mRNA_C-linearis_contig10.649.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.649.1
Unique NamemRNA_C-linearis_contig10.649.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig10.649.1 vs. uniprot
Match: D7FNC9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNC9_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.340e-13
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 3 
Query:   69 MGQKIMRRRPRRESSPLLPKVMAVAKPILQWCIMPAVLLLGMREAARFPTRAEV 230
            MG+KIMRRRPRR+S+PLLPKV+AVAKPI++W IMPAVLL+GMR     PT  EV
Sbjct:    1 MGEKIMRRRPRRKSAPLLPKVLAVAKPIMRWGIMPAVLLMGMRSEPN-PTLLEV 53
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNC9_ECTSI1.340e-1372.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:3281609..3286148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMitochondrial import receptor subunit TOM7
Ec32 orthologEc-22_001240.1
Exons3
Model size966
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.649.1prot_C-linearis_contig10.649.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 3281677..3285619 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927349.888452-UTR-C-linearis_contig10:3281608..32816761622927349.888452-UTR-C-linearis_contig10:3281608..3281676Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3281609..3281676 +
1690879644.749568-UTR-C-linearis_contig10:3281608..32816761690879644.749568-UTR-C-linearis_contig10:3281608..3281676Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3281609..3281676 +
1622927349.9257634-UTR-C-linearis_contig10:3285619..32861481622927349.9257634-UTR-C-linearis_contig10:3285619..3286148Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3285620..3286148 +
1690879644.8054686-UTR-C-linearis_contig10:3285619..32861481690879644.8054686-UTR-C-linearis_contig10:3285619..3286148Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3285620..3286148 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927349.8976274-CDS-C-linearis_contig10:3281676..32817361622927349.8976274-CDS-C-linearis_contig10:3281676..3281736Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3281677..3281736 +
1690879644.7591333-CDS-C-linearis_contig10:3281676..32817361690879644.7591333-CDS-C-linearis_contig10:3281676..3281736Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3281677..3281736 +
1622927349.9062507-CDS-C-linearis_contig10:3284822..32848901622927349.9062507-CDS-C-linearis_contig10:3284822..3284890Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3284823..3284890 +
1690879644.7772133-CDS-C-linearis_contig10:3284822..32848901690879644.7772133-CDS-C-linearis_contig10:3284822..3284890Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3284823..3284890 +
1622927349.9165108-CDS-C-linearis_contig10:3285378..32856191622927349.9165108-CDS-C-linearis_contig10:3285378..3285619Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3285379..3285619 +
1690879644.79594-CDS-C-linearis_contig10:3285378..32856191690879644.79594-CDS-C-linearis_contig10:3285378..3285619Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3285379..3285619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.649.1

>prot_C-linearis_contig10.649.1 ID=prot_C-linearis_contig10.649.1|Name=mRNA_C-linearis_contig10.649.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=123bp
MGQKIMRRRPRRESSPLLPKVMAVAKPILQWCIMPAVLLLGMREAARFPT
RAEVRGLSSPRQGGGRAGESKQVGWMVLREPGTLGPPGLRCCIVTLMQQL
GSVHRHTCPSFLFLSIVVATGI*
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mRNA from alignment at C-linearis_contig10:3281609..3286148+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.649.1 ID=mRNA_C-linearis_contig10.649.1|Name=mRNA_C-linearis_contig10.649.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4540bp|location=Sequence derived from alignment at C-linearis_contig10:3281609..3286148+ (Chordaria linearis ClinC8C monoicous)
CTCGCGCCGCCTCCTCGCGCGACACCATCCGCGCAGCGCACAGCGTGAGG
GCCAGGCTTAGCTTAATCATGGGGCAGAAAATCATGCGGCGGCGACCAAG
AAGGGAATCGTCTCCTCTCTTGCCAAAGGTGAGAGCGTTGGAGCTTTGTT
GTAGCCCACATACTCTGTCTCAGACACACGCAAGTGTTTTCCGCCGCCGC
CTCAGCAAGCGGCCTTCTCGCTCGTCGTTTTTCTCTCGCCGCGTGGCACA
GCACACTGGCTGTGTGCTCGTGAAGCTGACAAACCACGTTGTCCTACGAT
GGTTCTTCTGAGCTTAGTCGTCTGATTTTTGGGTGGCTTTCCCTTCTTTT
TTTGAGAGATGCGAGCTTTTTTGGCAGTGCGTGCTGCTGAGAGAGCGGGC
TCATCGAGTGCACGGTCCTCCGCAGCTTGGGTGTGGTGCTCGGTGCCTGA
TCGTTCGTACCCCTTGTTGTGAAGCTTGCTACTTGCTGATGCTGGATCTC
GTGCTTCGAGCCAAGCAGCTATGCCTCGTGCTTTGAGCCTCGCAGGGAGC
ATTCAAAGTTGGAAATTCACGCCTCGTACCGGGAGATAAGATGTTCGCAC
CGACGCTACCGTTTTGTACGTACATTGCGAATCGCAGTAGTTTCGCTCTG
AAGTACCGACGCTCTCTCTTCGCTCTCGAGGTAGCTTGCCCGTAAGTACT
ACTGTATTTCACCCCCCTAAGCCCCAAAGAGGCCACTTTTCTAGAAACGT
TAGTCTAGCTTTGAAAGAAATCATAAAATCAAAGACGGAACCTCCTCACA
TAAGAGACGGGACTCCATGAGAAAATACAAGCTGGATTGAGCAAGAAGCT
CACTTTAGTTCGTTCGGGTCTAGCTCTGCCGTTTTTACGAGTTTTGGCTT
GAAAATTGGTGGCTGCTCCTACAAGGTTGTAGAGGAGGCGCCGGCACCAG
AATTTTTTCGATCCGAGTTGATTCATGTAAAAAATGATCAATTGGCGGCG
TAGTTGTGAAGTGTCCTACCCTGAAATCGGTATAAACAAAAGGGTCGCGG
ATCGAGCTGAAAATTGGTGTCCACGTGCCTGCTGGGAGCATTACAAGAGG
GTGGATAGTACTTACAAGGCTCAATTCGTCTTCTGCCAAGAGTTCTGGCC
TCGCAAAGGTTCCTATACAATACACAGTATGCTGAGCAAATGTGATAATA
TCTCGATTTCCCACGCGGTTTTAACGAATCAGAACCTGATTTTTTGGCAC
GTGATTTGTACGGCTTTATGATATGTCACAAAAGGCATTCAAAACTGCAC
CCTTTTATTTTTTTTATTTTTTGTGTCACTTTGTTCCCAAACAAATACAT
ACGACTCTGCTCTCGTCGGGCTAACTCATGAAAAAAAAAATCAAAGGGTC
CAATTTTGAAATGTCTTTGTCATAGCCATACTCTCCCTTCTTCCCCTCGC
TGCCTTGCCAAGGCTTTTGCTTAGGCATGGCCCATAGCGAGGGGGGGGGT
CTTTCTAGCGAGCAAGGCTAGACTCACCCTCAGGCTCACCCTCGGGTGGA
CCGATACCTTCTTGCTGCTGCGCACCCGCCGCGAGGCGTGCGCAGCGGTG
GAGTTGGGTCGGCACTGGTGCGTCAGGCACAAAAGTTCAGATGCTAGGCA
GCAATGTCCATCTCATTTTGTGCGCGGAGGCAGACGCCACCAGAAAGGTG
AAGGACACTACGTACACGGCCCTAGGTTTGCTAGAGGGAGCTGTACTGTC
TCGGTAACCTGGCTTCGCGTCGCTAAGTGTGTACCTGCATCGTGGATTCC
TAATCAGTGTCGATGTTTACAATACTCTGTGCCTAACACAGACGTTCGGG
ATAGACTCGGGATATTGTCAATTGATGTGATGGCTTTGGTTGGCTGTTCT
TTTTCACTCTGTTTGTCCGCGGAATGTCATTCTAGCAGCACTTCAGACAG
CAGCTGCGTGCTCCATCCTTGTTCCCACGCCTACCGTGTGTTTTTGTACA
GACAGCACTTCAGACAGCAGTTCCGCTATAGTCGGTAATTCATTGGTAGG
AAGTGGGAGGGGCGATGCTGCTGTAGTCGAATGGAGATTGCGGGCGTGCA
GTTCAGATTTGGACACGCATAACTTGCTGTAGGTATATAAGGTGTACCTC
TTGGGGCTTGTGTACCCTTTCCCTGCTAAAAAGTGTGCGTGTTCTTTAGG
ATTCTCTGATGGCTCTAGTACTTTTGTGACCACGGGCTGTGATCTTGCTA
GATTTTAGGGATTAGCAACTGTAACGAGTTACAAGTGAAGACAACAACAA
CAATACCAAACACGTGCCGAAAAAACAGGTCCTAATTCGTTAAAACCGCG
TGGGAAATCGCAAATTGCCATCAAACCCGGTTTTAGGTCAATCCAGCTTG
TAACGGTATTCCATACAGCAGTGATGTATTATTGGTCCGGCCGAGTACAA
AAACACCTCACATATCAAATGAAATAAGCACCTCCCCTACACAGCTCTGC
CAGGTCAAACAGCAAATATATCGGGGAGAAACCCTCCGTAATGCTGTGGT
GTTTTATTTAATGATATGATAGGAATGCATCGCAACATATGACAAGTAGA
GTCAAAGTGCTGGTTTAGTTTATATGTTATGTTGCTGCTGTGGAAATATT
GTTGTTTCCCTTCGATGGCACTGCTGTAAATATTTTTGCTCCACGATGAG
GCCCGAACTACTGCTGTAGCACGCACTTTGCAGCAGCGGGGGGCAGCAGG
CGCGCTACGCCAACCTTGCCGCCGCTACCCGGATGTTACCACTAGACTTT
CACGGCCCCCCGGGCCTTGTGTACGGATTTCCCGTTTGTATCCACGGAAG
CCCACAAGATTCCAGATACACGGCAACCATCGTATACGGGATACATGCGT
ACTGCTGTAGCGTGCCTCCCAGCGTGCATCTACATACTTCGTATATCGAC
ATCAATTGTCTTCGGTCTTTGCCGAAGTGGCGCATGGATGCTCCGGCAGA
CCTTTGATAGCTTGGTGGCAGCGGTATTCCATAAAAATATTACACATAAA
CTGCCGGTCATCCACAGGCTTTGCTGCACACGGCACATTTCCCCCCCACT
GCTGCGGCCTCATTCTTGCAGCCATCGATCCAAGCTTGACCACGCCCGCC
CACGCTGACCTTTCAAGCCCCGCCTTGTGTGCCGTTGCCGTTCTGTATCC
TCCTCGCCGAGCAGGTTATGGCGGTGGCAAAGCCGATTTTGCAGTGGTGC
ATCATGCCAGCCGTGCTGCTTTTGGGCATGAGGTCGGAGCCCAACCCCAC
CTTGCTGGAAGTTCTGTACCCCCTGTAAAGTCGGTCGAGCTGGTGTACAG
CCTTCGCCCGCAATGGGTACGACAGAGGGAGCGACTGAACTCTTCATGTT
TTTTTCCCTTGTTTGTACAAGCGGAGTTTTGTGTCTGTGTGCGTCGGATT
CAAGTCTACAGAGTATTCTTTTCCGCAAAACCTATAAAATAAATTAGGTT
TAGCTCGCGATTATGGTGGAGAGTGATAGCTGTCGGTGCCCCCCACGTGC
GGGATCAACTTCTTTGCTCTCCTCTCTGCTCCCGCGTGTCTGTAGATCTC
GGGCCTTTTGCGCTATTTTTTGCCACAGACCAAGCGAATAGTGCTGCTGC
TTGCCTATCGAACCGCAGGCGGCACCTTAGCATTACAAAACCGGAAGGTG
CTGGCCCTCTCTTTAAACGACACTCTCTCGCTTTATTTTCCGTATCATGT
GCTGTTCTGCGGCGCTGCAGGGAAGCTGCCAGATTTCCGACGAGGGCGGA
AGTTCGTGGGCTATCAAGTCCGCGGCAGGGCGGTGGGCGCGCGGGGGAGA
GCAAACAGGTTGGATGGATGGTATTACGCGAGCCAGGAACGTTGGGCCCA
CCTGGGTTGAGGTGCTGCATTGTCACACTCATGCAGCAGCTCGGCAGTGT
ACACCGCCACACGTGCCCCTCGTTTCTTTTTTTAAGCATAGTAGTGGCGA
CCGGCATTTGATTTGCTTTAGATGTCGGTGTGTGGCGCAATGGCGCGTTG
GTTCTTGCGCTGTAGTAGACATATTTCCTGCACTACGACGTGCCGAAGCG
AACGCTTTTTCGTTGCAGGGCTTGTGGGGTGCTGTAAGCGAGAGAGGCTT
GGGCGCTTTCCGGCCCTGAAAAATCCGTTCTTGCATGGCACTTGTGTTGT
TTATTTGGTGCACGAACCACGGCACCTCTGCTGTCGGCGGCGTCTGTAGA
GCGCGGGCGGATCACGCAAGCTTCGACGCGAAACACATTTGAGGAGCGAT
TTTTTTTGTATCAAATGAACCCTTCGAAAGTTGCGCTGTCCCGCAAGAGT
CCCAAGGAATACTAATGTTGGTTATCCGTGTCCACCATGTCCTGCCAGCC
ACCGTATTCCTCTCTTCTGGGTGTGTTGGTTGCCCACGCAATGAAGCCGC
CGGCGTAGCAGTGTTGGGAGGTCTCTGTTGCCTATGAAAATGAAAACGAC
CTGGTCGAGGGATGTTTCTCGGCAATGTGGCCAACGTCGG
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Coding sequence (CDS) from alignment at C-linearis_contig10:3281609..3286148+

>mRNA_C-linearis_contig10.649.1 ID=mRNA_C-linearis_contig10.649.1|Name=mRNA_C-linearis_contig10.649.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at C-linearis_contig10:3281609..3286148+ (Chordaria linearis ClinC8C monoicous)
ATGGGGCAGAAAATCATGCGGCGGCGACCAAGAAGGGAATCGTCTCCTCT
CTTGCCAAAGATGGGGCAGAAAATCATGCGGCGGCGACCAAGAAGGGAAT
CGTCTCCTCTCTTGCCAAAGGTTATGGCGGTGGCAAAGCCGATTTTGCAG
TGGTGCATCATGCCAGCCGTGCTGCTTTTGGGCATGAGGTTATGGCGGTG
GCAAAGCCGATTTTGCAGTGGTGCATCATGCCAGCCGTGCTGCTTTTGGG
CATGAGGGAAGCTGCCAGATTTCCGACGAGGGCGGAAGTTCGTGGGCTAT
CAAGTCCGCGGCAGGGCGGTGGGCGCGCGGGGGAGAGCAAACAGGTTGGA
TGGATGGTATTACGCGAGCCAGGAACGTTGGGCCCACCTGGGTTGAGGTG
CTGCATTGTCACACTCATGCAGCAGCTCGGCAGTGTACACCGCCACACGT
GCCCCTCGTTTCTTTTTTTAAGCATAGTAGTGGCGACCGGCATTTGAGGA
AGCTGCCAGATTTCCGACGAGGGCGGAAGTTCGTGGGCTATCAAGTCCGC
GGCAGGGCGGTGGGCGCGCGGGGGAGAGCAAACAGGTTGGATGGATGGTA
TTACGCGAGCCAGGAACGTTGGGCCCACCTGGGTTGAGGTGCTGCATTGT
CACACTCATGCAGCAGCTCGGCAGTGTACACCGCCACACGTGCCCCTCGT
TTCTTTTTTTAAGCATAGTAGTGGCGACCGGCATTTGA
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