mRNA_C-linearis_contig10.636.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.636.1
Unique NamemRNA_C-linearis_contig10.636.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:3118566..3119925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size608
Cds size606
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927324.5439806-CDS-C-linearis_contig10:3118565..31186211622927324.5439806-CDS-C-linearis_contig10:3118565..3118621Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3118566..3118621 +
1690879626.929955-CDS-C-linearis_contig10:3118565..31186211690879626.929955-CDS-C-linearis_contig10:3118565..3118621Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3118566..3118621 +
1622927324.5532856-CDS-C-linearis_contig10:3119375..31199251622927324.5532856-CDS-C-linearis_contig10:3119375..3119925Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3119376..3119925 +
1690879626.9382992-CDS-C-linearis_contig10:3119375..31199251690879626.9382992-CDS-C-linearis_contig10:3119375..3119925Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3119376..3119925 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.636.1prot_C-linearis_contig10.636.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 3118566..3119925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.636.1

>prot_C-linearis_contig10.636.1 ID=prot_C-linearis_contig10.636.1|Name=mRNA_C-linearis_contig10.636.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=202bp
VLHPPSRWRVRRCSTPSLRRHNVSEMKETLIAAANEEEKAAAAPAHGGGG
TRGRHGVEPQEKEMEAVDADADADADAVSEQLDKAGPAAHGDNPRHHQQE
GSSPSLVPTSLPPASSGGGRRSGGSRVSLAGVSLSGLHVHLDMPPPLPLP
PLLPPAHLSAGSGASPRPGSVQRLLEEEGPDARNVVSWLVPNHNNAGSAG
GG
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mRNA from alignment at C-linearis_contig10:3118566..3119925+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.636.1 ID=mRNA_C-linearis_contig10.636.1|Name=mRNA_C-linearis_contig10.636.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1360bp|location=Sequence derived from alignment at C-linearis_contig10:3118566..3119925+ (Chordaria linearis ClinC8C monoicous)
GTCCTGCATCCTCCTTCTCGATGGCGAGTTCGAAGATGCTCAACGCCTAG
CCTGAGGTATGGTTTCCTGAACGTGTCACTCGTGGGTCTACAGAAGGCAA
GAGCGAAGTAGTTTTGATTTCCAGTCATGATGCCGGAAGCAGTGATGGTC
GTTGATCAGGCGGAGCAACCCACCGCACAAACATCAAAGATATACACACG
GCCCACACCGTACCGTCGCGGTTTCAAAAGCCGTCAGAAGCGAACCCCAC
AACAAAATAGGAGCGTTGGGCAAAACCCGGGAGAGAAGAAGAGAGAAAGC
TGGAGTGGATTCCCCAGCCGATATGATTTGCACTTTGAAAAGCGGTAAAT
CGGTCGTCCCGATCCTTTTCAAAACCCCGGCAAATGGTACCTGCACCACC
AGCACCCGCCCAGAGCAGGTTATCCAGTTCTCTAGTACAGCATGTGCTTT
TTTTCATTTCAGCTACATTTTCGAGCGTCAGCCTTCGAAACGAGCGCAGC
AAAAAGTGTAGCGCAGGCGGTTCGCGTCAAGGGTCATATCGTGTGCCTCC
ACAGCAGTTAGTGTTGGACCACAAACCGTGAACGGATTGATTCCCTGTAA
TGCATGCACACCGCCTTTCTTGCGCTTTTGAGGTAGATGGGTGGGTCACA
CACGGTCGCGACTACAGAGAGGCATCATAGACCAAAGGATGCCTGCGTTA
GCGAGGTGCCTGTTTTCCCGTACGCCTCCAGGCCCAACGCCCCCTGTCCA
TCCTCATAATTGTCACCACCACTACCCCGGCTCATCATGCGAAACACCGG
CTTGTTACAGGAGGCACAACGTTTCCGAGATGAAAGAAACACTGATAGCG
GCAGCGAACGAGGAGGAAAAAGCTGCCGCCGCCCCGGCCCACGGCGGCGG
TGGCACTCGGGGGCGACACGGCGTGGAACCCCAGGAAAAGGAAATGGAAG
CAGTAGACGCAGACGCAGACGCAGACGCAGACGCAGTGTCAGAACAATTA
GATAAGGCGGGGCCGGCGGCCCACGGGGACAACCCGCGCCACCACCAGCA
GGAGGGCTCGTCGCCATCGTTGGTGCCGACGAGCTTGCCACCAGCGAGCA
GCGGTGGTGGTCGTCGTAGCGGCGGCAGCAGAGTCAGTCTTGCCGGTGTG
AGCCTTAGCGGTCTGCATGTCCACCTCGACATGCCGCCGCCGCTGCCGCT
TCCGCCACTCCTGCCGCCGGCGCACCTGTCCGCCGGCTCCGGCGCCTCGC
CTCGACCGGGCTCGGTCCAACGCTTGCTGGAGGAGGAGGGACCCGACGCT
CGAAACGTCGTCAGCTGGCTCGTTCCTAACCACAATAACGCCGGCAGCGC
TGGCGGCGGA
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Coding sequence (CDS) from alignment at C-linearis_contig10:3118566..3119925+

>mRNA_C-linearis_contig10.636.1 ID=mRNA_C-linearis_contig10.636.1|Name=mRNA_C-linearis_contig10.636.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at C-linearis_contig10:3118566..3119925+ (Chordaria linearis ClinC8C monoicous)
GTCCTGCATCCTCCTTCTCGATGGCGAGTTCGAAGATGCTCAACGCCTAG
CCTGAGGTCCTGCATCCTCCTTCTCGATGGCGAGTTCGAAGATGCTCAAC
GCCTAGCCTGAGGAGGCACAACGTTTCCGAGATGAAAGAAACACTGATAG
CGGCAGCGAACGAGGAGGAAAAAGCTGCCGCCGCCCCGGCCCACGGCGGC
GGTGGCACTCGGGGGCGACACGGCGTGGAACCCCAGGAAAAGGAAATGGA
AGCAGTAGACGCAGACGCAGACGCAGACGCAGACGCAGTGTCAGAACAAT
TAGATAAGGCGGGGCCGGCGGCCCACGGGGACAACCCGCGCCACCACCAG
CAGGAGGGCTCGTCGCCATCGTTGGTGCCGACGAGCTTGCCACCAGCGAG
CAGCGGTGGTGGTCGTCGTAGCGGCGGCAGCAGAGTCAGTCTTGCCGGTG
TGAGCCTTAGCGGTCTGCATGTCCACCTCGACATGCCGCCGCCGCTGCCG
CTTCCGCCACTCCTGCCGCCGGCGCACCTGTCCGCCGGCTCCGGCGCCTC
GCCTCGACCGGGCTCGGTCCAACGCTTGCTGGAGGAGGAGGGACCCGACG
CTCGAAACGTCGTCAGCTGGCTCGTTCCTAACCACAATAACGCCGGCAGC
GCTGGCGGCGGAGAGGCACAACGTTTCCGAGATGAAAGAAACACTGATAG
CGGCAGCGAACGAGGAGGAAAAAGCTGCCGCCGCCCCGGCCCACGGCGGC
GGTGGCACTCGGGGGCGACACGGCGTGGAACCCCAGGAAAAGGAAATGGA
AGCAGTAGACGCAGACGCAGACGCAGACGCAGACGCAGTGTCAGAACAAT
TAGATAAGGCGGGGCCGGCGGCCCACGGGGACAACCCGCGCCACCACCAG
CAGGAGGGCTCGTCGCCATCGTTGGTGCCGACGAGCTTGCCACCAGCGAG
CAGCGGTGGTGGTCGTCGTAGCGGCGGCAGCAGAGTCAGTCTTGCCGGTG
TGAGCCTTAGCGGTCTGCATGTCCACCTCGACATGCCGCCGCCGCTGCCG
CTTCCGCCACTCCTGCCGCCGGCGCACCTGTCCGCCGGCTCCGGCGCCTC
GCCTCGACCGGGCTCGGTCCAACGCTTGCTGGAGGAGGAGGGACCCGACG
CTCGAAACGTCGTCAGCTGGCTCGTTCCTAACCACAATAACGCCGGCAGC
GCTGGCGGCGGA
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