Homology
BLAST of mRNA_C-linearis_contig10.632.1 vs. uniprot
Match:
A0A6H5JST9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JST9_9PHAE)
HSP 1 Score: 58.2 bits (139), Expect = 2.360e-6
Identity = 34/50 (68.00%), Postives = 36/50 (72.00%), Query Frame = 2
Query: 443 AIADLSAKTKAHPAHKRTAAAGKTALRGNVNMTAAERGSDKSTNEAKGDG 592
A ADL +T AHPAH+RT A GKT R NVN TA ERGS KSTNE K DG
Sbjct: 294 ATADLRPETIAHPAHQRTVAKGKTPSRSNVNKTAEERGSTKSTNEGKADG 343
BLAST of mRNA_C-linearis_contig10.632.1 vs. uniprot
Match:
A0A6H5JKJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKJ3_9PHAE)
HSP 1 Score: 57.0 bits (136), Expect = 6.910e-6
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 2
Query: 473 AHPAHKRTAAAGKTALRGNVNMTAAERGSDKSTNEAKGD 589
AHPAHKRTAAAGKT LR NVN TAAERGS +ST E K D
Sbjct: 234 AHPAHKRTAAAGKTPLRNNVNKTAAERGSSRSTKEGKAD 272
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.632.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 2.36e-6 / Id = 68.00 Expect = 6.91e-6 / Id = 79.49 Sequence A0A6H5JST9_9PHAE A0A6H5JKJ3_9PHAE back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category signal peptide Exons 2 Model size 698 Cds size 516 Stop 0 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927324.4913-UTR-C-linearis_contig10:3047863..3048044 1622927324.4913-UTR-C-linearis_contig10:3047863..3048044 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 3047864..3048044 + 1690879626.8978887-UTR-C-linearis_contig10:3047863..3048044 1690879626.8978887-UTR-C-linearis_contig10:3047863..3048044 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 3047864..3048044 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927324.5016077-CDS-C-linearis_contig10:3048044..3048456 1622927324.5016077-CDS-C-linearis_contig10:3048044..3048456 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 3048045..3048456 + 1690879626.9084225-CDS-C-linearis_contig10:3048044..3048456 1690879626.9084225-CDS-C-linearis_contig10:3048044..3048456 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 3048045..3048456 + 1622927324.512116-CDS-C-linearis_contig10:3048841..3048945 1622927324.512116-CDS-C-linearis_contig10:3048841..3048945 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 3048842..3048945 + 1690879626.9196382-CDS-C-linearis_contig10:3048841..3048945 1690879626.9196382-CDS-C-linearis_contig10:3048841..3048945 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 3048842..3048945 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.632.1
>prot_C-linearis_contig10.632.1 ID=prot_C-linearis_contig10.632.1|Name=mRNA_C-linearis_contig10.632.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=172bp
MCRCLSVVVAAGVLLLISGCSSFRGLLLPRCLLRLDASMQPQSIIISFCP back to top mRNA from alignment at C-linearis_contig10:3047864..3048945+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.632.1 ID=mRNA_C-linearis_contig10.632.1|Name=mRNA_C-linearis_contig10.632.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1082bp|location=Sequence derived from alignment at C-linearis_contig10:3047864..3048945+ (Chordaria linearis ClinC8C monoicous)ATGGGCTTGCTTGAGCGGCGCAAAGGGTTTGTCGTGGCCGAGTGGCCTCC
ACTGCGATAGGATTAGCATTGCTTTGTGTCGGCGCCAAATCGTTGCTTTC
CGTCGCCATCCAGCCCAAAAGCCCCGCCCCCCTCTGGCCCGACGTTGAAA
TTTGGCAGCGAGAGCTCGAAACGTTAGGTAG ATGTGCCGGTGTCTTAGCG
TTGTTGTTGCTGCTGGCGTCCTTTTATTGATTTCGGGTTGTTCTAGTTTC
CGGGGTTTGCTACTTCCTCGATGTCTTCTTCGATTGGATGCATCAATGCA
ACCGCAGTCGATCATCATATCGTTTTGCCCGGCTGACACTTCCGTCGTCT
TGATGCCACCGCTGTCGCTGTCGCATGCTGTCGCTGCTGCTGCTGCTGCT
GCTACCCCTCTCCACCCTGACGCGCCCACCCTTGCCCTGCCAGCCATTGC
CGACCTGAGCGCAAAGACGAAGGCCCACCCGGCCCACAAGCGCACGGCTG
CCGCGGGCAAGACCGCGTTGCGGGGCAACGTCAACATGACCGCGGCCGAG
CGGGGCTCGGACAAGTCAACAAACGAGGCCAAGGGCGACGGCG GTGAGGT
GGTGTGATGTTGCCCGCAATGTCTGTTGTTGTTATTGTTGTTGTTGTCGT
TTCGTCGTCGTTGTTGTTGTGGAGTAAACGGCCTTCTTTAATACCGATCT
GGGGTGGCTCCTGCGATGCCGTTGTGCTGTGTTGGCGCCGGTCGTTTGCT
TCACGTCGCCATCCAGCCCAAAAGCCTAGCCCCCCTCCGCCCCGACGTTG
AAGGTTAGCAGAGAGCGCTCGCGACGTGGTTCCAAGCAGGACCAAGGTCA
TGTGCACGAGAAATTGGACTCTCTGATGATATCACTCCCCCCCCTCCCCT
CTCTCTCCCCCCTTGCCCCCTTCCCTCATTCCGTCACGGTGCTTGAATGC
ACCCCACGATCATGCTCTGGTTTTGTAGCGAGGACAGCCACCGTGAACGG
GGCGAAGGTCACGGTCCCCGAGGCCGTGTGGCAAGGAAGCCAGGCGCCGA
CGGCCGACCAGTCAGCGGCGATGCTTCAGCGG back to top Coding sequence (CDS) from alignment at C-linearis_contig10:3047864..3048945+
>mRNA_C-linearis_contig10.632.1 ID=mRNA_C-linearis_contig10.632.1|Name=mRNA_C-linearis_contig10.632.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1032bp|location=Sequence derived from alignment at C-linearis_contig10:3047864..3048945+ (Chordaria linearis ClinC8C monoicous) back to top