mRNA_C-linearis_contig10.652.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.652.1 vs. uniprot
Match: A0A6H5KKY7_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY7_9PHAE) HSP 1 Score: 172 bits (435), Expect = 1.220e-42 Identity = 77/87 (88.51%), Postives = 82/87 (94.25%), Query Frame = 3
Query: 3 DDWGEVQVRHSGNFSNGNPLVTQLMGGINFQIEHHLFPSMSHMLYAEIAPIVQKACAEFNIPYNAHPSLWSAYKSYLKHLVVCSEMA 263
DDWGEVQVRHSGNFSNGNP VTQ MGGIN+QIEHHLFPSMSHMLYAEIAPIV+ AC EFNIPYNAHP+LW+AY SYLKHLVVCSEM+
Sbjct: 605 DDWGEVQVRHSGNFSNGNPFVTQAMGGINYQIEHHLFPSMSHMLYAEIAPIVKDACKEFNIPYNAHPTLWTAYASYLKHLVVCSEMS 691
BLAST of mRNA_C-linearis_contig10.652.1 vs. uniprot
Match: D7G102_ECTSI (Fatty acid desaturase, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G102_ECTSI) HSP 1 Score: 125 bits (313), Expect = 2.880e-31 Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 3
Query: 75 MGGINFQIEHHLFPSMSHMLYAEIAPIVQKACAEFNIPYNAHPSLWSAYKSYLKHLVVCSEMA 263
MGGIN+QIEHHLFPSMSHMLYAEIAPIV+ AC EFNIPYNAHP+LWSAY SYLKHLVVCSEM+
Sbjct: 1 MGGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFNIPYNAHPTLWSAYASYLKHLVVCSEMS 63
BLAST of mRNA_C-linearis_contig10.652.1 vs. uniprot
Match: A0A5K0U7T4_9VIRU (Cytochrome b5-like heme/steroid binding domain n=1 Tax=Yasminevirus sp. GU-2018 TaxID=2420051 RepID=A0A5K0U7T4_9VIRU) HSP 1 Score: 103 bits (257), Expect = 5.280e-20 Identity = 47/88 (53.41%), Postives = 63/88 (71.59%), Query Frame = 3
Query: 6 DWGEVQVRHSGNFSNGNPLVTQLMGGINFQIEHHLFPSMSHMLYAEIAPIVQKACAEFNIPYNAHPSLWSAYKSYLKHLVVCSEMAES 269
DWGE+QVR+SGNF+ N + T MGGIN+QIEHHLFPS+ H+ Y I+ IV+K CAEFNIPY + S+ SA L H++ S+ + +
Sbjct: 359 DWGEMQVRNSGNFATSNKVFTYFMGGINYQIEHHLFPSVCHVHYPAISSIVKKTCAEFNIPYVEYDSVVSAVNECLTHMLNVSDTSRA 446
BLAST of mRNA_C-linearis_contig10.652.1 vs. uniprot
Match: A0A835YNM2_9STRA (FA_desaturase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNM2_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 5.120e-19 Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 3
Query: 78 GGINFQIEHHLFPSMSHMLYAEIAPIVQKACAEFNIPYNAHPSLWSAYKSYLKHL 242
GGIN+QIEHHLFPSM HM YA +AP+V+ CAEF IPY+AH +LWSAY SYL+ L
Sbjct: 2 GGINYQIEHHLFPSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSAYASYLRSL 56
BLAST of mRNA_C-linearis_contig10.652.1 vs. uniprot
Match: E0ZJ63_PICSI (Sphingolipid desaturase-like protein (Fragment) n=5 Tax=Picea sitchensis TaxID=3332 RepID=E0ZJ63_PICSI) HSP 1 Score: 92.8 bits (229), Expect = 2.060e-18 Identity = 38/78 (48.72%), Postives = 56/78 (71.79%), Query Frame = 3
Query: 9 WGEVQVRHSGNFSNGNPLVTQLMGGINFQIEHHLFPSMSHMLYAEIAPIVQKACAEFNIPYNAHPSLWSAYKSYLKHL 242
W +QVR + NFS + L T L GG+N+QIEHHLFPS+ H+ Y I IV++ C +F++PY+++PS W+A K++ HL
Sbjct: 73 WAAMQVRTTTNFSTNSMLWTHLSGGLNYQIEHHLFPSVCHLYYPSIHSIVKETCKDFDVPYHSYPSFWTALKAHFLHL 150
BLAST of mRNA_C-linearis_contig10.652.1 vs. uniprot
Match: A0A0V0QTF1_PSEPJ (Cytochrome b5-like heme/steroid binding domain n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QTF1_PSEPJ) HSP 1 Score: 98.2 bits (243), Expect = 2.740e-18 Identity = 46/86 (53.49%), Postives = 62/86 (72.09%), Query Frame = 3
Query: 6 DWGEVQVRHSGNFSNGN--PLVTQLMGGINFQIEHHLFPSMSHMLYAEIAPIVQKACAEFNIPYNAHPSLWSAYKSYLKHLVVCSE 257
DWGE QVR+SGNF N L + GGIN+QIEHHLFPSM ++ +I+PIVQ+ C EFN+PY +H S+ SAYK +LK ++ ++
Sbjct: 351 DWGETQVRNSGNFGNKVFFDLYNHIFGGINYQIEHHLFPSMCNVHLNQISPIVQETCKEFNVPYVSHISVISAYKDFLKGIMKINQ 436
BLAST of mRNA_C-linearis_contig10.652.1 vs. uniprot
Match: UPI0012E13FAB (acyl-CoA desaturase n=1 Tax=Sphingobacterium endophyticum TaxID=2546448 RepID=UPI0012E13FAB) HSP 1 Score: 95.5 bits (236), Expect = 9.210e-18 Identity = 38/76 (50.00%), Postives = 56/76 (73.68%), Query Frame = 3
Query: 3 DDWGEVQVRHSGNFSNGNPLVTQLMGGINFQIEHHLFPSMSHMLYAEIAPIVQKACAEFNIPYNAHPSLWSAYKSY 230
D+W Q++ + NF+ GN +T L+GG+NFQ+EHHLFP +SH+ Y E+ IV+ C EF+IPYN +P+ WSA+ S+
Sbjct: 269 DEWMVHQLQSTSNFATGNKFLTWLLGGLNFQVEHHLFPKISHIHYPELNKIVKSTCREFSIPYNEYPTFWSAFNSH 344
BLAST of mRNA_C-linearis_contig10.652.1 vs. uniprot
Match: A0A5E8CJX7_9ZZZZ (Fatty acid desaturase n=1 Tax=seawater metagenome TaxID=1561972 RepID=A0A5E8CJX7_9ZZZZ) HSP 1 Score: 95.5 bits (236), Expect = 1.980e-17 Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 3
Query: 3 DDWGEVQVRHSGNFSNGN--PLVTQLMGGINFQIEHHLFPSMSHMLYAEIAPIVQKACAEFNIPYNAHPSLWSAYKSYLKHLVVCSEMAES 269
+DWGE QV HS NF + GGIN+QIEHHLFPSM H+ Y EIAPIV+K C EFNI Y H S++ + K +K L++ ++ +S
Sbjct: 333 NDWGEAQVVHSANFETKRFCDYFCYIFGGINYQIEHHLFPSMCHVHYPEIAPIVKKTCQEFNIEYVEHSSVYDSLKDVIKSLIILNKHNKS 423
BLAST of mRNA_C-linearis_contig10.652.1 vs. uniprot
Match: A0A1H6WE92_9BACT (Linoleoyl-CoA desaturase n=2 Tax=Cyclobacterium xiamenense TaxID=1297121 RepID=A0A1H6WE92_9BACT) HSP 1 Score: 94.0 bits (232), Expect = 3.120e-17 Identity = 39/82 (47.56%), Postives = 60/82 (73.17%), Query Frame = 3
Query: 3 DDWGEVQVRHSGNFSNGNPLVTQLMGGINFQIEHHLFPSMSHMLYAEIAPIVQKACAEFNIPYNAHPSLWSAYKSYLKHLVV 248
D+W Q+R + NF+ G L+T +GG+N+Q+EHHLFP +SH+ Y I+ I+++ CAE+NIPY HP L A++S+++HL V
Sbjct: 270 DEWMIHQIRTTANFATGYKLLTWFLGGLNYQVEHHLFPKISHVHYPAISKILRQVCAEYNIPYLEHPKLRWAFRSHVRHLKV 351
BLAST of mRNA_C-linearis_contig10.652.1 vs. uniprot
Match: A0A4Y6Q468_9DELT (Acyl-CoA desaturase n=2 Tax=Persicimonas caeni TaxID=2292766 RepID=A0A4Y6Q468_9DELT) HSP 1 Score: 93.2 bits (230), Expect = 3.990e-17 Identity = 36/79 (45.57%), Postives = 57/79 (72.15%), Query Frame = 3
Query: 6 DWGEVQVRHSGNFSNGNPLVTQLMGGINFQIEHHLFPSMSHMLYAEIAPIVQKACAEFNIPYNAHPSLWSAYKSYLKHL 242
DW Q+ + +F+ NPL+T +GG+N+Q+EHHLFP +SH+ Y ++A IV++ C EF +PY+A P+LW +S+ +HL
Sbjct: 233 DWATHQLMTTVDFAQKNPLITWYVGGLNYQVEHHLFPRISHIHYPKLAEIVRETCEEFGVPYHAQPTLWGGIRSHFRHL 311 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.652.1 >prot_C-linearis_contig10.652.1 ID=prot_C-linearis_contig10.652.1|Name=mRNA_C-linearis_contig10.652.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=66bp MGGINFQIEHHLFPSMSHMLYAEIAPIVQKACAEFNIPYNAHPSLWSAYKback to top mRNA from alignment at C-linearis_contig10:3296480..3299414+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.652.1 ID=mRNA_C-linearis_contig10.652.1|Name=mRNA_C-linearis_contig10.652.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2935bp|location=Sequence derived from alignment at C-linearis_contig10:3296480..3299414+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:3296480..3299414+ >mRNA_C-linearis_contig10.652.1 ID=mRNA_C-linearis_contig10.652.1|Name=mRNA_C-linearis_contig10.652.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at C-linearis_contig10:3296480..3299414+ (Chordaria linearis ClinC8C monoicous)back to top |