|
|
Homology
BLAST of mRNA_C-linearis_contig10.629.1 vs. uniprot
Match: D7G5K3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5K3_ECTSI) HSP 1 Score: 235 bits (599), Expect = 5.230e-78 Identity = 115/118 (97.46%), Postives = 117/118 (99.15%), Query Frame = 1
Query: 40 MRLLTHNVLRSPMKGVVEGYPLRIEATDVQMVESEVKEEFVKHMATTLDWGALCKAASEVGMPEGSLPPALTPELLEDSSFLQALHRVLMDMHVVEGALVCPETGRRFPIAEGVPNLM 393
MRLLTHNVLRSPMKGVVEGYPLRIEATDVQMVESEVKEEFVKHMATTLDWGALCKAA+EVGMPEGSLPPALTPELLEDSSFL+ALHRVLMDMHVVEG LVCPETGRRFPIAEGVPNLM
Sbjct: 1 MRLLTHNVLRSPMKGVVEGYPLRIEATDVQMVESEVKEEFVKHMATTLDWGALCKAAAEVGMPEGSLPPALTPELLEDSSFLEALHRVLMDMHVVEGTLVCPETGRRFPIAEGVPNLM 118
BLAST of mRNA_C-linearis_contig10.629.1 vs. uniprot
Match: A0A836CHT2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHT2_9STRA) HSP 1 Score: 160 bits (404), Expect = 3.070e-48 Identity = 77/118 (65.25%), Postives = 96/118 (81.36%), Query Frame = 1
Query: 40 MRLLTHNVLRSPMKGVVEGYPLRIEATDVQMVESEVKEEFVKHMATTLDWGALCKAASEVGMPEGSLPPALTPELLEDSSFLQALHRVLMDMHVVEGALVCPETGRRFPIAEGVPNLM 393
MRLLTHNVLR +KGV EGYPL IEA++VQM ES + +FVKH+A TL+W AL +A +VG+PE LP A++ LL D +FL+ALHRVLMD+HVV GALVCPE+GRRFPIA G+P++M
Sbjct: 1 MRLLTHNVLRCAIKGVEEGYPLSIEASEVQMEESPFRPDFVKHIAPTLNWPALRQAVKQVGLPEDMLPEAVSDALLGDEAFLRALHRVLMDVHVVAGALVCPESGRRFPIAHGIPDMM 118
BLAST of mRNA_C-linearis_contig10.629.1 vs. uniprot
Match: W7TQC2_9STRA (TRM112-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQC2_9STRA) HSP 1 Score: 133 bits (335), Expect = 3.620e-37 Identity = 65/127 (51.18%), Postives = 93/127 (73.23%), Query Frame = 1
Query: 16 HPHTPS-MPMRLLTHNVLRSPMKGVVEGYPLRIEATDVQMVESEVKEEFVKHMATTLDWGALCKAASEVGMPEGSLPPALTPELLEDSSFLQALHRVLMDMHVVEGALVCPETGRRFPIAEGVPNLM 393
H H P+ + MRL+THN+L+S +KGV+ G+PLRIEA V++ E+E EFV+++ +DW AL A+ E+GM E LP + D SFLQ +H++L+D+HV+EG+LVCPETGRRFPI G+PN++
Sbjct: 43 HQHAPTTVVMRLITHNMLKSNVKGVINGFPLRIEAEKVEVKETEFNSEFVQNLLPKVDWPALRGASKELGMDE--LPEEMDEANKTDDSFLQLVHKLLLDVHVLEGSLVCPETGRRFPINNGIPNML 167
BLAST of mRNA_C-linearis_contig10.629.1 vs. uniprot
Match: A0A1Y1INK2_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1INK2_KLENI) HSP 1 Score: 129 bits (325), Expect = 2.550e-36 Identity = 60/118 (50.85%), Postives = 86/118 (72.88%), Query Frame = 1
Query: 40 MRLLTHNVLRSPMKGVVEGYPLRIEATDVQMVESEVKEEFVKHMATTLDWGALCKAASEVGMPEGSLPPALTPELLEDSSFLQALHRVLMDMHVVEGALVCPETGRRFPIAEGVPNLM 393
MRLLTHN+L +KGV +GYPL+IEAT + E++ F++H+ LDW AL +AA+ +G+ E LP + P LED FL+ H VL+++H+ EGALVCPETGRRFP+++G+PN++
Sbjct: 1 MRLLTHNMLACNIKGVTKGYPLKIEATKTEEKETDFNAGFLRHIYPKLDWKALREAAASLGLEE--LPEQVEPSQLEDEDFLRRFHHVLLEIHLEEGALVCPETGRRFPVSKGIPNML 116
BLAST of mRNA_C-linearis_contig10.629.1 vs. uniprot
Match: A0A2P6VL84_9CHLO (Multifunctional methyltransferase subunit TRM112 At1g22270 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VL84_9CHLO) HSP 1 Score: 125 bits (313), Expect = 1.690e-34 Identity = 56/118 (47.46%), Postives = 88/118 (74.58%), Query Frame = 1
Query: 40 MRLLTHNVLRSPMKGVVEGYPLRIEATDVQMVESEVKEEFVKHMATTLDWGALCKAASEVGMPEGSLPPALTPELLEDSSFLQALHRVLMDMHVVEGALVCPETGRRFPIAEGVPNLM 393
M+LLTHN+L +KGV G+P +IEA V++ E++ + +F++H+ + W ALC+AA+ +G+ EG LP T E+LED +F++ H L+++H+ EGALVCPETGR+FP++ G+PNL+
Sbjct: 1 MKLLTHNMLACHIKGVQNGFPFKIEAEKVEVQEADFEPDFLQHIFPRIQWAALCEAAAAMGV-EG-LPAEATEEMLEDDAFMKKFHHALLEVHLQEGALVCPETGRKFPVSAGIPNLL 116
BLAST of mRNA_C-linearis_contig10.629.1 vs. uniprot
Match: A0A388LY57_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LY57_CHABU) HSP 1 Score: 124 bits (311), Expect = 3.410e-34 Identity = 58/118 (49.15%), Postives = 85/118 (72.03%), Query Frame = 1
Query: 40 MRLLTHNVLRSPMKGVVEGYPLRIEATDVQMVESEVKEEFVKHMATTLDWGALCKAASEVGMPEGSLPPALTPELLEDSSFLQALHRVLMDMHVVEGALVCPETGRRFPIAEGVPNLM 393
MRLLTHN+L +KGV +GYPL+IEA ++ E+E +F++ + LDW AL + A + + E LP P +LED +FLQ LH VL+++++ EGALVCPETGRRFP+++G+PN++
Sbjct: 1 MRLLTHNMLTCNVKGVTKGYPLKIEAVRLEKKEAEFNPDFLRRIFPKLDWKALYETALSLDLDE--LPEQAEPSMLEDEAFLQKLHHVLLEVNLEEGALVCPETGRRFPVSKGIPNML 116
BLAST of mRNA_C-linearis_contig10.629.1 vs. uniprot
Match: G3PXS4_GASAC (Multifunctional methyltransferase subunit TRM112-like protein n=5 Tax=Perciformes TaxID=8111 RepID=G3PXS4_GASAC) HSP 1 Score: 124 bits (311), Expect = 3.730e-34 Identity = 59/118 (50.00%), Postives = 84/118 (71.19%), Query Frame = 1
Query: 40 MRLLTHNVLRSPMKGVVEGYPLRIEATDVQMVESEVKEEFVKHMATTLDWGALCKAASEVGMPEGSLPPALTPELLEDSSFLQALHRVLMDMHVVEGALVCPETGRRFPIAEGVPNLM 393
M+LLTHN+L S +KGVV+GYPL I+AT+V++ E + +FV M L+W AL +AA E+G E LP L PE + FL+ +HRVL+++ V+EG L CPE+GR FPI+ G+PN++
Sbjct: 1 MKLLTHNMLTSHVKGVVKGYPLLIKATEVKVNEVDFNPQFVSRMIPKLEWSALVQAADELGQRE-DLPGELVPEYENNEEFLKKVHRVLLEVEVIEGVLQCPESGREFPISRGIPNML 117
BLAST of mRNA_C-linearis_contig10.629.1 vs. uniprot
Match: A9S9D3_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9S9D3_PHYPA) HSP 1 Score: 124 bits (310), Expect = 4.840e-34 Identity = 56/118 (47.46%), Postives = 84/118 (71.19%), Query Frame = 1
Query: 40 MRLLTHNVLRSPMKGVVEGYPLRIEATDVQMVESEVKEEFVKHMATTLDWGALCKAASEVGMPEGSLPPALTPELLEDSSFLQALHRVLMDMHVVEGALVCPETGRRFPIAEGVPNLM 393
MRLLTHN+L +KGV +G+PL IE T ++ ESE+ +F++H+ LDW A +AA VG+ ++P + P +L+D FL+ H L+++H+ EGAL+CPETGRRFP+ +GVPN++
Sbjct: 1 MRLLTHNMLACNIKGVTKGFPLGIEHTRLETKESELNADFLRHIFPKLDWKAFHEAAQSVGV--NNIPDQVEPVMLDDDEFLRKFHHALLEVHLEEGALICPETGRRFPVTKGVPNML 116
BLAST of mRNA_C-linearis_contig10.629.1 vs. uniprot
Match: W7U893_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U893_9STRA) HSP 1 Score: 124 bits (310), Expect = 5.290e-34 Identity = 56/118 (47.46%), Postives = 85/118 (72.03%), Query Frame = 1
Query: 40 MRLLTHNVLRSPMKGVVEGYPLRIEATDVQMVESEVKEEFVKHMATTLDWGALCKAASEVGMPEGSLPPALTPELLEDSSFLQALHRVLMDMHVVEGALVCPETGRRFPIAEGVPNLM 393
MRLL+HNVLR+ KGVV+GYPL+IEA + + ++E F++H+ T+ + L AA ++G+ + P + + L ED +FL+ALH+ L D+HV+EG+LVCPE+GRRF I G+P++M
Sbjct: 1 MRLLSHNVLRNTAKGVVDGYPLKIEAAQIDVRDTEPDLTFIRHLLPTISFPVLRSAAEDLGLDAAAFPASYSTTLGEDEAFLRALHKALFDVHVLEGSLVCPESGRRFSIRGGIPDMM 118
BLAST of mRNA_C-linearis_contig10.629.1 vs. uniprot
Match: A0A803QXK8_CANSA (Uncharacterized protein n=3 Tax=Cannabis sativa TaxID=3483 RepID=A0A803QXK8_CANSA) HSP 1 Score: 123 bits (309), Expect = 6.860e-34 Identity = 57/118 (48.31%), Postives = 80/118 (67.80%), Query Frame = 1
Query: 40 MRLLTHNVLRSPMKGVVEGYPLRIEATDVQMVESEVKEEFVKHMATTLDWGALCKAASEVGMPEGSLPPALTPELLEDSSFLQALHRVLMDMHVVEGALVCPETGRRFPIAEGVPNLM 393
MRLLTHN+L S +KGV G+PLRIE V E E+ +F+K M + +DW AL +AA +G E LP + P +L+ FL+ H L+ +H+ EGAL+CPETGRRFP+ +G+PN++
Sbjct: 1 MRLLTHNMLSSNIKGVTNGFPLRIEVVKVVEKEVELNPDFLKSMFSKIDWKALVEAARSIGYTE--LPNEVDPSMLDSDDFLRRFHHALLQLHLEEGALICPETGRRFPVTKGIPNML 116
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 236.9 |
| Seed ortholog evalue | 5.5e-60 |
| Seed eggNOG ortholog | 2880.D7G5K3 |
| Preferred name | TRMT112 |
| KEGG ko | ko:K15448 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008213,GO:0008276,GO:0009451,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0018364,GO:0019219,GO:0019222,GO:0019538,GO:0022613,GO:0030488,GO:0031167,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0036265,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045935,GO:0046483,GO:0046982,GO:0046983,GO:0048471,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0080090,GO:0090069,GO:0090070,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:2000232,GO:2000234 |
| EggNOG free text desc. | peptidyl-glutamine methylation |
| EggNOG OGs | KOG1088@1,KOG1088@2759 |
| Ec32 ortholog description | Uncharacterised protein family UPF0434/Trm112 |
| Ec32 ortholog | Ec-22_000960.1 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko03012,ko03016 |
| Exons | 3 |
| Model size | 397 |
| Cds size | 396 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927348.3478925-CDS-C-linearis_contig10:3004434..3004563 | 1622927348.3478925-CDS-C-linearis_contig10:3004434..3004563 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 3004435..3004563 + |
| 1690879643.46738-CDS-C-linearis_contig10:3004434..3004563 | 1690879643.46738-CDS-C-linearis_contig10:3004434..3004563 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 3004435..3004563 + |
| 1622927348.3565094-CDS-C-linearis_contig10:3005123..3005210 | 1622927348.3565094-CDS-C-linearis_contig10:3005123..3005210 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 3005124..3005210 + |
| 1690879643.485058-CDS-C-linearis_contig10:3005123..3005210 | 1690879643.485058-CDS-C-linearis_contig10:3005123..3005210 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 3005124..3005210 + |
| 1622927348.3671799-CDS-C-linearis_contig10:3015282..3015462 | 1622927348.3671799-CDS-C-linearis_contig10:3015282..3015462 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 3015283..3015462 + |
| 1690879643.4985173-CDS-C-linearis_contig10:3015282..3015462 | 1690879643.4985173-CDS-C-linearis_contig10:3015282..3015462 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 3015283..3015462 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.629.1 >prot_C-linearis_contig10.629.1 ID=prot_C-linearis_contig10.629.1|Name=mRNA_C-linearis_contig10.629.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=132bp
KHPPTHPHTPSMPMRLLTHNVLRSPMKGVVEGYPLRIEATDVQMVESEVK
EEFVKHMATTLDWGALCKAASEVGMPEGSLPPALTPELLEDSSFLQALHR
VLMDMHVVEGALVCPETGRRFPIAEGVPNLM* back to topmRNA from alignment at C-linearis_contig10:3004435..3015462+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig10.629.1 ID=mRNA_C-linearis_contig10.629.1|Name=mRNA_C-linearis_contig10.629.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=11028bp|location=Sequence derived from alignment at C-linearis_contig10:3004435..3015462+ (Chordaria linearis ClinC8C monoicous)
AAGCATCCACCCACACACCCTCACACGCCTTCCATGCCAATGAGACTGCT
GACTCACAACGTTCTCCGGTCCCCCATGAAGGGGGTGGTGGAGGGATACC
CCTTGCGCATCGAGGCGACAGACGTCCAGGTGATGAGCCATGTCCGTGAT
TTGAACTTGGCGAAACCAGAAACCTGAAAATACAAATACACCTCCCCAAC
CCAGCCCCCCCGCAAGGGAAGCGGCCATAGCCGGATGGCATGCCTTGAGA
TATATTCTTAAAGGCGCTGTGTTCGGCATGGTCATCCTGTCGTCACCATA
GCATCCTTACCGTCGCATGGATTGTAGAACACGAGATCAAAGGGGGGTGG
TATCATACGTCACATCGACACGACAAGCGATGCGATTGGAAACGTAATGA
CGGCGTTTTATTCTGGCGAGGGTGTGGTGTTACCTTCTCTGGCCCGGGTG
ATAAAGCACGGCCGTGGAGGCCATTTAGGGTGTGTGATAACGGTGGGGTG
TGATATCACCACCCACCCCGAAGACTCTGCTGTAACATGTAGCACCTACC
AAGGGGTGTGATACCAGAGATGGGGAGGTATCTGTCTACGAACAAGGCAT
TGCCGCAGTTCTGCAGGACGTACCACAAGAATAGTTCAATGAGTACGATA
GACAGTACCCCCTCCCGTGCGCGCGTCGTATCATATCAGATGGTGGAATC
GGAGGTCAAAGAGGAGTTCGTGAAACACATGGCGACCACTCTGGACTGGG
GAGCTCTCTGCAAAGCTGCATCCGAGGTAGCAACGTAGCCAGTAACCATG
GTCTCAACACCAGCTGCCGGCCTTACTGCCGGTATGTTTCATGTTTGCCT
AACTGCGCCCCACGTTGTATGCCGATGCCTCTAGAACGCCCCGCCAGAGC
AAGCATTTTTTATTGTTGTTGTTGAAGTATCCGAGTCACCCCTTTTGTCT
CGATGTTTCCAGATACTCGCTACAGCGAGTTCCCGATATTTATTTTTTGT
TGCACGTCTCTCAAACTAGTTGAGCGGCATTGCACGACTTCCGCCATTTG
CCAGGTTGTTCGGTGAGGCCAAGGATAGTTCCTTTACTTCCTCTGTCCCA
TAATAAAACAACGTTATGGGGGGCAAATCGTACCTCGCCGATGGAGGTGC
TTCAATGCTAGTTAGTTTTTTTTTTAAGATCTAGTTACGTAGATGGCCAT
TAAAAAAACAAGACCAAGATCGTACTCATGCTTGGTGAGGAACACTGCGT
CAAGTATTGGCAAATTTCGACCAATTTCGACCAGTTTTCATCATTTTCGA
CCGAATTTCGACCAATTTTGCCGCTCATGCGGTAATTTCGGGATACAACG
TGACCACGGGGGTTTGGACAAGGCATATGGATCCGTACGCCAGTGACGAA
TCGGAAAATAGAGCCGATTTTGCGTTTTTTCGCGTTTTCTGCCACTTTTC
CGGGTTTCCAATGTCTTTCTCTGTTTTCCGGAAAGGGGCAAAATTCAGCC
ATTTATTGTTTTTTTTTTCTTTCGAATTGCCGTTTATTGATATTTCCATC
CTACGGAGGGAAGAGAGAGACCAGGCGGGCAGAGcCCCCCCTGTCTCGCA
CATTCCTCAAATACCGTCCTCTCTTCCCTCCAAAATAGCAGCCGGGGTAC
TCTTCCCCGGTGGAGGAAACTAATTTTTCCTGCACGTAGTAGTCTCAGAG
GACCAAGTCCCCAAATGGTACTCTACCATTTCCTACGCCTATGACTAAGA
TGGACCCCTTCCCCACCTTCGAAAGAAAGAGGGTGGGTGGGCGGAAAAAC
AAAAAAAAAAAACAAAACTCGATTCCTTGGCCGCTCCTCCGCTGGCCGAC
TACACTAAGTCCTTCTCTGAGTCCCCTTTGCTTTGTTTCTGCGCTACTAC
CTTTCTTCGCGCACCAACTCTCTGCGTGGACACTTTTCTTCCCCAGAGTG
ATCAGCGAAGGGCTGTCGTTCTCGCTCTCTTGGGGGCTCCGTGCTACGTT
ACTTCTACGTACCACTCCAATGATACTACGGAATTCGACGGTTTTTCCCA
ATAAACCCCGGTTTGTTCCGTCTGCGCCTCAACAAACCGACCCTTTATTG
TTTTTTTTTTTTTTTTTTCTTTCGAATTGCCGTTTATTGATATTTCCATC
CTACGGAGGGAAGAGAGAGACCAGGCGGGCAGAGCCCCCCTGTCTCGCAC
ATTCCTCAAATACCGTCCTCTCTTCCCTCCAAAATAGCAGCCGGGGTACT
CTTCCCCGGTGGAGGAAACTAATTTTTCCTGCACGTAGTAGTCTCAGAGG
ACCAAGTCCCCAAATGGTACTCTACCATTTCCTACGCCTATGACTAAGAT
GGACCCCTTCCCCACCTTCGAAAGAAAGAGGGTGGGTGGGCGGAAAAAAC
AAAAAAACAAAAACAAAACTCGATTCCTTGGCCGCTCCTCCGCTGGCCGA
CTACACTAAGTCCTTCTCTGAGTCCCCTTTGCTTTGTTTCTGCGCTACTA
CCTTTCTTCGCGCACCAACTCTCGTGGACACTTTTCTTCCCCAGAGTGAT
CAGCGAAGGGCTGTCGTTCTCGCTCTCTTGGGGGCTCCGTGCTACGTTAC
TTCTACGTACCACTCCAATGATACTACGGAATTCGACGGTTTTTCCCAAT
AAACCCCGGTTTGTTCCGTCTGCGCCTCAACAAACCGACCCTTTATTGGT
TTTTTTTTTTTCTTTCGAATTGCCGTTTATTGATATTTCCATCCTACGGA
GGGAAGAGAGAGACCAGGCGGGCAGAGCCCCCCTGTCTCGCACATTCCTC
AAATACCGTCCTCTCTTCCCTCCAAAATAGCAGCCGGGGTACTCTTCCCC
GGTGGAGGAAACTAATTTTTCCTGCACGTAGTAGTCTCAGAGGACCAAGT
CCCCAAATGGTACTCTACCATTTCCTACGCCATTCACGCGGTCATCATGA
TACTACTACTTGCGTGGAGTTCGTGCCCTTTTCCGACTACCCCACACCGT
GCCTTCCCCGGCTGCCTCGCGACTCCCTTGTCCTTATCTCCTAGTATGCG
CGACACCAATCGTGAGTCCTCGCTATTATTTACTGTGTACGTCTTGTACG
CGTCTGACTTCCATCTCCCTTCTCTCTGAATGACACGCTCTGACACGTCT
TCCCCCGCTGCTAGGGTGGACGCCCCTCCAATCCGAAGCGAATGCAATGC
AAATTCCTTCGGGTCTCGGCCTGACCGCCGTACAATCTCTCGTAATGCTT
GCAGAGCCTGACTGTACTTGAACACCTTAATTTCCCGGCCACTACGGAAT
GAAGACAACGGGGCGCTATCGGGCAACGTCGGATGACACGACAACAACTC
CACCATCAGAGCTACGGCGCCGCCGTCCGCTCTGTACCCCGATCGCGGAC
CGTAAGCGTCCTCCCGTGTGCGTGCTCTCACGTCCCCGTCTGTTCCTGGT
CGCCCTTGTGACCCCGGAAATGGACTTCTATCCGATCTGCCTGTCTCCAG
TACGTGTACTCCAACTGCTGACCCCCGAAAAATGCGACATCCCGTCGCGT
GAGACAATGTGTCGGGTGTGGTACCCCGAACTACCGGCAAACATCTCATC
GGATCGGGTGATCAGAAAATAACTCAAACTCAAGCAGAGCCACATGACAC
GCCCCCTACGTTCCATGATTTGGCTATGTCTTCACTATCTCTCAACATGC
TCCACGTTACGGGGAGACGTACTCGGCGACGCGCCCCTAGTTCAACCTGG
GACCTTGCAATTCCCTTTGAGAGCGCATTTTATCAGCGGTGACGATGTAT
CGATCTCTGCTAGCCTGTCCTGTCTATGGAAGAACTGTATCGCCGCGAAC
TTCGCCGAAATCGTGCCGGCTTGGTTTCCTTCCGACTCAAAACACCACGC
GGCAAAATCAATCAACGCCCATGCCGTCTGCTCGGACGACGTGTTTGGTC
GCAAATACATCTCACATCCCATCAACCTGCGAAACGCACACCAAGACCGG
AAAGCCGACGCGTAACTGCGTCTAGACGATTCCGCAACTGATCGTCCGAT
GAGCTCGATGCCAACACGTCTGAAGTGAGGTCCCGCGCCTCCTGCCCCAA
GTGCTGCTCCTGCCAACAGATGTCGGGCCGGCACGCGCGCAGGTTAGCGG
TGATCTCGTCATGCTTCCATCTCGAAATACCATCAGCAAGCGTGTTGGCC
AAGCCCTTAATGTGCTTAGCCCTGAACCTCCAACCATTCCGCATCTCGAG
ACATCCCATCATCCGCATCAATGCCCCCGACCTAGGCTCCCTAGCCCCAC
GGCACTTGTTAACCCAGTGAACTGCACTCATGTTGTCGCCCCTCATCAAC
ACACTCTGCCCCGGGTATTCCGGCCGTTCCCCGGCGTGCACGGTCAATGC
CCACGCCGTGACTACCATGCCTAGAAGCTCAAAAACATTCATCGACAAGT
CATCTCTTTGGCACAcCCGTTTGCGAAGGCGCGCGCGGATGTCCTCGGGG
AAGTCTATCCTCCACCACCAACCAGTCTCTAGGCAATAcCCCCCCATGGC
ATCCCCGCTTGCGTCACTAATGATGATGCGGCATGGGGGCTGCAAGAAAG
AAGCGAACAGGGGCGCCTCTAGTCTAGTGAAACCGTCTGACCCGGTCGCC
ATCTCTATGACCAGTCTCTAGGCAATACCCCCCCATGGCATCCCCGCTTG
CGTCACTAATGATGATGCGGCATGGGGGCTGCAAGAAAGAAGCGAACAGG
GGCGCCTCTAGTCTAGTGAAACCGTCTGACCCGGTCGCCATCTCTATGAC
CAATCTCCAAAAATCCAAGTCCGCGTGAAACTCGCGGCTCAATCGCACGA
CCCCCCGCCCGCGCCTGCCCCCCATACCGAGACCCTCGCCCGTCTCCCCC
GCCTGGAAAGGCGCCAGCCCTAGTTGGTTGAGAATACGGCGTATGAAAAA
CTTGCCCGGCCGCACGACTTCAGACAGATGCAATAGCTTGCCCAACAGCG
ACCGGACCTCCTTAACTGGTGCTACTCGCCGGGTCCCCGGCCACAGGTCA
AGCAGGAGACGCAATTGGACAACTTTATCCTGCGGGACGGAAATCGTCAT
GGCTATCGTATCGATCGACCAACCGAGCATTTCCATGCGCGTATCCCACG
ACGTGGTCTTCTCCCGCGCAAACAAGGGAGGCTCTCCGGCATTTCGATTG
CCGAACAAGCGGAAGCTATCGGACACGAACGAACGGGTCGCACGCAGGCA
CCGTCTCCCCTCGAGAACTCTCACTTCTACCTCAGCGAACAAGGCGTCGT
CTACATAGGTATCTACGCGAAAAGGGTCGCGGAGACCTCCACCAGAACCC
GGGGGGAATACGCAGTCAGGAGGTAGTTTCGCACGCGATTCGCCCTCCCG
TGGTGGCACTATTTGTACATGACTGGTGGCTGCACGCCCTTCCGGCGTGA
TCACCGCGTTTTGGAACGTAGTGTGGTTGTGGGCGTGCTCAACTGCGGCT
GCACACACACCCCACAGCGACGGGGAGCTAGTCCACCCAAACTGCAAACA
CCGATCGATTACAACGACGTCGCCGAACACGTAGCTGAATGTGGGCGACT
GGTTGACGTTGACACTAACTTGCCTAAAAGGCTCCTTTGGTATCGACTTT
TGCTAGCAAGATGCGAGGGGGGGGCCGGCCGTGCCCAACACGAACTTAGA
ATACAAAAATAGAATCCTCCATATTACTGACCGCAGTACGTGTCCTATTT
TACACTCCGGGAGGACCGACGTATCTGTGTCCTCGTTTACGCTGCTCCCC
GACACCGCATTAGTCAAGTCGTGGCATATCCGTATCTTGGACGGCGACAC
CGCTACGGTTAGAGGCGAAACACGAATGCCTGGGATTTGGGAGGCTACCG
CCCGCGGGAACACAAACGCCCGACCCATCGCTACATCTTCCACGATTTTT
TTCAAAATTTGAAGTTGAAACGGGCGAATCGAGCTGTGGTTTCCGTATGT
CAAAGCCGCGGGCAAGTCCCTTGTCCGGTCACGGGCACTGGTGCGCCGTG
GTCGACTATCTGCATCAACAAATCGATATCCGGGAATCCTTTCACCTCCC
CAAACCATCGTCTGACGTGTCCCGCGTCTACGCGGGAATGGGCAGAGTAT
CCAACGTATCCATCATCCGCCCAAACGGTCCCTGGTGCAGTTCGAGAAAC
TGCCAACTCTTGTCTGCAACTGTGCCTAGCGCGGTGCGAATGGGTTGAGA
GCCGAGAGCGGAAGACAACTTCCCCAACGCTACTGTGCATTCATTAAGGC
TCTCAACCGCACCTTGCTGCGTTCTAGGCGCCTGCCTCGGCTGCCGCGCC
GCTGCGTCCTCCCTGGAAGGCCCGAGTGGGCGGCTGGTCGAGGTTGGCCC
CACCACTTGGCGAGGCCCGTGTCCCTAGTTGCGCGCGGGGTGGCCGCCGC
CGCTACCGCTGCCGCCGCCGCCGCCGCCGCCGCCGTTGCCGCTGCCGCCG
CCACCGCCACTGCCGCCGCCGCTGTACCGCCGGCCACCGCTGCCGTTGCG
GTGGCTGCCGCCGCGTGCGGTGCGTTGCTTAGCGGGGTCGGGGGCGTGTG
CGAAGTCGCAGTGGCGCTCCTCCCTAGTGCACCCCCTCGCGGTCGCCCAG
GCCCAGCAGTACCCCTTCTTCCCGGATGGTAGTGTTGTTGCGGCCCGACG
CCCTCCCCCACCCGCGGGCGCGGGTGACCGCTGCCGGGGTTGATGTTGGG
AATTGTGGAGACCGCCGGCCGCGATGTATTGACGAGCCGGTCCCACGTCG
GCACCACGACGGCGGGAAAGTCGCCTACGGCCGGCGGCATAACGTGTTGC
CCCACAAAAATGGTCGCCTCCTCGTACAGCTGCCCGCCCCACCGGTTCAG
GTCCATGTTGACGAGGCGAGCCATCATCTCGTAGTTCGCGGTGACGCGCA
TCAGGCTGCGGCATTCGTTGGAGTGCCGGCGAAGCTGGCGTGCTCCCACC
CGAAGCCCCTCCTCCAGGGCCGCGACGCGTGCCCTACCGCCCATGGTGAC
CACCCTCTCGAGACGGTCTTGATGACGGCGTCGATACAAATGTCGATGCG
CTCCGTCAGCGGGATGTCGATGGTGGCGGGTCGTCTCCGGGGCAGGCGAT
TTTAGGACGTCGAACGGGCCCAGGTTGAGCAGCATCCCGTATACGTCCGG
TGACACCTGGGCCACGTCGAGGAGAATGGTCCGCATGCTGGCCAGGGACA
TCGTCGTTTCCGCCGGCCGCTGACCGGTCAAGACCCACCGCTTGTGGTTG
TCGGGGTTGCGCCACGCCTTCAGGTCCTCCTTCTCCTGGAGCTGCCGCAT
CTGAACGGTCGGCGCCGCCGCCGCCCGCGGCGGCGGTGGCATCATGTTGG
TGACGACGACCTCCGGCTCTTCCCTGTCCGCGGCATCGTCGACGGCTCCG
TGTCCCTGCCGAAGCATGCGGACGTCGTCGAGCTCCGCTTGCAATTGCTG
GACGGCGCCGTCCCGGCTGTCGAGCTCGTCTTGCATGGCGTCGATGCGGT
GGACGAGCGCGGCCATCGCGTCCATCTCGCCGCTGGTGTGCGGGACGGAT
GATGCGCGCGGGCTGCCGTCCCCGCGCCCGCCCCCTCGTCCGCGCCCGCC
TCGGCGCCCAGGCGTGCCCGAACGACGATCCGCCACAGCCGCCGCGGTGC
GCGAGGTAGAGCGCGTAGACCGTGCCCCCCGCGATGTCTGCGATGTCGAC
CGCCCTCTGGTGGACCTCGTTCTCATGATCTGAAATCAGGTGATGCGTTA
TGGGCAGCATCGGGACGGCGCGCGATCGTCAGATGGGGTAAATAATATCT
GCGCGCGTCACTGAATCGTGACGCCCGCAGAAGGGGGGGTTGTACCGTCC
CCGCCCCCCGAATTGCATGTGTGCATCCCCGAAAGGACAACCGCGGCGGG
AGAGGCTGGTTGCAAGCAAGCACCTTTCCACGCCCGATCGCTGACCACAT
GTTTGGATGGTGGGCAGTACAGACATCAACAAACCGTTGTAGCATGTGTG
CATCCCCCAAAGGACAACCGCGGCGGGAGAGGCTGTTTGCAAACAAGCAC
CTTTCCACGCCGGATCGCTGACCACATTTTTGGGTAGTGGACAGTACAGA
CATCAACAAACCGTTGTATGCATGTGTGCATCCTCGGGAGGACGACCCGT
GGCGGGAGAGGCTGTTTAACAAGCACCCCGCCAGCACAGATCGCTGACCA
CATTTTGGATGGTGGACAGTACAGACATGAAACAGAACCGTTGTATGCGT
GTGTGCATCCCCGAGGGGACAACCGCGGCGGGAGAGGCTGTTTGCAAGCA
AGCACCTTTTCACGCCTGATCGCTGACCACATTTTTGGATGGTGGACAGT
ACAGACAAGAACAAACCATTGTATGCTGTGTGCATCCCCGAGAGGACGAC
CCGTGGCGGGGGAGGCTGTTTATCAAGCACCCCGCCAGCACAGATCGCTG
ACCACATTTTGGATGGTGGACAGTACAGACATCAAACAGAACCATTGTAT
GCGTGTGTGCATCCCCGAGAGGACGACCGCGGCGGGAGAGGCTGTTTGCA
AGCAAGCACCTTTTCACGCCTGATCGCTGACCACATTTTTGGATGGTGGA
CAGTACAGACCAGAACAAACCATTGTATGCTGTGTGCATCCCCGAGAGGA
CGACCCGTGGCGGGAGAGGCTGTTTAACAAGCACCCCGCCAGCACAGATC
GCTGACCACATTTTGGGTGGTGGACAGTACAGGCATCAAACAGAACCGTT
GTATGCGTGTGTGCATCCCCGAAAGGACAACCGCGGCGGGAGAGGCTGGT
TGCAAGCAAGCACCTTTCCACGCCTGATCGCTGACCACATTTTTGGATGG
TGGACAGTACAGACAAGAACAAACCATTGTATACTGTGTGCATCCCCGAG
GGGACAACCGCGGCGGGAGAGGCTGTTTGCAAGCAAGCACCTTTCCACGC
CTGATCGCTGACCACATTTTGGATGGTGGACAGTACAGACAAGAACAAAC
CATTGTATGCATGTGTGCATCCCCGAGAGGACGACCCGTGGCGGGGGAGG
CTGTTTATCAAGCACCCCGCCAGCACAGATCGCTGACCACATTTTGGATG
GTGGACAGTACAGACATCAAACAGAACCGTTGTATGCGTGTGTGCATCCC
CGAAAGGACAACCGCGGCGGGAGAGGCTGTTTGCAAGCAAGCACCTTTTC
ACGCCTGATCGCTGACCACATTTTTTGGATGGTGGACAGTACAGACAAGA
ACAAACCATTGTATGCTGTGTGCATCCCCGAGAGGACGACCCGTGGCGGG
AGAGGCTGTTTAACAAGCACCCCGCCAGCACAGATCGCTGACCACATTTT
GGATGGTGGACAGTACAGGCATCAAACAGAACCGTTGTATGCGTGTGTGC
ATCCCCGAAAGGACAACCGCGGCGGGAGAGGCTGGTTGCAAGCAAGCACC
TTTCCACGCCTGATCGCTGACCACATTTTTGGATGGTGGACAGTACAGAC
CAGAACAAACCATTGTATACTGTGTGCATCCCCGAGGGGACAACCGCGGC
GGGAGAGGCTGTTTGCAAGCAAGCACCTTTCCACGCCTGATCGCTGACCA
CATTTTGGGTGGTGGACAGTACAGACATCAACAAACCATTGTATGCATGT
GTGCATCCCCGAGAGGACGACCCGTGGCGGGAGAGGCTGTTTACAAGCAC
CCCGCCAGCACAGATCGCTGACCACATTTTGGATGGTGGACAGTACAGAC
ATCAACAAACTATTGTATGCATGTGTGCACCCCCGAGAGGACAATCGCGG
CGGGAGAGGCTGTTTGCCAGCAAGCACCTTTCCACGCCCGATCGCTGACC
GCATTTTTGGATGGCGGACAGTACAGACAGGAACATACCATTTTTGTGCA
TGTGTGCCTCCCCGAGAAACGACAACCGTGACCGAACGTGTGGGTGATCG
GGACCCCAACACCGCATTTTTTTTTTTTTTCTTTCTCTCTCTCGGCCACA
TTTTTCTGTTCCACAGCCGTCGGCCGATCGCCATGCGTCACGCATATACT
TGGACCACGCGTGCACATCATCCACGTACCGCTCAGTGATGTACTCTGAA
GGTAGAACCTCGGCTGTCGCCCCTGGGCGGCCCCTCCTCCGGCGTCTGGG
TGCGCCCCGCTCCGCGGGAACGCGGCCGTAGCAGGAAAGGAGAAGAAGCA
GGACAAAACAAAAAAACAAAAACAAAACTCGATTCCTTGGCCGCTCCTCC
GCTGGCCGACTACACTAAGTCCTTCTCTGAGTCCCCTTTGCTTTGTTTCT
GCGCTACTACCTTTCTTCGCGCACCAACTCTCTGCGTGGACACTTTTCTT
CCCCAGAGTGATCAGCGAAGGGCTGTCGTTCTCGCTCTCTTGGGGGCTCC
GTGCTACGTTACTTCTACGTACCACTCCAATGATACTACGGAATTCGACG
GTTTTTCCCAATAAACCCCGGTTTGTTCCGTCTGCGCCTCAACAAACCGA
CCCTTTTTGGGGCCGACCGACTTTTTTTCGGCCGTTTACTCATGCCCGGT
GGTGCGCGAAGAAAACAAAACGGTGGAGGGTTCAACTTAAAAAACACTAA
AGATTTCAAAATTGTTATCGCCTACGGCATTGGACACGGTTAAGGGTCCG
TGTAGTCATACCGCAGTTTACTTATGGGACAGAAGAAGTATACTTATGTT
TTGTCTTTTAGTGGTGTTCGTGTCTGTTTCGAACACCACACTGGACGACA
CAGCAGTTTCAACTAAACAAGTACAGTCAATCACATTCAATTCGCCAGGT
CGGCATGCCCGAGGGCTCTCTCCCCCCTGCCCTGACGCCGGAGCTGCTGG
AGGACTCCTCCTTCCTGCAGGCTTTGCACCGCGTGCTGATGGACATGCAC
GTGGTGGAGGGCGCCCTCGTGTGCCCCGAGACCGGTCGAAGGTTTCCCAT
CGCGGAAGGCGTGCCGAACCTCATGTAA back to topCoding sequence (CDS) from alignment at C-linearis_contig10:3004435..3015462+ >mRNA_C-linearis_contig10.629.1 ID=mRNA_C-linearis_contig10.629.1|Name=mRNA_C-linearis_contig10.629.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at C-linearis_contig10:3004435..3015462+ (Chordaria linearis ClinC8C monoicous)
AAGCATCCACCCACACACCCTCACACGCCTTCCATGCCAATGAGACTGCT
GACTCACAACGTTCTCCGGTCCCCCATGAAGGGGGTGGTGGAGGGATACC
CCTTGCGCATCGAGGCGACAGACGTCCAGAAGCATCCACCCACACACCCT
CACACGCCTTCCATGCCAATGAGACTGCTGACTCACAACGTTCTCCGGTC
CCCCATGAAGGGGGTGGTGGAGGGATACCCCTTGCGCATCGAGGCGACAG
ACGTCCAGATGGTGGAATCGGAGGTCAAAGAGGAGTTCGTGAAACACATG
GCGACCACTCTGGACTGGGGAGCTCTCTGCAAAGCTGCATCCGAGATGGT
GGAATCGGAGGTCAAAGAGGAGTTCGTGAAACACATGGCGACCACTCTGG
ACTGGGGAGCTCTCTGCAAAGCTGCATCCGAGGTCGGCATGCCCGAGGGC
TCTCTCCCCCCTGCCCTGACGCCGGAGCTGCTGGAGGACTCCTCCTTCCT
GCAGGCTTTGCACCGCGTGCTGATGGACATGCACGTGGTGGAGGGCGCCC
TCGTGTGCCCCGAGACCGGTCGAAGGTTTCCCATCGCGGAAGGCGTGCCG
AACCTCATGTAAGTCGGCATGCCCGAGGGCTCTCTCCCCCCTGCCCTGAC
GCCGGAGCTGCTGGAGGACTCCTCCTTCCTGCAGGCTTTGCACCGCGTGC
TGATGGACATGCACGTGGTGGAGGGCGCCCTCGTGTGCCCCGAGACCGGT
CGAAGGTTTCCCATCGCGGAAGGCGTGCCGAACCTCATGTAA back to top
|