mRNA_C-linearis_contig10.676.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.676.1
Unique NamemRNA_C-linearis_contig10.676.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:3629054..3629713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927325.3672051-CDS-C-linearis_contig10:3629053..36291151622927325.3672051-CDS-C-linearis_contig10:3629053..3629115Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3629054..3629115 -
1690879627.4922647-CDS-C-linearis_contig10:3629053..36291151690879627.4922647-CDS-C-linearis_contig10:3629053..3629115Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3629054..3629115 -
1622927325.3817968-CDS-C-linearis_contig10:3629622..36297131622927325.3817968-CDS-C-linearis_contig10:3629622..3629713Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3629623..3629713 -
1690879627.501777-CDS-C-linearis_contig10:3629622..36297131690879627.501777-CDS-C-linearis_contig10:3629622..3629713Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3629623..3629713 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.676.1prot_C-linearis_contig10.676.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 3629054..3629713 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.676.1

>prot_C-linearis_contig10.676.1 ID=prot_C-linearis_contig10.676.1|Name=mRNA_C-linearis_contig10.676.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=51bp
RLPQPASPQLPPGQEPGRKPRLRRKGCHQGHRQGVFHVRARVAHHRQGRH
R
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mRNA from alignment at C-linearis_contig10:3629054..3629713-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.676.1 ID=mRNA_C-linearis_contig10.676.1|Name=mRNA_C-linearis_contig10.676.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=660bp|location=Sequence derived from alignment at C-linearis_contig10:3629054..3629713- (Chordaria linearis ClinC8C monoicous)
AGACTACCACAACCAGCATCTCCGCAACTGCCTCCTGGACAAGAACCCGG
ACGGAAACCTCGCCTTCGCCGTAAAGGCTGCCACCAAGGACGTGAGTTGG
CATGAATGCCTGTGTCAAGAATCTTCGGTATTTTATCGTGTAAACCATTG
CTACGCTAGAACGCACTTATTCTCTTAGTTCAGACACACACTAAGACCAG
GATACTATCGTTCAGTCCTGCTATGTTCGCAGTGTTATGCACGCTGTTTT
ATGAAAGAGCGGAGCTTTTGGCCGCTTTGTTGACGAGGGACCACAGCAGC
GTGAACTGGCACGAATATTTGTGTCACAAGGTTTTTTTCTGAACGTCTCC
CCTGTTTTATGAAGGGCGTTTCCCGTCACTCGCGGTGTTACCAAGCATCG
ATGATGTGCTGTAACTTCGCACTACTTTAGAAATGACCTCTATTACAGAC
AACAGCATCTCCTTTGTTTGTGTTTTCGCTGCAGTCTACAGCCAACCCCA
TACAAGTTATGTACTGCTGTGCACGAGCGATGACTCGATTTTTGTCGCTG
ATGGCTGTTTTGTTCCTGTCCATATGGTTTTTGCACACTTTTCGGCAGAT
CGACAGGGAGTGTTCCACGTGCGTGCAAGAGTCGCCCATCATCGTCAAGG
GCGACATCGT
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Coding sequence (CDS) from alignment at C-linearis_contig10:3629054..3629713-

>mRNA_C-linearis_contig10.676.1 ID=mRNA_C-linearis_contig10.676.1|Name=mRNA_C-linearis_contig10.676.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at C-linearis_contig10:3629054..3629713- (Chordaria linearis ClinC8C monoicous)
AGACTACCACAACCAGCATCTCCGCAACTGCCTCCTGGACAAGAACCCGG
ACGGAAACCTCGCCTTCGCCGTAAAGGCTGCCACCAAGGACAGACTACCA
CAACCAGCATCTCCGCAACTGCCTCCTGGACAAGAACCCGGACGGAAACC
TCGCCTTCGCCGTAAAGGCTGCCACCAAGGACATCGACAGGGAGTGTTCC
ACGTGCGTGCAAGAGTCGCCCATCATCGTCAAGGGCGACATCGTATCGAC
AGGGAGTGTTCCACGTGCGTGCAAGAGTCGCCCATCATCGTCAAGGGCGA
CATCGT
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