mRNA_C-linearis_contig10.632.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.632.1
Unique NamemRNA_C-linearis_contig10.632.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig10.632.1 vs. uniprot
Match: A0A6H5JST9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JST9_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.360e-6
Identity = 34/50 (68.00%), Postives = 36/50 (72.00%), Query Frame = 2 
Query:  443 AIADLSAKTKAHPAHKRTAAAGKTALRGNVNMTAAERGSDKSTNEAKGDG 592
            A ADL  +T AHPAH+RT A GKT  R NVN TA ERGS KSTNE K DG
Sbjct:  294 ATADLRPETIAHPAHQRTVAKGKTPSRSNVNKTAEERGSTKSTNEGKADG 343
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BLAST of mRNA_C-linearis_contig10.632.1 vs. uniprot
Match: A0A6H5JKJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKJ3_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 6.910e-6
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 2 
Query:  473 AHPAHKRTAAAGKTALRGNVNMTAAERGSDKSTNEAKGD 589
            AHPAHKRTAAAGKT LR NVN TAAERGS +ST E K D
Sbjct:  234 AHPAHKRTAAAGKTPLRNNVNKTAAERGSSRSTKEGKAD 272
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JST9_9PHAE2.360e-668.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKJ3_9PHAE6.910e-679.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:3047864..3048945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size698
Cds size516
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.632.1prot_C-linearis_contig10.632.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 3048045..3048945 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927324.4913-UTR-C-linearis_contig10:3047863..30480441622927324.4913-UTR-C-linearis_contig10:3047863..3048044Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3047864..3048044 +
1690879626.8978887-UTR-C-linearis_contig10:3047863..30480441690879626.8978887-UTR-C-linearis_contig10:3047863..3048044Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3047864..3048044 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927324.5016077-CDS-C-linearis_contig10:3048044..30484561622927324.5016077-CDS-C-linearis_contig10:3048044..3048456Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3048045..3048456 +
1690879626.9084225-CDS-C-linearis_contig10:3048044..30484561690879626.9084225-CDS-C-linearis_contig10:3048044..3048456Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3048045..3048456 +
1622927324.512116-CDS-C-linearis_contig10:3048841..30489451622927324.512116-CDS-C-linearis_contig10:3048841..3048945Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3048842..3048945 +
1690879626.9196382-CDS-C-linearis_contig10:3048841..30489451690879626.9196382-CDS-C-linearis_contig10:3048841..3048945Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3048842..3048945 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.632.1

>prot_C-linearis_contig10.632.1 ID=prot_C-linearis_contig10.632.1|Name=mRNA_C-linearis_contig10.632.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=172bp
MCRCLSVVVAAGVLLLISGCSSFRGLLLPRCLLRLDASMQPQSIIISFCP
ADTSVVLMPPLSLSHAVAAAAAAATPLHPDAPTLALPAIADLSAKTKAHP
AHKRTAAAGKTALRGNVNMTAAERGSDKSTNEAKGDGARTATVNGAKVTV
PEAVWQGSQAPTADQSAAMLQR
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mRNA from alignment at C-linearis_contig10:3047864..3048945+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.632.1 ID=mRNA_C-linearis_contig10.632.1|Name=mRNA_C-linearis_contig10.632.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1082bp|location=Sequence derived from alignment at C-linearis_contig10:3047864..3048945+ (Chordaria linearis ClinC8C monoicous)
ATGGGCTTGCTTGAGCGGCGCAAAGGGTTTGTCGTGGCCGAGTGGCCTCC
ACTGCGATAGGATTAGCATTGCTTTGTGTCGGCGCCAAATCGTTGCTTTC
CGTCGCCATCCAGCCCAAAAGCCCCGCCCCCCTCTGGCCCGACGTTGAAA
TTTGGCAGCGAGAGCTCGAAACGTTAGGTAGATGTGCCGGTGTCTTAGCG
TTGTTGTTGCTGCTGGCGTCCTTTTATTGATTTCGGGTTGTTCTAGTTTC
CGGGGTTTGCTACTTCCTCGATGTCTTCTTCGATTGGATGCATCAATGCA
ACCGCAGTCGATCATCATATCGTTTTGCCCGGCTGACACTTCCGTCGTCT
TGATGCCACCGCTGTCGCTGTCGCATGCTGTCGCTGCTGCTGCTGCTGCT
GCTACCCCTCTCCACCCTGACGCGCCCACCCTTGCCCTGCCAGCCATTGC
CGACCTGAGCGCAAAGACGAAGGCCCACCCGGCCCACAAGCGCACGGCTG
CCGCGGGCAAGACCGCGTTGCGGGGCAACGTCAACATGACCGCGGCCGAG
CGGGGCTCGGACAAGTCAACAAACGAGGCCAAGGGCGACGGCGGTGAGGT
GGTGTGATGTTGCCCGCAATGTCTGTTGTTGTTATTGTTGTTGTTGTCGT
TTCGTCGTCGTTGTTGTTGTGGAGTAAACGGCCTTCTTTAATACCGATCT
GGGGTGGCTCCTGCGATGCCGTTGTGCTGTGTTGGCGCCGGTCGTTTGCT
TCACGTCGCCATCCAGCCCAAAAGCCTAGCCCCCCTCCGCCCCGACGTTG
AAGGTTAGCAGAGAGCGCTCGCGACGTGGTTCCAAGCAGGACCAAGGTCA
TGTGCACGAGAAATTGGACTCTCTGATGATATCACTCCCCCCCCTCCCCT
CTCTCTCCCCCCTTGCCCCCTTCCCTCATTCCGTCACGGTGCTTGAATGC
ACCCCACGATCATGCTCTGGTTTTGTAGCGAGGACAGCCACCGTGAACGG
GGCGAAGGTCACGGTCCCCGAGGCCGTGTGGCAAGGAAGCCAGGCGCCGA
CGGCCGACCAGTCAGCGGCGATGCTTCAGCGG
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Coding sequence (CDS) from alignment at C-linearis_contig10:3047864..3048945+

>mRNA_C-linearis_contig10.632.1 ID=mRNA_C-linearis_contig10.632.1|Name=mRNA_C-linearis_contig10.632.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1032bp|location=Sequence derived from alignment at C-linearis_contig10:3047864..3048945+ (Chordaria linearis ClinC8C monoicous)
ATGTGCCGGTGTCTTAGCGTTGTTGTTGCTGCTGGCGTCCTTTTATTGAT
TTCGGGTTGTTCTAGTTTCCGGGGTTTGCTACTTCCTCGATGTCTTCTTC
GATTGGATGCATCAATGCAACCGCAGTCGATCATCATATCGTTTTGCCCG
GCTGACACTTCCGTCGTCTTGATGCCACCGCTGTCGCTGTCGCATGCTGT
CGCTGCTGCTGCTGCTGCTGCTACCCCTCTCCACCCTGACGCGCCCACCC
TTGCCCTGCCAGCCATTGCCGACCTGAGCGCAAAGACGAAGGCCCACCCG
GCCCACAAGCGCACGGCTGCCGCGGGCAAGACCGCGTTGCGGGGCAACGT
CAACATGACCGCGGCCGAGCGGGGCTCGGACAAGTCAACAAACGAGGCCA
AGGGCGACGGCGATGTGCCGGTGTCTTAGCGTTGTTGTTGCTGCTGGCGT
CCTTTTATTGATTTCGGGTTGTTCTAGTTTCCGGGGTTTGCTACTTCCTC
GATGTCTTCTTCGATTGGATGCATCAATGCAACCGCAGTCGATCATCATA
TCGTTTTGCCCGGCTGACACTTCCGTCGTCTTGATGCCACCGCTGTCGCT
GTCGCATGCTGTCGCTGCTGCTGCTGCTGCTGCTACCCCTCTCCACCCTG
ACGCGCCCACCCTTGCCCTGCCAGCCATTGCCGACCTGAGCGCAAAGACG
AAGGCCCACCCGGCCCACAAGCGCACGGCTGCCGCGGGCAAGACCGCGTT
GCGGGGCAACGTCAACATGACCGCGGCCGAGCGGGGCTCGGACAAGTCAA
CAAACGAGGCCAAGGGCGACGGCGCGAGGACAGCCACCGTGAACGGGGCG
AAGGTCACGGTCCCCGAGGCCGTGTGGCAAGGAAGCCAGGCGCCGACGGC
CGACCAGTCAGCGGCGATGCTTCAGCGGCGAGGACAGCCACCGTGAACGG
GGCGAAGGTCACGGTCCCCGAGGCCGTGTGGCAAGGAAGCCAGGCGCCGA
CGGCCGACCAGTCAGCGGCGATGCTTCAGCGG
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