mRNA_C-linearis_contig10.671.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.671.1
Unique NamemRNA_C-linearis_contig10.671.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig10.671.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 303 bits (777), Expect = 2.480e-97
Identity = 167/224 (74.55%), Postives = 179/224 (79.91%), Query Frame = 1 
Query:    1 DLEGAQYVTGSMTIAKVAELRYGLEAGAKDLRNIAQQGLKETTQKAMEAVRPDVERLLADFTNRWGDGSNILEHKEGKRRQPQGFKLKQVYETAVDPRAKHLYGILPREHADVWRAVASAAVDIALQKHASDKEPASAEAPAPEPIQTPIQTQPGSPGGQEGVPKRPRMSPFEAAAAAHAEAAGDCSVGNSADERREQLEAIADMEVSAFKAAAGIRVWDMKKT 672
            DLEGAQYVTGSMTI K+AELR GLEA   DL+ +AQQGLKETTQKAMEAVRPD E L+ADFTNRWGDGSNILE++EGKRRQPQGFK KQVY TA+DPRAKHLYGI  REHA VWRAVASAAVDIAL KHA DK PASAE PA +P+QT    QP   GG +G  KRPRMS FEAAAA             SADE+REQL AI DMEVSAFKAA GIRVWDM+KT
Sbjct:  253 DLEGAQYVTGSMTIGKMAELREGLEAAITDLKAVAQQGLKETTQKAMEAVRPDAEALMADFTNRWGDGSNILEYREGKRRQPQGFKRKQVYATALDPRAKHLYGIQQREHAGVWRAVASAAVDIALGKHAGDKAPASAEKPASDPVQT----QPAPLGGGQGASKRPRMSAFEAAAAXXXXXXXXXXXXXSADEKREQLVAIVDMEVSAFKAAPGIRVWDMQKT 472
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BLAST of mRNA_C-linearis_contig10.671.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 244 bits (622), Expect = 2.250e-74
Identity = 133/219 (60.73%), Postives = 162/219 (73.97%), Query Frame = 1 
Query:    1 DLEGAQYVTGSMTIAKVAELRYGLEAGAKDLRNIAQQGLKETTQKAMEAVRPDVERLLADFTNRWGDGSNILEHKEGKRRQPQGFKLKQVYETAVDPRAKHLYGILPREHADVWRAVASAAVDIALQKHASDKEPASAEAPAPEPIQTPIQTQPGSPGGQEGVPKRPRMSPFEAAAAAHAEAAGDCSVGNSADERREQLEAIADMEVSAFKAAAGIRVW 657
            DLEGA+YVTGSMT+ K+ ELR GLEA   DLR   + G+  +T++AMEAV PD E L  DF NRWGDGS+ILE++EGKRRQPQGFKL+QV  TAVDPRAKHLYGI   EHA VWRAVA+ AVDIA +K +SD    S  APA +P+ TP    P +PGGQ G PKR R+S FEAAAAAHA AA   + G + DE+REQL ++ D+EV++F+   GI +W
Sbjct:  289 DLEGAKYVTGSMTVPKIGELRNGLEAAIADLRATDRFGISASTREAMEAVLPDAEALWEDFLNRWGDGSSILEYREGKRRQPQGFKLQQVCATAVDPRAKHLYGIRQAEHASVWRAVATKAVDIAAEKFSSDNTATSGSAPAAQPVGTP----PVAPGGQ-GAPKRARLSAFEAAAAAHAGAAASSAGGQTLDEKREQLASVVDLEVASFQTTPGISIW 502
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BLAST of mRNA_C-linearis_contig10.671.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.230e-19
Identity = 57/150 (38.00%), Postives = 89/150 (59.33%), Query Frame = 1 
Query:    4 LEGAQYVTGSMTIAKVAELRYGLEAGAKDLRNIAQQGLKETTQKAMEAVRPDVER----LLADFTNRWGDGSNILEHKEGKRRQPQGFKLKQVYETAVDPRAKHLYGILPREHADVWRAVASAAVDIALQKHASDKEPASAEAPAPEPIQ 441
            LE ++ VT S+  A +A+LR  L+   + L     Q      +  +   + D+ R    L  D + RW DG+++L + EG RRQP+GFK KQV  TA+DPR+K LYGI   EH+DVW AVA+ AV +A++  A++   ++  + +P P++
Sbjct:  191 LEASKGVTVSLVTAYIADLRDELDEAIERL-----QAYSCPAESIVAEAKKDILRCAPALQTDLSRRWRDGTDVLVYTEGPRRQPRGFKKKQVLATALDPRSKSLYGIEETEHSDVWEAVANEAVKVAIEAKATEDTQSAGASSSPIPVE 335
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BLAST of mRNA_C-linearis_contig10.671.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 7.800e-16
Identity = 43/73 (58.90%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:  178 DFTNRWGDGSNILEHKEGKRRQPQGFKLKQVYETAVDPRAKHLYGILPREHADVWRAVASAAVDIALQKHASD 396
            DF NRWGDG NIL +KEG+RRQP GFK  QV  TA+DPR K LYG+   E ADVW+ V   AV IA++   S+
Sbjct:   50 DFINRWGDGRNILIYKEGRRRQPGGFKPVQVLATALDPRTKILYGVDEDEKADVWKLVEEEAVKIAVETRNSE 122
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BLAST of mRNA_C-linearis_contig10.671.1 vs. uniprot
Match: A0A6H5JVE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE5_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 8.380e-16
Identity = 46/83 (55.42%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:  136 AMEAVRPDVERLLADFTNRWGDGSNILEHKEGKRRQPQGFKLKQVYETAVDPRAKHLYGILPREHADVWRAVASA-AVDIALQ 381
            A  AV P ++ L  DF NRWGDG NIL +KEG RRQP GFK  QV  TA+DPR K L+G+   E ADVW+ V    AV IA++
Sbjct:  158 ARAAVMPCIKALRDDFINRWGDGRNILNYKEGPRRQPAGFKPVQVLATALDPRTKILHGVDEDEKADVWKLVQEEEAVKIAVE 240
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LCS5_ECTSI2.480e-9774.55Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5KUY5_9PHAE2.250e-7460.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVI1_9PHAE1.230e-1938.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWI1_9PHAE7.800e-1658.90Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JVE5_9PHAE8.380e-1655.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:3579002..3579696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score321.2
Seed ortholog evalue3.8e-85
Seed eggNOG ortholog2880.D7G5Z0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size695
Cds size693
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927352.199463-CDS-C-linearis_contig10:3579001..35796941622927352.199463-CDS-C-linearis_contig10:3579001..3579694Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3579002..3579694 +
1690879646.382363-CDS-C-linearis_contig10:3579001..35796941690879646.382363-CDS-C-linearis_contig10:3579001..3579694Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3579002..3579694 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.671.1prot_C-linearis_contig10.671.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 3579002..3579694 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.671.1

>prot_C-linearis_contig10.671.1 ID=prot_C-linearis_contig10.671.1|Name=mRNA_C-linearis_contig10.671.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=231bp
DLEGAQYVTGSMTIAKVAELRYGLEAGAKDLRNIAQQGLKETTQKAMEAV
RPDVERLLADFTNRWGDGSNILEHKEGKRRQPQGFKLKQVYETAVDPRAK
HLYGILPREHADVWRAVASAAVDIALQKHASDKEPASAEAPAPEPIQTPI
QTQPGSPGGQEGVPKRPRMSPFEAAAAAHAEAAGDCSVGNSADERREQLE
AIADMEVSAFKAAAGIRVWDMKKTKKAGETV
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mRNA from alignment at C-linearis_contig10:3579002..3579696+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.671.1 ID=mRNA_C-linearis_contig10.671.1|Name=mRNA_C-linearis_contig10.671.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=695bp|location=Sequence derived from alignment at C-linearis_contig10:3579002..3579696+ (Chordaria linearis ClinC8C monoicous)
GACCTGGAGGGGGCTCAGTACGTGACGGGTAGCATGACCATCGCGAAGGT
TGCGGAGTTGAGGTACGGGCTCGAGGCCGGAGCCAAGGACCTGAGGAACA
TTGCACAACAGGGGCTCAAAGAGACTACCCAGAAGGCGATGGAGGCCGTT
CGTCCGGACGTCGAAAGGCTGTTGGCAGATTTCACCAACCGCTGGGGCGA
CGGCTCCAACATCCTCGAGCACAAGGAGGGCAAGAGGCGCCAACCCCAGG
GTTTTAAGCTGAAGCAGGTGTACGAAACGGCTGTCGACCCGAGGGCCAAG
CACCTCTACGGGATCCTGCCTCGGGAGCACGCAGACGTGTGGCGCGCTGT
CGCTAGCGCCGCGGTGGACATTGCTTTACAGAAGCACGCCAGCGACAAGG
AACCCGCCTCCGCGGAGGCACCTGCTCCCGAGCCCATCCAGACGCCCATT
CAGACGCAGCCGGGCTCACCAGGAGGCCAGGAGGGAGTCCCGAAGCGCCC
TCGCATGAGCCCGTTCGAGGCCGCCGCTGCTGCCCACGCCGAGGCTGCAG
GGGATTGCAGTGTTGGCAATTCTGCGGATGAGAGACGGGAGCAACTGGAG
GCCATCGCGGACATGGAGGTCTCGGCCTTCAAGGCCGCAGCTGGGATACG
GGTTTGGGACATGAAGAAAACCAAGAAGGCAGGGGAGACGGTAGA
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Coding sequence (CDS) from alignment at C-linearis_contig10:3579002..3579696+

>mRNA_C-linearis_contig10.671.1 ID=mRNA_C-linearis_contig10.671.1|Name=mRNA_C-linearis_contig10.671.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1386bp|location=Sequence derived from alignment at C-linearis_contig10:3579002..3579696+ (Chordaria linearis ClinC8C monoicous)
GACCTGGAGGGGGCTCAGTACGTGACGGGTAGCATGACCATCGCGAAGGT
TGCGGAGTTGAGGTACGGGCTCGAGGCCGGAGCCAAGGACCTGAGGAACA
TTGCACAACAGGGGCTCAAAGAGACTACCCAGAAGGCGATGGAGGCCGTT
CGTCCGGACGTCGAAAGGCTGTTGGCAGATTTCACCAACCGCTGGGGCGA
CGGCTCCAACATCCTCGAGCACAAGGAGGGCAAGAGGCGCCAACCCCAGG
GTTTTAAGCTGAAGCAGGTGTACGAAACGGCTGTCGACCCGAGGGCCAAG
CACCTCTACGGGATCCTGCCTCGGGAGCACGCAGACGTGTGGCGCGCTGT
CGCTAGCGCCGCGGTGGACATTGCTTTACAGAAGCACGCCAGCGACAAGG
AACCCGCCTCCGCGGAGGCACCTGCTCCCGAGCCCATCCAGACGCCCATT
CAGACGCAGCCGGGCTCACCAGGAGGCCAGGAGGGAGTCCCGAAGCGCCC
TCGCATGAGCCCGTTCGAGGCCGCCGCTGCTGCCCACGCCGAGGCTGCAG
GGGATTGCAGTGTTGGCAATTCTGCGGATGAGAGACGGGAGCAACTGGAG
GCCATCGCGGACATGGAGGTCTCGGCCTTCAAGGCCGCAGCTGGGATACG
GGTTTGGGACATGAAGAAAACCAAGAAGGCAGGGGAGACGGTAGACCTGG
AGGGGGCTCAGTACGTGACGGGTAGCATGACCATCGCGAAGGTTGCGGAG
TTGAGGTACGGGCTCGAGGCCGGAGCCAAGGACCTGAGGAACATTGCACA
ACAGGGGCTCAAAGAGACTACCCAGAAGGCGATGGAGGCCGTTCGTCCGG
ACGTCGAAAGGCTGTTGGCAGATTTCACCAACCGCTGGGGCGACGGCTCC
AACATCCTCGAGCACAAGGAGGGCAAGAGGCGCCAACCCCAGGGTTTTAA
GCTGAAGCAGGTGTACGAAACGGCTGTCGACCCGAGGGCCAAGCACCTCT
ACGGGATCCTGCCTCGGGAGCACGCAGACGTGTGGCGCGCTGTCGCTAGC
GCCGCGGTGGACATTGCTTTACAGAAGCACGCCAGCGACAAGGAACCCGC
CTCCGCGGAGGCACCTGCTCCCGAGCCCATCCAGACGCCCATTCAGACGC
AGCCGGGCTCACCAGGAGGCCAGGAGGGAGTCCCGAAGCGCCCTCGCATG
AGCCCGTTCGAGGCCGCCGCTGCTGCCCACGCCGAGGCTGCAGGGGATTG
CAGTGTTGGCAATTCTGCGGATGAGAGACGGGAGCAACTGGAGGCCATCG
CGGACATGGAGGTCTCGGCCTTCAAGGCCGCAGCTGGGATACGGGTTTGG
GACATGAAGAAAACCAAGAAGGCAGGGGAGACGGTA
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