mRNA_C-linearis_contig10.647.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.647.1
Unique NamemRNA_C-linearis_contig10.647.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig10.647.1 vs. uniprot
Match: A0A6H5KN53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN53_9PHAE)

HSP 1 Score: 317 bits (812), Expect = 2.130e-98
Identity = 188/345 (54.49%), Postives = 209/345 (60.58%), Query Frame = 1 
Query:  250 DDLVHRNLTWRWPEFCSAAPTRAPPSSPPVRPPSPSRGYGXXXXXXXXSGSAFDCERRRIPAASGKGGNGRCLAAPRASGTGSPLP--KLPKGSYLRHRGTT--VLTVQENLHLVLERLAEAVREQLHSVCSKPAAEEMLRGPKGGEPPERYYGASTRK----------------------------------DFRDYFDAEEEEAARRQQPKSYAHLGALREGSKAKYVFDRTSHTRKGSLAAHLRGDYQPQAEGYRGTNVHAATDWRRLNTSLDRYASSGRDAMTRIADSDRELRKQGVWVRQQTKAREQRRQRANHLLEVYRSELLKEQLREIEVLHLSPRE 1170
            D+ +  +LTWRWP  CS   TR                                                         GT   L   K PKGSYLR RGTT  VL VQENLHL LERLAEA++ Q+HSV S+  AEE+LRGP GGEPPERY GAS RK                                  DFR++FD EEE  AR+QQPK+YAHLG LRE  KAKYVFDRTSHTRKGSLAAHLRGDY+P  +GYRGTNVH+  DWRR NT+LDRYA +GR+AM R+A SDR+LR QGVWVRQ TKAREQRRQRANHLLEVYRSELLKEQLREIE LHL+P E
Sbjct:  183 DERLKESLTWRWPSMCSTVDTR---------------------------------------------------------GTNDDLSPQKPPKGSYLRQRGTTLQVLVVQENLHLALERLAEAIQVQVHSVSSRTFAEEILRGPPGGEPPERYCGASMRKGCEVIGLASTACMTMSTAPPPTGVTRTSPTLVMQDFREFFDNEEELVARQQQPKAYAHLGGLREDGKAKYVFDRTSHTRKGSLAAHLRGDYEPHPKGYRGTNVHSVADWRRPNTTLDRYAITGREAMERVAKSDRQLRNQGVWVRQHTKAREQRRQRANHLLEVYRSELLKEQLREIEALHLAPGE 470
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BLAST of mRNA_C-linearis_contig10.647.1 vs. uniprot
Match: D7FND0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FND0_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 3.140e-72
Identity = 135/195 (69.23%), Postives = 154/195 (78.97%), Query Frame = 1 
Query:  589 RLAEAVREQLHSVCSKPAAEEMLRGPKGGEPPE-RYYGASTRKDFRDYFDAEEEEAARRQQPKSYAHLGALREGSKAKYVFDRTSHTRKGSLAAHLRGDYQPQAEGYRGTNVHAATDWRRLNTSLDRYASSGRDAMTRIADSDRELRKQGVWVRQQTKAREQRRQRANHLLEVYRSELLKEQLREIEVLHLSPRE 1170
            RL E++  +  S+CS   A          +PP+  Y       DFRD+FD+EEE AAR+QQPK+YAHLG LRE  KAKYVFDRTSHTRKGSLAAHLRGDY+P+ +GYRGTNVH+  DWRRLNT+LDRYA +GR+AM R+A SDRELR QGVWVRQ TKAREQRRQRANHLLEVYRSELLKEQLREIE LHL+P E
Sbjct:  163 RLKESLTWRWPSMCSTADARGANDDLSPQKPPKGSYLRQRGPTDFRDFFDSEEEMAARQQQPKAYAHLGGLREEGKAKYVFDRTSHTRKGSLAAHLRGDYEPRPKGYRGTNVHSVADWRRLNTTLDRYAITGREAMERVAKSDRELRSQGVWVRQHTKAREQRRQRANHLLEVYRSELLKEQLREIEALHLAPGE 357
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KN53_9PHAE2.130e-9854.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FND0_ECTSI3.140e-7269.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:3274893..3278074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_001250.1
Exons7
Model size1175
Cds size1173
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927324.9457538-CDS-C-linearis_contig10:3274894..32749661622927324.9457538-CDS-C-linearis_contig10:3274894..3274966Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3274895..3274966 -
1690879627.2180188-CDS-C-linearis_contig10:3274894..32749661690879627.2180188-CDS-C-linearis_contig10:3274894..3274966Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3274895..3274966 -
1622927324.958621-CDS-C-linearis_contig10:3275337..32754731622927324.958621-CDS-C-linearis_contig10:3275337..3275473Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3275338..3275473 -
1690879627.2285829-CDS-C-linearis_contig10:3275337..32754731690879627.2285829-CDS-C-linearis_contig10:3275337..3275473Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3275338..3275473 -
1622927324.9704263-CDS-C-linearis_contig10:3275730..32758201622927324.9704263-CDS-C-linearis_contig10:3275730..3275820Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3275731..3275820 -
1690879627.2385097-CDS-C-linearis_contig10:3275730..32758201690879627.2385097-CDS-C-linearis_contig10:3275730..3275820Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3275731..3275820 -
1622927324.9799397-CDS-C-linearis_contig10:3276099..32762601622927324.9799397-CDS-C-linearis_contig10:3276099..3276260Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3276100..3276260 -
1690879627.2483068-CDS-C-linearis_contig10:3276099..32762601690879627.2483068-CDS-C-linearis_contig10:3276099..3276260Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3276100..3276260 -
1622927324.9935403-CDS-C-linearis_contig10:3276638..32768031622927324.9935403-CDS-C-linearis_contig10:3276638..3276803Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3276639..3276803 -
1690879627.2650523-CDS-C-linearis_contig10:3276638..32768031690879627.2650523-CDS-C-linearis_contig10:3276638..3276803Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3276639..3276803 -
1622927325.0041611-CDS-C-linearis_contig10:3276965..32772331622927325.0041611-CDS-C-linearis_contig10:3276965..3277233Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3276966..3277233 -
1690879627.2731247-CDS-C-linearis_contig10:3276965..32772331690879627.2731247-CDS-C-linearis_contig10:3276965..3277233Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3276966..3277233 -
1622927325.0139134-CDS-C-linearis_contig10:3277793..32780741622927325.0139134-CDS-C-linearis_contig10:3277793..3278074Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3277794..3278074 -
1690879627.2808027-CDS-C-linearis_contig10:3277793..32780741690879627.2808027-CDS-C-linearis_contig10:3277793..3278074Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3277794..3278074 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.647.1prot_C-linearis_contig10.647.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 3274895..3278074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.647.1

>prot_C-linearis_contig10.647.1 ID=prot_C-linearis_contig10.647.1|Name=mRNA_C-linearis_contig10.647.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=391bp
IPGRIAGSTAARADSESSGKHANHIHPKNARFSEFATVSGGDSTERLAGD
ENGTDHGAVGTQETRYVVSEDCAGAAAKLRDDDDDLVHRNLTWRWPEFCS
AAPTRAPPSSPPVRPPSPSRGYGGGDDDDDDSGSAFDCERRRIPAASGKG
GNGRCLAAPRASGTGSPLPKLPKGSYLRHRGTTVLTVQENLHLVLERLAE
AVREQLHSVCSKPAAEEMLRGPKGGEPPERYYGASTRKDFRDYFDAEEEE
AARRQQPKSYAHLGALREGSKAKYVFDRTSHTRKGSLAAHLRGDYQPQAE
GYRGTNVHAATDWRRLNTSLDRYASSGRDAMTRIADSDRELRKQGVWVRQ
QTKAREQRRQRANHLLEVYRSELLKEQLREIEVLHLSPRER
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mRNA from alignment at C-linearis_contig10:3274893..3278074-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.647.1 ID=mRNA_C-linearis_contig10.647.1|Name=mRNA_C-linearis_contig10.647.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3182bp|location=Sequence derived from alignment at C-linearis_contig10:3274893..3278074- (Chordaria linearis ClinC8C monoicous)
ATCCCGGGGAGAATCGCCGGGAGCACCGCTGCGCGTGCCGACTCCGAAAG
CAGCGGGAAGCATGCGAACCACATCCACCCGAAAAATGCACGCTTCTCCG
AGTTCGCAACCGTCTCCGGTGGGGACAGCACTGAACGCCTCGCGGGCGAT
GAAAACGGGACCGATCACGGTGCTGTCGGCACTCAGGAGACGCGTTATGT
GGTTTCCGAAGACTGCGCCGGGGCAGCGGCCAAGCTCCGAGATGATGATG
ATGATCTGGTTCACCGGAACCTGACATGGAGGTATTGTTTTTGCCTTACG
TGTGGCTGAGGTGGTAGTGGTAGCTGCCGGTTGTACACGTTTCGGCCGCT
AGGATAGATGAGGACTTTGTCGCGAAACCGCGAAGCATCTTGATGACACT
TACGTCCTTCGAAGAATTTAGAGAGCTGCCTACGCTTACCCGTTAGTTCT
CCTTCATGGTGTCCTTCGCAGCGATGCCTGTGCGGTCGATTGAGATGGTG
TGTTGTGCCCCGGAAATGCTGGCCGTCATGACAAACACCTCCCACGATGT
TTCTCCTTAGGGTTGTCGAGACCGCGCTCGGAGCTCGGTAAAGGTCCACA
AGGCCGTACACTCGCTGCCCGTGTCTACACCGAAAATCAACGGTTCGGGC
GTCTTGGCTCCATCTTTCCACCGGTGTGCTGACCATCGTTTTTTCACGGC
CAACGTGCCAACCGTTCCAGTGCCTGGACTAGCACTTCTGGGGGAAGCCT
TCGATCGCAGCTAACCGCCCGCCCGCATCCGACTACCTGCCTGCCTGCCT
GCCTTCTTCGCTGATCCCCTCCCTTCTCTGCCGTTTCAAAGATGGCCGGA
GTTCTGCTCAGCGGCTCCCACACGAGCACCGCCGTCGTCTCCTCCGGTGC
GGCCTCCTTCGCCGTCCCGCGGGTATGGTGGCGGTGACGATGATGATGAT
GATAGCGGAAGCGCTTTCGATTGTGAGAGGCGACGAATCCCTGCTGCATC
GGGAAAGGGCGGAAATGGAAGATGCCTTGCAGCGCCAAGAGCGTCTGGCA
CGGGAAGTCCGCTGCCGAAGCTGCCCAAGGGGAGCTACCTCCGGCACCGC
GGAACCACGGTGAGAGGGACAGCCACCGTGCGCTATAGCTGCAAAGAGCG
TCGATAACATTGTGCTGGTAAATTGAAATCCACCCCGATCGACCGGGCAA
AGAACAAAAATCAACATCATCAACAACAACAACAACAACAACAACAACAA
CAGTAACAACAATCACGACAGGTGTTGACCGTTCAAGAGAATCTACACCT
AGTCCTCGAGCGGCTGGCTGAGGCTGTCCGGGAGCAGTTGCACTCCGTCT
GTTCAAAGCCGGCCGCAGAGGAAATGTTGAGGGGTCCTAAGGGAGGAGAA
CCGCCGGAGCGGTACTACGGAGCTTCTACGCGAAAGGTAGAGCGTGACTC
GGGTTGTTCAAATGGTGTTGACAAGAGCACTACGGGAACAGTACTCGTCG
CTATATAAATACGACGATGGTGACAGCACACGGTGCAGACTAGATGAAAG
CATTTTTATCACAACGGCAACGAAAATATGAAAGAAGGGGAAGCGCGACG
AAGGCTCGGAAGAAGTTTTTTTAAGAACAGGAAACTGACTGAGGCTGGCA
GAAAATAATGGCTCAACCCCAACACCCAGCAAGCCCCATCAAAGCATCGA
ACCGGTTTTCTCCTCGACGGTAGAGCTTCCGCCCTTGTCGCCTTGGAAGC
CTCCGCCGCTTTGCTGTCTGTCCAACGGGGGTGTTCCTTACACGACCCCC
TTCCCATTCCTCAGGACTTTCGCGACTACTTCGACGCCGAAGAGGAAGAG
GCGGCCCGCCGGCAGCAGCCCAAATCCTACGCTCACCTTGGGGCGCTGCG
CGAGGGCAGCAAAGCGAAGTACGTGTTCGACCGCACCAGCCACACTCGGA
AGGGGTCCCTGGCCGCCCATCTGCGGTGAGGAAGTTGCGCAGTATGTCCG
TCGTTTGATGCCTGGCGTTTGGGACTGTTGTGGCGAGAGACTTTTCGAAC
CGCTTGCTCTGAGACGCTGTGTGAACCAGGGAACGGCCGCGACTTGTTAG
TCCTTCCTGTGCGGCAGCCAGGATTGCCGCCAGTTGCTTGATATACCTCC
AACTTCTAACACCACGCACTACGAGCAGAATGATGTACACGAGAGTATAG
ATGAGCTCACGACAGGCAGCGTTCTCCTGTTTGCTTTTAACCATGTCTGT
CCAGGGGAGACTACCAGCCTCAAGCTGAAGGGTATCGAGGTACCAACGTC
CATGCCGCCACAGACTGGAGGCGACTTAACACATCCCTGGACAGGTGAGG
ATGTGCCCCCCCCTCCCAAAACCTGTTTCCGGCGCTCGCAGCGCCCCCCG
ATGGAAGGTGACCACAACCCATGAGTGGCAGCTAATCTTTGGCGAAATCT
ATTTTGAAATATAAGGAATCAAAGATGGTTTCGTCCGTCTCGAAAGGACT
GCTGTGTGCTCAACGACGACAAAAGTGTTTGACGGCGCCCCCCTTCCATG
TTCCCCGTCCTACTTATCATCGTCATGATGCCCCTTCTCTTCACCCCTCA
GGTACGCCTCCTCGGGAAGGGACGCGATGACGAGGATAGCTGACTCCGAC
AGGGAGCTCAGGAAGCAAGGGGTCTGGGTTCGGCAGCAGACGAAAGCGAG
AGAGCAGCGACGACAACGGGCCAACCACCTGCTGGAGGTGAGACACTCTC
CCGCCCCCGCAACCGGCAAGCATATCTCCTGCTGTGCTTACGTTTCGCCG
CGTGCGCCGTTACGGCAGCCAATATAGGCTATGGCCCTGGTTCAACAGCC
GAAAAACAACTACCGGTACTGTTTCCCCCCAGGATGAGGCCATTTGAGTG
AAAAGTGTAGCGTCCTCTTTCTCCGCTTTGACGGGCGATTTTGGGTTTTA
AGGTTGGGGTCCCCGTGCGCACCCGGGCCTAGATTCACACCCGCTCAAAG
CTGTTTTCGCGTATATGGGGAAATACAGAACGGCACTCAGGCAACCATCG
AACGGAACGCGCTAAACAAATCCACCGGCGGTTCAATCAGTTTCTTTCCC
CCCCGTAGGTGTACAGATCCGAGCTGCTAAAGGAGCAGTTGCGGGAGATA
GAGGTGCTACACCTCTCGCCTAGAGAACGACG
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Coding sequence (CDS) from alignment at C-linearis_contig10:3274893..3278074-

>mRNA_C-linearis_contig10.647.1 ID=mRNA_C-linearis_contig10.647.1|Name=mRNA_C-linearis_contig10.647.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2346bp|location=Sequence derived from alignment at C-linearis_contig10:3274893..3278074- (Chordaria linearis ClinC8C monoicous)
ATCCCGGGGAGAATCGCCGGGAGCACCGCTGCGCGTGCCGACTCCGAAAG
CAGCGGGAAGCATGCGAACCACATCCACCCGAAAAATGCACGCTTCTCCG
AGTTCGCAACCGTCTCCGGTGGGGACAGCACTGAACGCCTCGCGGGCGAT
GAAAACGGGACCGATCACGGTGCTGTCGGCACTCAGGAGACGCGTTATGT
GGTTTCCGAAGACTGCGCCGGGGCAGCGGCCAAGCTCCGAGATGATGATG
ATGATCTGGTTCACCGGAACCTGACATGGAGATCCCGGGGAGAATCGCCG
GGAGCACCGCTGCGCGTGCCGACTCCGAAAGCAGCGGGAAGCATGCGAAC
CACATCCACCCGAAAAATGCACGCTTCTCCGAGTTCGCAACCGTCTCCGG
TGGGGACAGCACTGAACGCCTCGCGGGCGATGAAAACGGGACCGATCACG
GTGCTGTCGGCACTCAGGAGACGCGTTATGTGGTTTCCGAAGACTGCGCC
GGGGCAGCGGCCAAGCTCCGAGATGATGATGATGATCTGGTTCACCGGAA
CCTGACATGGAGATGGCCGGAGTTCTGCTCAGCGGCTCCCACACGAGCAC
CGCCGTCGTCTCCTCCGGTGCGGCCTCCTTCGCCGTCCCGCGGGTATGGT
GGCGGTGACGATGATGATGATGATAGCGGAAGCGCTTTCGATTGTGAGAG
GCGACGAATCCCTGCTGCATCGGGAAAGGGCGGAAATGGAAGATGCCTTG
CAGCGCCAAGAGCGTCTGGCACGGGAAGTCCGCTGCCGAAGCTGCCCAAG
GGGAGCTACCTCCGGCACCGCGGAACCACGATGGCCGGAGTTCTGCTCAG
CGGCTCCCACACGAGCACCGCCGTCGTCTCCTCCGGTGCGGCCTCCTTCG
CCGTCCCGCGGGTATGGTGGCGGTGACGATGATGATGATGATAGCGGAAG
CGCTTTCGATTGTGAGAGGCGACGAATCCCTGCTGCATCGGGAAAGGGCG
GAAATGGAAGATGCCTTGCAGCGCCAAGAGCGTCTGGCACGGGAAGTCCG
CTGCCGAAGCTGCCCAAGGGGAGCTACCTCCGGCACCGCGGAACCACGGT
GTTGACCGTTCAAGAGAATCTACACCTAGTCCTCGAGCGGCTGGCTGAGG
CTGTCCGGGAGCAGTTGCACTCCGTCTGTTCAAAGCCGGCCGCAGAGGAA
ATGTTGAGGGGTCCTAAGGGAGGAGAACCGCCGGAGCGGTACTACGGAGC
TTCTACGCGAAAGGTGTTGACCGTTCAAGAGAATCTACACCTAGTCCTCG
AGCGGCTGGCTGAGGCTGTCCGGGAGCAGTTGCACTCCGTCTGTTCAAAG
CCGGCCGCAGAGGAAATGTTGAGGGGTCCTAAGGGAGGAGAACCGCCGGA
GCGGTACTACGGAGCTTCTACGCGAAAGGACTTTCGCGACTACTTCGACG
CCGAAGAGGAAGAGGCGGCCCGCCGGCAGCAGCCCAAATCCTACGCTCAC
CTTGGGGCGCTGCGCGAGGGCAGCAAAGCGAAGTACGTGTTCGACCGCAC
CAGCCACACTCGGAAGGGGTCCCTGGCCGCCCATCTGCGGACTTTCGCGA
CTACTTCGACGCCGAAGAGGAAGAGGCGGCCCGCCGGCAGCAGCCCAAAT
CCTACGCTCACCTTGGGGCGCTGCGCGAGGGCAGCAAAGCGAAGTACGTG
TTCGACCGCACCAGCCACACTCGGAAGGGGTCCCTGGCCGCCCATCTGCG
GGGAGACTACCAGCCTCAAGCTGAAGGGTATCGAGGTACCAACGTCCATG
CCGCCACAGACTGGAGGCGACTTAACACATCCCTGGACAGGGGAGACTAC
CAGCCTCAAGCTGAAGGGTATCGAGGTACCAACGTCCATGCCGCCACAGA
CTGGAGGCGACTTAACACATCCCTGGACAGGTACGCCTCCTCGGGAAGGG
ACGCGATGACGAGGATAGCTGACTCCGACAGGGAGCTCAGGAAGCAAGGG
GTCTGGGTTCGGCAGCAGACGAAAGCGAGAGAGCAGCGACGACAACGGGC
CAACCACCTGCTGGAGGTACGCCTCCTCGGGAAGGGACGCGATGACGAGG
ATAGCTGACTCCGACAGGGAGCTCAGGAAGCAAGGGGTCTGGGTTCGGCA
GCAGACGAAAGCGAGAGAGCAGCGACGACAACGGGCCAACCACCTGCTGG
AGGTGTACAGATCCGAGCTGCTAAAGGAGCAGTTGCGGGAGATAGAGGTG
CTACACCTCTCGCCTAGAGAACGAGTGTACAGATCCGAGCTGCTAAAGGA
GCAGTTGCGGGAGATAGAGGTGCTACACCTCTCGCCTAGAGAACGA
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