mRNA_C-linearis_contig10.626.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.626.1
Unique NamemRNA_C-linearis_contig10.626.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig10.626.1 vs. uniprot
Match: D7G6P8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6P8_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 3.970e-29
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:  136 MLKALGIENQVISMTTDTAANMKNGVIVHMAPQIQWLGCGCHKTELTVQKF 288
            MLKALGIENQVISMTTDTAANMKNGVIVHMAPQIQWLGCGCHKTELTVQKF
Sbjct:    1 MLKALGIENQVISMTTDTAANMKNGVIVHMAPQIQWLGCGCHKTELTVQKF 51
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6P8_ECTSI3.970e-29100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2973857..2974145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size289
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927347.9742887-CDS-C-linearis_contig10:2973856..29741441622927347.9742887-CDS-C-linearis_contig10:2973856..2974144Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2973857..2974144 +
1690879643.1702943-CDS-C-linearis_contig10:2973856..29741441690879643.1702943-CDS-C-linearis_contig10:2973856..2974144Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2973857..2974144 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.626.1prot_C-linearis_contig10.626.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2973857..2974144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.626.1

>prot_C-linearis_contig10.626.1 ID=prot_C-linearis_contig10.626.1|Name=mRNA_C-linearis_contig10.626.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=96bp
VSFISLTLHWIETSRSEWTVKCGTAGCEIFEGSHTGVRIGAKLTSMLKAL
GIENQVISMTTDTAANMKNGVIVHMAPQIQWLGCGCHKTELTVQKF
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mRNA from alignment at C-linearis_contig10:2973857..2974145+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.626.1 ID=mRNA_C-linearis_contig10.626.1|Name=mRNA_C-linearis_contig10.626.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=289bp|location=Sequence derived from alignment at C-linearis_contig10:2973857..2974145+ (Chordaria linearis ClinC8C monoicous)
GTGTCCTTCATCTCTCTGACTCTTCACTGGATAGAGACGTCCCGCAGCGA
GTGGACCGTCAAGTGCGGCACCGCAGGCTGCGAGATCTTCGAAGGATCCC
ACACCGGTGTGCGCATCGGGGCGAAGCTCACGAGTATGCTGAAGGCTCTT
GGGATCGAGAACCAAGTGATCAGCATGACGACCGACACGGCTGCGAATAT
GAAGAACGGCGTCATTGTCCACATGGCGCCGCAGATTCAGTGGCTTGGAT
GTGGATGCCACAAGACTGAGCTCACGGTGCAGAAGTTCG
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Coding sequence (CDS) from alignment at C-linearis_contig10:2973857..2974145+

>mRNA_C-linearis_contig10.626.1 ID=mRNA_C-linearis_contig10.626.1|Name=mRNA_C-linearis_contig10.626.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at C-linearis_contig10:2973857..2974145+ (Chordaria linearis ClinC8C monoicous)
GTGTCCTTCATCTCTCTGACTCTTCACTGGATAGAGACGTCCCGCAGCGA
GTGGACCGTCAAGTGCGGCACCGCAGGCTGCGAGATCTTCGAAGGATCCC
ACACCGGTGTGCGCATCGGGGCGAAGCTCACGAGTATGCTGAAGGCTCTT
GGGATCGAGAACCAAGTGATCAGCATGACGACCGACACGGCTGCGAATAT
GAAGAACGGCGTCATTGTCCACATGGCGCCGCAGATTCAGTGGCTTGGAT
GTGGATGCCACAAGACTGAGCTCACGGTGCAGAAGTTCGTGTCCTTCATC
TCTCTGACTCTTCACTGGATAGAGACGTCCCGCAGCGAGTGGACCGTCAA
GTGCGGCACCGCAGGCTGCGAGATCTTCGAAGGATCCCACACCGGTGTGC
GCATCGGGGCGAAGCTCACGAGTATGCTGAAGGCTCTTGGGATCGAGAAC
CAAGTGATCAGCATGACGACCGACACGGCTGCGAATATGAAGAACGGCGT
CATTGTCCACATGGCGCCGCAGATTCAGTGGCTTGGATGTGGATGCCACA
AGACTGAGCTCACGGTGCAGAAGTTC
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