL WP YE EW+ WEE++TF E +KLTLGMFSKL+ASA FREELE+YA+SAHEK+ VV DV ENQT RVSGF+MIW FP
Sbjct: 1 MECEFFMGPLGKGSWHEWEDNHLVALLATLWYNISRSDSSCISWRRVKNLVFRAKGVMWICKFIRPAETRWMVIRDAAALLEERWD------------------------ESTYMLDDPLIRVHAKFCVALRKAVLSWAYNWIRGEGGYFLEGTGGVAERLPPGMRLAEAADFSLLLVKRLERSQRM-------------------------------------------------------SMTRLACSSFYEGKWAGSEEGFEHAVGQEVARALLLAFWPNRYESTEWKGWEEQNTFRE---------------NKLTLGMFSKLAASAEFREELERYAASAHEKKKVVSDVDVENQTPRVSGFDMIWTFP 279
BLAST of mRNA_C-linearis_contig10.678.1 vs. uniprot
Match: D7FIQ1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ1_ECTSI) HSP 1 Score: 321 bits (822), Expect = 2.340e-101 Identity = 172/345 (49.86%), Postives = 225/345 (65.22%), Query Frame = 1
Query: 1 MECQFFMGPLGKGSWHEWEDHHLVALLGTLWYNTSRSDSSCISWRRFQNLIEGV--KGVTWVCKFIRPAETRWMVVWDAAALLEERWDAVRWLHMDWAASKLLGTPFMDYWYKSLCMLDDPLMRVHAKFSVALRKVVLSWAYNWIRGEGGYFVKGTGGVAERLPPGMRLAEAADFSLLLVKRLEELRAHPRKYFPELLAFAETTLKEAELVHFMMNFGTGESGFFWEMIERWLKWMDMHQHLPYSMARLACSSFYESKWVGSEEAFEHAVGQEFARALLLVLWPELYEDAEWRSWEEEHTFLEVLEGDLLEATTTQAKDKLTLGMFSKLSASAGFREELEKYASS 1029
M +FMGPLGKGSWHEWE H+ +LLG +WYNTSRS+SS +++R++ +++ W+ KF+RPAETRWMVV D A LL +RW+ V WL ++AA L T F +YW +S ML DPL+RVH F+ L +++ WAYNWIRG+GG+F+KG G V +L PGMRL E ADFS LL+ +LE +R P+ YF +L +TTL EA FM NF + GFF E +RW+KWM+ HQ LP SMAR+ C SF+ + E A E AVG EFARA L V W LYE E R+ E E + L DL T + KD+LT G+FS++ + R ELE+YA+S
Sbjct: 1 MTSVYFMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSESSNANFQRWKRVVQQQFPDAKPWLIKFVRPAETRWMVVMDGAKLLCKRWEQVEWLFCEYAARNLNKTTFRNYWLQSAYMLRDPLVRVHVMFTARLGELLFDWAYNWIRGKGGFFLKGEG-VGRQLFPGMRLVEVADFSRLLLVKLETIRKDPKTYFAAVLERVQTTLSEAMAKLFMTNFSE-DKGFFAEFKQRWIKWMERHQQLPLSMARIGCPSFFARTGIMGEGAVEQAVGPEFARAFLHVAWSALYE-GEPRT-EREREYRTQLVKDLGGTTDARRKDELTFGLFSRIDSDRSVRNELEQYANS 341
BLAST of mRNA_C-linearis_contig10.678.1 vs. uniprot
Match: A0A6H5JI13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI13_9PHAE) HSP 1 Score: 297 bits (761), Expect = 1.150e-92 Identity = 169/346 (48.84%), Postives = 213/346 (61.56%), Query Frame = 1
Query: 1 MECQFFMGPLGKGSWHEWEDHHLVALLGTLWYNTSRSDSSCISWRRFQNLIEGV--KGVTWVCKFIRPAETRWMVVWDAAALLEERWDAVRWLHMDWAASKLLGTPFMDYWYKSLCMLDDPLMRVHAKFSVALRKVVLSWAYNWIRGEGGYFVKGTGGVAERLPPGMRLAEAADFSLLLVKRLEELRAHPRKYFPELLAFAETTLKEAELVH-FMMNFGTGESGFFWEMIERWLKWMDMHQHLPYSMARLACSSFYESKWVGSEEAFEHAVGQEFARALLLVLWPELYEDAEWRSWEEEHTFLEVLEGDLLEATTTQAKDKLTLGMFSKLSASAGFREELEKYASS 1029
M FMGPLGKGSWHEWE H+ +LLG +WYNTSRS+ S S++R++ ++ W+ KFIRPAETRWMVV D A LL ERW+ V WL ++AA L T F +YW +S CML DPL+RVH F+ L +++ WAYNWI G+GG+F+KG G V RL P MRL EAADFS LL+++LE +R P+ Y LL TTL + F + G+ F E +RW+K M HQ LP SMAR+ C SFY + A E AVG EFARA V WP LYE E R+ E E + L DL T + KD+LTLG+FS + R ELE+YA+S
Sbjct: 1 MTSALFMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSEPSNASFQRWKRVVAAQFPNAKPWLIKFIRPAETRWMVVMDGAKLLCERWEQVEWLFCEYAARNLNKTTFRNYWVQSACMLRDPLVRVHVMFTARLGELLFDWAYNWIHGKGGFFLKGEG-VGRRLFPAMRLVEAADFSCLLLQKLETIRKDPQTYVAALLDRVRTTLSDPMRGESFRVELQRGQF-FIAEFKKRWIKSMQRHQELPLSMARIGCPSFYARTGIMGGGAVEQAVGPEFARAFPHVAWPGLYE-GEPRT-ERERQYRTQLAKDLGGTTEARRKDELTLGLFSCIDGDLSVRSELEQYANS 342
BLAST of mRNA_C-linearis_contig10.678.1 vs. uniprot
Match: A0A6H5JW26_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW26_9PHAE) HSP 1 Score: 228 bits (582), Expect = 4.290e-69 Identity = 114/217 (52.53%), Postives = 144/217 (66.36%), Query Frame = 1
Query: 1 MECQFFMGPLGKGSWHEWEDHHLVALLGTLWYNTSRSDSSCISWRRFQNLIEGV--KGVTWVCKFIRPAETRWMVVWDAAALLEERWDAVRWLHMDWAASKLLGTPFMDYWYKSLCMLDDPLMRVHAKFSVALRKVVLSWAYNWIRGEGGYFVKGTGGVAERLPPGMRLAEAADFSLLLVKRLEELRAHPRKYFPELLAFAETTLKEAELVHFMMNF 645
M FMGPLGKGSWHEWE H+ +LLG +WYNTSRS SS ++R++ ++ W+ KFIRPAETRWMVV D A LL ERW+ V WL ++AA L T F +YW +S CML DPL+RVH F+ L +++ WAYNWI G+GG+F+KG G V RL PGMRL E ADFS LL+++LE + P+ YF LL TTL + FM+NF
Sbjct: 1 MTSALFMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSGSSNGKFQRWKRVVAAQFPNAKPWLIKFIRPAETRWMVVMDGAKLLCERWEQVEWLFCEYAARNLNKTTFRNYWVQSACMLRDPLVRVHVMFTARLGELLFDWAYNWIHGKGGFFLKGEG-VGRRLSPGMRLVEVADFSRLLLQKLETIHKDPQTYFAALLDRVRTTLSDPMAKVFMLNF 216
BLAST of mRNA_C-linearis_contig10.678.1 vs. uniprot
Match: A0A6H5L8G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8G1_9PHAE) HSP 1 Score: 217 bits (553), Expect = 4.410e-64 Identity = 126/286 (44.06%), Postives = 161/286 (56.29%), Query Frame = 1
Query: 1 MECQFFMGPLGKGSWHEWEDHHLVALLGTLWYNTSRSDSSCISWRRFQNLIEGVKGVTWVCKFIRPAETRWMVVWDAAALLEERWDAVRWLHMDWAASKLLGTPFMDYWYKSLCMLDDPLMRVHAKFSVALRKVVLSWAYNWIRGEGGYFVKGTGGVAERLPPGMRLAEAADFSLLLVKRLEELRAHPRKYFPELLAFAETTLKEAELVHFMMNFGTGESGFFWEMIERWLKWMDMHQHLPYSMARLACSSFYESKWVGSEEAFEHAVGQEFARALLLVLWPELYE 858
M +FMGPLGKGSWHEWE H+ +LLG +WY+TSRS+SS ++ +RW V L ++AA L T F +YW +S ML +PL+RVH F+ L +++ WA NWIRG+GG+F+KG G V RL PGMRL E AD S LL+ +LE +R P+ YF +L TTL E FM NF + FF E +RW+KWM+ HQ LP SMAR+AC SFY + ++ A E G EFARA L V WP LYE
Sbjct: 1 MTSLYFMGPLGKGSWHEWERDHVFSLLGMVWYSTSRSESSNANF--------------------------------------QRWKRVEKLVREYAARYLNKTTFRNYWLQSAYMLRNPLVRVHVVFTARLGELLFDWANNWIRGKGGFFLKGEG-VGRRLFPGMRLVEVADCSRLLLLKLETIRKDPKTYFAAVLERVRTTLSEPMEKLFMTNFSE-DKVFFAEFKKRWIKWMERHQQLPLSMARIACPSFYARTGIMADGAVE---GPEFARAFLHVAWPGLYE 243
BLAST of mRNA_C-linearis_contig10.678.1 vs. uniprot
Match: A0A6H5JSZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ3_9PHAE) HSP 1 Score: 215 bits (547), Expect = 2.680e-63 Identity = 105/148 (70.95%), Postives = 121/148 (81.76%), Query Frame = 1
Query: 676 MIERWLKWMDMHQHLPYSMARLACSSFYESKWVGSEEAFEHAVGQEFARALLLVLWPELYEDAEWRSWEEEHTFLEVLEGDLLEATTTQAKDKLTLGMFSKLSASAGFREELEKYASSAHEKR-VVIDVLGENQTARVSGFEMIWNFP 1116
MI RW WMDMHQHLPYSMARLACSSF+E KW GSE+AFEHAVGQE+ARA LL LWPELYE AEW W+EEH +LE+L DL EA TT+ KD+LT GMFSKL+ASA FR E+E+YA SA EK+ +V+D ENQ RVSGF+MIW+FP
Sbjct: 1 MIARWTIWMDMHQHLPYSMARLACSSFFEGKWAGSEKAFEHAVGQEYARASLLALWPELYEGAEWVGWDEEHEYLEILRDDLSEAETTEEKDELTFGMFSKLNASAEFRGEVERYALSAREKKEIVVDDDAENQAPRVSGFDMIWSFP 148
BLAST of mRNA_C-linearis_contig10.678.1 vs. uniprot
Match: A0A6H5KH75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH75_9PHAE) HSP 1 Score: 215 bits (547), Expect = 4.530e-60 Identity = 136/386 (35.23%), Postives = 177/386 (45.85%), Query Frame = 1
Query: 1 MECQFFMGPLGKGSWHEWEDHHLVALLGTLWYNTSRSDSSCISWRRFQNLIEGV--KGVTWVCKFIRPAETRWMVVWDAAALLEERWDAVRWLHMDWAASKL------------------------------LG---------------------------------TPFMDYWYKSLCMLDDPLMRVHAKFSVALRKVVLSWAYNWIRGEGGYFVKGTGGVAERLPPGMRLAEAADFSLLLVKRLEELRAHPRKYFP----------------------------------------------------ELLAFAETTLKEAELVH----------------FMMNFGTGESGFFWEMIERWLKWMDMHQHLPYSMARLACSSFY 759
M FMGPLGKGSWHEWE H+ +LLG +WYNTSRS+SS +++R++ ++ W+ KFIRPAETRWMVV D A LL ERW+ V WL ++AA L LG T + +YW +S CML DPL+RVH F+ L +++ WAYNWI G+GG+F+KG G V RL PGMRL E ADFS LL+++LE + P+ YF E+ F+ L+E E + FM+NF +S FF E+ +RW+KWM HQ LP SMAR+ C SFY
Sbjct: 1 MTSALFMGPLGKGSWHEWERDHIFSLLGMVWYNTSRSESSNANFQRWKRIVAAQFPNAKPWLIKFIRPAETRWMVVMDGAKLLCERWEQVEWLFCEYAARNLNKTTFRNYWVQSACMLRDPLVRVHVMFTARLGELLFDWAAKGSXCERWEQVEWLFCEYAAGNLNKTTYRNYWVQSACMLRDPLVRVHVMFTARLGELLFDWAYNWIHGKGGFFLKGEG-VGRRLSPGMRLVEVADFSRLLLQKLETIHKDPQTYFXQQGYLAHPGNTFHXXXXXXXXXXXVPHNRTTTWHCYKYIYHGRRLFPGMRSVEVADFSRLLLQELETIRKDPQTYFAALLDRAKLFMLNFSE-DSFFFAEVKKRWIKWMQRHQELPLSMARIGCPSFY 384
BLAST of mRNA_C-linearis_contig10.678.1 vs. uniprot
Match: A0A6H5JMW8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMW8_9PHAE) HSP 1 Score: 210 bits (535), Expect = 8.900e-60 Identity = 127/272 (46.69%), Postives = 161/272 (59.19%), Query Frame = 1
Query: 214 MVVWDAAALLEERWDAVRWLHMDWAASKLLGTPFMDYWYKSLCMLDDPLMRVHAKFSVALRKVVLSWAYNWIRGEGGYFVKGTGGVAERLPPGMRLAEAADFSLLLVKRLEELRAHPRKYFPELLAFAETTLKEAELVHFMMNFGTGESGFFWEMIERWLKWMDMHQHLPYSMARLACSSFYESKWVGSEEAFEHAVGQEFARALLLVLWPELYEDAEWRSWEEEHTFLEVLEGDLLEATTTQAKDKLTLGMFSKLSASAGFREELEKYASS 1029
MVV D A LL ERW+ V L D+A + L T +YW +S ML DP VH F+ L++++ WAYNWI G+GG+F+KG G V RL PGMRL E ADFS LL+++LE +R P+ YF LL TL + + FM+ F + FF E +RW+KWM HQ LP SMAR+ C SFY + A E AVG EFARA L V WP LYE E R+ E E + L DL T + KD+LT G+FS + R ELE+YA+S
Sbjct: 1 MVVIDGAKLLCERWEQVERLFCDFARN-LNKTTVRNYWVQSAYMLRDPFFHVHVMFTARLKELLFDWAYNWIHGKGGFFLKGEG-VDRRLFPGMRLVEVADFSRLLLQKLETIRKDPKTYFAALLDRVRATLSDPMVKFFMLAFSE-DRVFFAEFKKRWIKWMQRHQELPLSMARIGCPSFYARTGIMGGGAVEQAVGPEFARAFLHVAWPGLYE-GEPRT-EREREYRTQLVKDLGGTTEARRKDELTFGLFSCIDGDLSVRSELEQYANS 267
BLAST of mRNA_C-linearis_contig10.678.1 vs. uniprot
Match: A0A6H5JQF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQF6_9PHAE) HSP 1 Score: 201 bits (510), Expect = 1.100e-56 Identity = 122/272 (44.85%), Postives = 157/272 (57.72%), Query Frame = 1
Query: 214 MVVWDAAALLEERWDAVRWLHMDWAASKLLGTPFMDYWYKSLCMLDDPLMRVHAKFSVALRKVVLSWAYNWIRGEGGYFVKGTGGVAERLPPGMRLAEAADFSLLLVKRLEELRAHPRKYFPELLAFAETTLKEAELVHFMMNFGTGESGFFWEMIERWLKWMDMHQHLPYSMARLACSSFYESKWVGSEEAFEHAVGQEFARALLLVLWPELYEDAEWRSWEEEHTFLEVLEGDLLEATTTQAKDKLTLGMFSKLSASAGFREELEKYASS 1029
MV D A LL +RW+ V WL +AA L T F +YW +S+ +L DP++RVH + L +++ WAYNWIRG+GG+F+K GV RL PGMRL E ADFS LL+ +LE +R P YF F T E + GFF +RW+KWM+ HQ LP SMAR+ C SFY + +E A E AVG +FARA L V WP LY D E R+ E E F L E T + KD+LT G+FS + + R ELE+YA+S
Sbjct: 1 MVDTDRAKLLCDRWEQVSWLFCKYAARYLNKTTFRNYWLQSVYLLRDPILRVHVMLTARLGELLFDWAYNWIRGKGGFFLK-CEGVGRRLFPGMRLVEVADFSRLLLLKLETIRKDPETYFAAEKLFT-TNCSE-------------DKGFFALFKKRWIKWMERHQQLPLSMARIGCPSFYARTGIMAEGAVEQAVGPKFARAFLHVAWPGLY-DGEPRT-EREREFRTQLVKYSGEITEARRKDELTFGLFSCIDSDLSVRNELEQYANS 255 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.678.1 >prot_C-linearis_contig10.678.1 ID=prot_C-linearis_contig10.678.1|Name=mRNA_C-linearis_contig10.678.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=391bp MECQFFMGPLGKGSWHEWEDHHLVALLGTLWYNTSRSDSSCISWRRFQNLback to top mRNA from alignment at C-linearis_contig10:3794497..3796222- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.678.1 ID=mRNA_C-linearis_contig10.678.1|Name=mRNA_C-linearis_contig10.678.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1726bp|location=Sequence derived from alignment at C-linearis_contig10:3794497..3796222- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:3794497..3796222- >mRNA_C-linearis_contig10.678.1 ID=mRNA_C-linearis_contig10.678.1|Name=mRNA_C-linearis_contig10.678.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2346bp|location=Sequence derived from alignment at C-linearis_contig10:3794497..3796222- (Chordaria linearis ClinC8C monoicous)back to top |